Population growth and increasing global demand for freshwater have raised a serious challenge for the depleting sources of freshwater in the 21st century. Desalination technologies can be a reliable technique for providing freshwater. Capacitive deionization is one of the innovative desalination methods that has received increasing interest. Flow-electrode capacitive deionization (FCDI) (a new architecture of capacitive deionization) is one of the efficient, cost-effective, and environmentally-friendly desalination methods for freshwater production. In this experimental research, the performance of an FCDI system was investigated and the influence of important parameters such as flow rate of flow-electrodes, electrolyte salt concentration of flow-electrodes, and initial feed water concentration will be assessed on the efficiency of desalination operation. In this study, the flow-electrodes operated in short-circuited closed-cycle operation (SCC) mode, and also the feed water operated similarly to the flow-electrodes in closed-cycle. Moreover, in all the experiments, the salt adsorption capacity (SAC) and salt removal efficiency (SRE) was calculated. Herein, by optimizing the above mentioned parameters, the salt removal efficiency of 83% and a SAC value of 29.12 mg/g dry carbon were achieved in 5 hours.