For solving the fractional differential equations in computational fluid dynamics (CFD), it’s complicated and difficult by the Laplace and Fourier transforms. Based on the Caputo fractional derivative, the analytical solutions for unsteady unidirectional flows of a generalized Oldroyd-B fluid are deduced by the separation of variables method. Results show that the analytical solutions are given easily, and have good university. For some specific parameter values, the well-known analytical solutions for the generalized second grade fluid, the generalized Upper-Convected Maxwell (UCM) fluid as well as the ordinary Oldroyd-B fluid can be obtained.