Version 1
: Received: 6 May 2024 / Approved: 7 May 2024 / Online: 8 May 2024 (15:19:38 CEST)
How to cite:
Kuznetsova, X. A.; Dodueva, I. E.; Afonin, A.; Gribchenko, E.; Danilov, L. G.; Gancheva, M. S.; Tvorogova, V. E.; Galynin, N. A.; Lutova, L. A. Whole Genome Sequencing and Analysis of Tumour-Forming Radish (Raphanus sativus L.) Line. Preprints2024, 2024050438. https://doi.org/10.20944/preprints202405.0438.v1
Kuznetsova, X. A.; Dodueva, I. E.; Afonin, A.; Gribchenko, E.; Danilov, L. G.; Gancheva, M. S.; Tvorogova, V. E.; Galynin, N. A.; Lutova, L. A. Whole Genome Sequencing and Analysis of Tumour-Forming Radish (Raphanus sativus L.) Line. Preprints 2024, 2024050438. https://doi.org/10.20944/preprints202405.0438.v1
Kuznetsova, X. A.; Dodueva, I. E.; Afonin, A.; Gribchenko, E.; Danilov, L. G.; Gancheva, M. S.; Tvorogova, V. E.; Galynin, N. A.; Lutova, L. A. Whole Genome Sequencing and Analysis of Tumour-Forming Radish (Raphanus sativus L.) Line. Preprints2024, 2024050438. https://doi.org/10.20944/preprints202405.0438.v1
APA Style
Kuznetsova, X. A., Dodueva, I. E., Afonin, A., Gribchenko, E., Danilov, L. G., Gancheva, M. S., Tvorogova, V. E., Galynin, N. A., & Lutova, L. A. (2024). Whole Genome Sequencing and Analysis of Tumour-Forming Radish (<em>Raphanus sativus</em> L.) Line. Preprints. https://doi.org/10.20944/preprints202405.0438.v1
Chicago/Turabian Style
Kuznetsova, X. A., Nikita A. Galynin and Ludmila A. Lutova. 2024 "Whole Genome Sequencing and Analysis of Tumour-Forming Radish (<em>Raphanus sativus</em> L.) Line" Preprints. https://doi.org/10.20944/preprints202405.0438.v1
Abstract
Spontaneous tumours in higher plants can develop depending on plant genotype without any pathogen invasion. Spontaneous tumour formation on the taproots is consistently observed in certain inbred lines of radish (Raphanus sativus var. radicula Pers.). In this work, we have sequenced the genomes of two closely related radish inbred lines that differ in their ability to spontaneously form tumours. We have identified numerous single nucleotide variants (amino acid substitutions, insertions or deletions) that are likely to be associated with the spontaneous tumour formation. Furthermore, we performed the identification of CLE and WOX genes the genomic sequences of the radish inbred lines and, as a result, identified two unique radish CLE genes which probably encode proteins with multiple CLE domains. The results obtained provide a basis for investigating the mechanisms of plant tumour formation and also for future genetic and genomic studies of radish.
Copyright:
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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