The main goal of this paper is to present results of preliminary archaeological research on the south side of Lake Issyk-Kul in Kyrgyzstan. We test the hypothesis that agropastoral land use changed over four millennia from the Bronze Age through the ethnographic Kirghiz period due to economic, socio-political, and religious changes in the prehistoric and historic societies of this region. Our research objectives are to: (1) describe and analyze survey results from Lower Kizil Suu Valley; (2) discuss the results of radiometric and archaeobotanical samples taken from three stratigraphic profiles from three settlements from the Juuku Valley, including these chronological periods: the Wusun period (200 to 400 CE), the Qarakhanid period (1100 to 1200 CE), and the ethnographic Kirghiz period (1700 to 1900 CE); and (3) conduct preliminary GIS spatial analyses on the Iron Age mortuary remains (Saka and Wusun period). This research emerges out of the first archaeological surveys conducted in 2019 - 2021 and includes the Lower Kizil Suu alluvial fan; it is an initial step toward developing a model for agropastoral land use for upland valleys of the Inner Tian Shan Mountains.