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Inferring Neurocognition and Intelligence using Brain MRI

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02 March 2023

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03 March 2023

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Abstract
Brain magnetic resonance imaging (MRI) offers a unique lens to study neuroanatomic support of human neurocognition and intelligence. A core mystery is the MRI explanation of individual differences in neurocognition and intelligence. The past four decades have seen great advancement in studying this century-long mystery, but the sample size and population-level studies limit the explanation at the individual level. The recent rise of big data and artificial intelligence offers novel opportunities. Yet, data sources, harmonization, study design, and interpretation need to be carefully considered. This review aims to summarize past work, discuss rising opportunities and challenges, and facilitate further investigations on machine intelligence inferring human intelligence.
Keywords: 
Subject: Biology and Life Sciences  -   Neuroscience and Neurology

Introduction

Neurocognition refers to the mental process of learning, solving problems, remembering, and appropriately using information from memory.1 On the other hand, intelligence refers to different mental abilities such as problem-solving, logic, reasoning, and planning. Intelligence describes neurocognition quality in people.2–4 A person’s neurocognition and intelligence are important factors in this person’s education, career, social status, health, and longevity.5 Yet, how can we explain the substantial differences among people in their neurocognition and intelligence? Can we effectively measure a person’s neurocognition and intelligence? Can we predict a person’s future course of neurocognition and intelligence, in normal and disease? Seeking answers to these questions is at the core of neuroscience research for over a century. The hope is to identify and boost each individual’s potential (different people are “smart” in different ways),6 and to early intervene and improve outcomes for those vulnerable.7,8
Besides genetic factors,9 differences in neuroanatomy and brain connectivity are widely believed to contribute to individual variability of neurocognition and intelligence.6 Early studies (the 1900s) related neurocognitive functions to brain structures in post-mortem brains.10 The invention of magnetic resonance imaging (MRI) in 1977 has allowed for in vivo three-dimensional (3D) study of brain structure and function. Advancement in MRI analytics in the past 4 decades further brings the automated, quantitative, and sophisticated investigation of neuroanatomy11,12, white matter integrity13,14, and brain circuit connectivity15, which are all found correlated to neurocognitive and intelligence test scores.6,11 Sample sizes, however, were often dozens to lower hundreds; findings were not always consistent; and population-level associations have not yet been reliably translated into individual prediction.
With very recent availability in big data brain MRI (over 1,000 or even 10,000 individuals),16 coupled with the rise of artificial intelligence (AI),17 offers promises to revolutionize MRI inference of neurocognition and intelligence. While opportunities arise, open issues on the data source, merging, harmonization, analytics, target test scores, study design, and interpretations need to be considered. While there is a recent review,18 which mostly focused on discussing existing MRI studies that correlate brain biology to human intelligence, this review comprehensively discusses existing MRI studies focusing on human neurocognition and intelligence predictive tasks, open issues, and rising opportunities. The aim is to facilitate further studies of machine intelligence inferring human intelligence.

Measurement of Human Intelligence and Neurocognition

Assessment of intelligence is often approximated by the assessment of neurocognitive abilities.2–4 Intelligence is positively correlated to the processing speed,4 executive functions,19,20 general memory,21 and working memory,22 as these neurocognitive abilities are assessed as broad abilities in a typical intelligence assessment system (see Box 1).
Box 1. Measuring intelligence and neurocognition based on the CHC theory.
Cattell–Horn–Carroll’s (CHC) Theory for Human Intelligence: The CHC theory23 is widely accepted as a backbone for many of today’s tests for human intelligence and neurocognition. The CHC theory divides human intelligence into three stratums24, as first laid out by Carroll in 1993 and later enriched by Cattel and Horn,25, and other researchers. As Fig 1 shows, the very top stratum in the CHC theory is a general intelligence (g),26 named by Spearman26 in 1904. The general intelligence g is a fundamental ability that supports all domains of neurocognitive abilities.26 It can be further divided into “broad abilities” (middle stratum). These broad abilities first include general fluid ( g F ) and crystallized ( g C ) intelligence factors, the so-called gF-gC model as proposed by Cattell et al in 1963.27  g F refers to the ability of reasoning and solving new problems while g C refers to the knowledge and experience accumulated over time. The broad abilities in the middle stratum also include short-term memory and learning ability ( g Y ), long-term retrieval ability ( g R ), visual perception ( g V ), auditory perception ( g U ), cognitive speediness ( g S ), and processing speed ( g T ). Each of these broad abilities is subdivided into narrow abilities (the bottom stratum in Figure 1). The original 1993 version of the CHC theory has several variations in the 2010s28 and its history has been detailed online.29
Figure 1. The Cattell-Horn-Carrol (CHC) Theory divides the general intelligence g (top stratum), which is hard to measure, into 8-10 broad abilities (middle stratum) and over 60 narrow abilities (bottom stratum), which are more measurable. Measuring these narrow abilities is the core of many of today’s neurocognitive and intelligence tests.
Figure 1. The Cattell-Horn-Carrol (CHC) Theory divides the general intelligence g (top stratum), which is hard to measure, into 8-10 broad abilities (middle stratum) and over 60 narrow abilities (bottom stratum), which are more measurable. Measuring these narrow abilities is the core of many of today’s neurocognitive and intelligence tests.
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Intelligence and Neurocognition Tests: The CHC theory turns the difficult task of measuring the general intelligence g into more feasible tests of measuring 8-10 broad abilities and over 60 narrow abilities (middle and bottom stratum). Many of today’s intelligence and neurocognitive tests are designed to score these narrow abilities (bottom stratum in the CHC theory).23,30 Wechsler Adult Intelligence Scale IV (WAIS-IV)31, for example, assesses five different broad abilities (gC, gS, gV, gF, and gY) to estimate the full-scale intelligence quotient (FSIQ) as a proxy of g. Specifically, WAIS-IV tests the narrow abilities such as vocabulary, comprehension, similarities, information, and arithmetic, to assess the broad ability gC; other narrow abilities such as symbol search, coding, and cancellation to assess the broad ability gS; narrow abilities such as visual puzzles, block design, and picture completion to assess the broad ability gV; narrow abilities figure weights, arithmetic matrix, and reasoning to assess the broad ability gF; and other narrow abilities such as digit span, and letter-number sequencing to assess the broad ability gY.32 Similar sub-factoring for IQ scoring is also used for other popular scoring systems such as Wechsler Intelligence Scale for Children-V (WISC-V),33 Wechsler Abbreviated Scale of Intelligence-II (WASI-II),34 Woodcock-Johnson Tests of Cognitive Abilities-III (WJ-III)35, Mullen Scales of Early Learning (MSEL),36 and Bayley Scales of Infant Development (BSID)37, and others.
Cognitive Test Batteries: Although FSIQ is a good indicator of overall cognitive ability, it is also a composite score of different broad abilities. Thus, the FSIQ score often does not express the extent of cognitive impairment in single domains. Further, a deficit in one subtest (i.e., a deficit in one broad ability) is often compensated by a better performance in another subtest during FSIQ scoring.38 Hence, to examine a specific broad ability, different cognitive test batteries are widely used. Like conventional IQ tests, cognitive test batteries score human cognitive performance in several domains using subtests. Many domains overlap with the CHC's broad abilities, however, they also include additional domains like executive function and language performance.39 For example, the neuropsychological assessment battery (NAB)40 assesses five cognitive domains such as attention, language, memory, spatial, and executive functions. Another popular and widely used test battery, the NIH toolbox of neurocognitive battery (NIH-TCB)41 is designed to measure executive function, attention, episodic memory, language, processing speed, and working memory (see Figure 2).42

Theories linking brain structure and neurocognitive function

Neuroimaging studies since the 1980s have given rise to theories about brain structure-function mapping. Examples include network neuroscience theory (NNT),43 lateral prefrontal cortex theory (LPFCT),44 multiple-demand theory (M-DT),45 and process overlap theory (POT).46 Among these popular theories is the Parieto-Frontal Integration Theory (P-FIT), proposed by Jung and Haier in 2007, after reviewing 37 structure-function neuroimaging studies.47 The P-FIT theory, as detailed in Box 2, is influential as it offers insights that human intelligence/ neurocognition resides in large-scale connected brain regions known as brain networks.48
Box 2. The P-FIT Theory for Distributed Brain Network underlying Human Intelligence.
The P-FIT theory emphasizes network integrity most in the sustenance of human intelligence.18 The P-FIT theory involves four information processing stages, each involving different Brodmann areas (BAs) in the connected brain networks47,49 (see Figure 3):
 
Stage 1. It is assumed that humans first gather and process sensory information predominantly in the occipital and temporal areas. Early processing of sensory information happens in the extrastriate cortex (BAs 18 and 19). Recognition, imagery, and elaboration happen in the fusiform gyrus (BA 37). Analysis and elaboration of auditory information syntax happen in Wernicke’s area (BA 22).
 
Stage 2. This stage involves the structural symbolism, abstraction, and elaboration of the basic sensory information (in Stage 1) in the angular gyrus (BA 39), supramarginal gyrus (BA 40), and superior parietal lobule (BA 7).
 
Stage 3. This stage involves the interaction between parietal areas and frontal lobes (BAs 6, 9,10, 45, 46, and 47). This interaction supports problem-solving, evaluation, and hypothesis testing.
 
Stage 4. Once the best solution is reached, the anterior cingulate (BA 32) gets engaged for response selection and inhibition of competing responses.
 
The P-FIT theory emphasizes that the whole process (Stages 1-4) depends upon the fidelity of underlying white matter connectivity. White matter facilitates rapid and error-free data transmission from the posterior to frontal brain regions. Note that the P-FIT model considers only those Brodmann areas, which appeared in more than 25% of the total 37 studies Jung and Haier47 reviewed. Table 1 covers a full spectrum of Brodmann areas that Jung and Haier have summarized47.
Figure 3. Sensory information processing stages by the P-FIT model. Brodmann area (BA) numbers are color coded to correspond to different stages of information processing.
Figure 3. Sensory information processing stages by the P-FIT model. Brodmann area (BA) numbers are color coded to correspond to different stages of information processing.
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Table 1. Brodmann areas were found to be related to human cognition and intelligence in a total of 37 studies over 1,557 subjects, reported by Jung and Haier in 200747. Only shaded columns of Bas comprise the P-FIT model. Acronyms- BA: Brodmann Area, LH: Left Hemisphere, RH: Right Hemisphere.
Table 1. Brodmann areas were found to be related to human cognition and intelligence in a total of 37 studies over 1,557 subjects, reported by Jung and Haier in 200747. Only shaded columns of Bas comprise the P-FIT model. Acronyms- BA: Brodmann Area, LH: Left Hemisphere, RH: Right Hemisphere.
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Structural MRI to Infer Intelligence and Neurocognition

Typical brain MRIs include structural, diffusion, functional, and other sequences. This section starts with structural MRI (sMRI) and its inference of human intelligence and neurocognition. sMRI includes T1-, T2-weighted MRI (T1/T2-MRI), proton density, and other sequences. Subsections below will introduce morphometric features from sMRI (see review for more details50) and their use of them to infer neurocognition and intelligence.
Regional Brain Volume to Infer Neurocognition/Intelligence. Software packages such as FreeSurfer,51 FSL,52 AFNI,53 and others (see review54) allow us to automatically segment the T1- or T2-weighted brain MRIs into hemispheres (left and right), tissue types (white matter, gray matter, cerebrospinal fluid), and regions using single/multi-atlas55 or machine learning56 approaches. The volumes of these structures have been used to correlate with neurocognition or intelligence test scores.
Early studies argued that the attentional control mechanism, the linkage between sensory discrimination and intelligence,57 corresponds to the volumes in brain regions such as lateral fronto-parietal cortex58 (includes BAs 6, 8, 9), dorsal anterior cingulate58,59 (includes BA 32), and lateral posterior cerebellum.58 As summarized in Table 3 of the supplementary materials, recent structural MRI-based predictive methods55,60–70 that used brain regional volumes found that the fronto-parietal (includes BAs 6, 8, and 9), cingulo opercular (includes BAs 22, 41, and 42), visual (includes BAs 17, 18, and 19), somatosensory (includes BAs 1, 2, 3, 5, and 7), right posterior cingulate gyrus (BAs 23, 31), left caudate nucleus, entorhinal white matter (BA 28), globus pallidus, precentral gyrus (BA 4), corpus callosum, left/right hippocampus, parahippocampal gyrus (BA 34), thalamus, precentral gyrus (BA 4), caudate nucleus, pons, and motor (includes BAs 4 and 6) cortex areas are related to the fluid intelligence in adolescents. This study predicted the residual fluid intelligence score of more than 3500 adolescents with a mean square error (MSE) ranging from 92 to 101 (for a range of true residual fluid intelligence score of [-40, 30]),55,60–69 or a correlation of 10% (p <0.05),70 which further strengthens the arguments from the previous studies58,71,72 as well as the P-FIT theory. Another study73 involving a comparatively smaller adult data cohort (N = 211) reported a positive correlation of overall gray matter volume with fluid intelligence (r = 0.16; p < 0.01), working memory (r = 0.21; p < 0.01), and quantitative reasoning (r = 0.26; p < 0.01). Similar findings are reported for an infant data cohort,74 where the pre-term fetal growth restricted (P-FGR) infants group had lower mean gray matter, white matter, thalamic, cerebellar white matter, and hippocampal volumes compared to that of pre-term appropriate gestational age (PT-AGA) and term AGA (T-AGA). This difference in brain volumes is reflected in the mean FSIQ scores of PT-FGR and PT-AGA groups, 80 and 103, respectively.74 Insight test battery (ITB)-based cognitive scores can also be predicted (p < 0.001) from gray matter volumes in the right insula, right middle cingulate cortex/precuneus (BAs 13, 14, 16, 4).75 Another study76 used relative gray matter volume per voxels from the region of fronto-parietal network (includes BAs 6, 8, and 9), default mode network (includes BAs 38, 25, 23, 31, and 4), dorsal attention network (includes BAs 17, 18, 19, 8, 7, and 6), and cerebellum in principal component analysis (PCA) and showed an MSE and correlation between the actual and estimated FSIQ is 320 (p = 0.279) and r = 0.11, respectively (for true residual FSIQ in the range of [39, 136]). The caudate also plays a vital role in the rewarding system of human reinforcement learning during making a choice and action,77,78 and a significant positive correlation (r = 0.24; p = 0.01) between the caudate volume and FSIQ is also reported.79
Cortical Surface Metrics to Infer Neurocognition/Intelligence. In addition to the regional brain volumes, metrices on cortical surface also play a vital role in inferring human intelligence. Automated software such as FreeSurfer can reconstruct brain cortical surfaces, and extract cortical surface areas, cortical thickness, cortical folding curvatures, and gyrification indices. Previous studies reported that information integration and processing happen in the parahippocampal gyrus (includes BA 34) and precuneus/cuneus cortex11,80 (includes BAs 4, 19), visual identification and recognition happen in the ventral temporal cortex81,82 and integration and retrieval of semantic knowledge happen in the medial temporal lobes83 (includes BA 38).
Table 3. Summary of sMRI studies correlating regional brain volumes with neurocognition/intelligence. Acronyms- ANCOVA: Analysis of Covariance, ABCD: Adolescent Brain Cognitive Development, NKI: Nathan S. Kline Institute for Psychiatric Research, NIH-TCB: NIH toolbox of neurocognitive battery, PCA: Principal Component Analysis, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, RF: Random Forest, LR: linear regression, RR: ridge regression, MLP: multi-layer perceptron, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, MSE: Mean Square Error, RMSE: Root MSE, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, BOMAT: Bochum Matrices Test, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, P-FGR: Pre-term Fetal Growth Restricted, PT-AGA: Pre-term Appropriate Gestational Age, T-AGA: Term AGA, DTI: Diffusion Tensor Imaging, ICV: intracranial volume, WM: white matter, GM: gray matter, CSF: cerebrospinal fluid, N/A: not available, not mentioned. Probable BAs are not specified for either left or right hemisphere.
Table 3. Summary of sMRI studies correlating regional brain volumes with neurocognition/intelligence. Acronyms- ANCOVA: Analysis of Covariance, ABCD: Adolescent Brain Cognitive Development, NKI: Nathan S. Kline Institute for Psychiatric Research, NIH-TCB: NIH toolbox of neurocognitive battery, PCA: Principal Component Analysis, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, RF: Random Forest, LR: linear regression, RR: ridge regression, MLP: multi-layer perceptron, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, MSE: Mean Square Error, RMSE: Root MSE, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, BOMAT: Bochum Matrices Test, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, P-FGR: Pre-term Fetal Growth Restricted, PT-AGA: Pre-term Appropriate Gestational Age, T-AGA: Term AGA, DTI: Diffusion Tensor Imaging, ICV: intracranial volume, WM: white matter, GM: gray matter, CSF: cerebrospinal fluid, N/A: not available, not mentioned. Probable BAs are not specified for either left or right hemisphere.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro. Test
Normal/
Abnormal
Method Correlation/
Finding
Saha et al.70 2021 7709 9-10 ABCD T1-w CNN learned features and volumes of manually identified brain regions GM regions of left/right hippocampus, parahippocampal gyrus, thalamus, precentral gyrus and caudate nucleus; WM region of the pons. 34, 4 NIH-TCB Normal CNN and MLP Correlation between the actual and predicted gF = 0.1 (p < 0.05)
Hilger et al.76 2020 380 18-60 NKI-Rockland-Enhanced T1-w GM volume per voxel Frontoparietal network, default mode network, Dorsal attention network, and cerebellum 38, 25, 23, 31, 4, 17, 18, 19, 8, 7, 6, 9 WASI Normal PCA MSE and correlation between the actual and estimated FSIQ is 320 (p = 0.279) and 0.11, respectively (for true residual FSIQ in the range of [39, 136])
Chiang et al.60 2019 8669 9-10 ABCD T1-w Total volume, mean signal intensity, and entropy Visual, frontoparietal, somatosensory, motor, default mode network, and cingulo opercular network. 6, 8, 9, 22, 41, 42, 17, 18, 19, 1, 2, 3, 5, 7, 4 NIH-TCB Normal CNN, and LASSO Mean Square Error (gF) = 95.38 (for true residual gF in the range of [-40, 30])
Shrivastava et al.61 2019 8669 9-10 ABCD T1-w Volume, mean intensity, and count of GM voxels Gyrus rectus, hippocampus, inferior frontal gyrus, middle frontal gyrus, postcentral gyrus, precentral gyrus, precuneus, superior frontal gyrus and supramarginal gyrus. 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal CNN, SVR, RF, gradient boosting, and XGBoost Mean Square Error (gF) = 93.68 (for true residual gF in the range of [-40, 30])
Ren et al.62 2019 8669 9-10 ABCD T1-w ROI volumes GM 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal Bagging and boosting of LR, RR, RF, envelope-based reduced-rank regression, LASSO, Elastic-Net regressor, and KNN Mean Square Error (gF) = 92.99 (for true residual gF in the range of [-40, 30])
Tamez-Pena et al.63 2019 8669 9-10 ABCD T1-w ROI volumes GM, WM, CSF, and cerebellum 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal Ensemble of SVM, RF, and bootstrapped step wise model selection Mean Square Error (gF) = 100.89 (for true residual gF in the range of [-40, 30])
Brueggeman et al.64 2019 8669 9-10 ABCD T1-w 122 ROI volumes GM, WM, CSF 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal RF Mean Square Error (gF) = 92.49 (for true residual gF in the range of [-40, 30])
Mihalik et al.65 2019 8669 9-10 ABCD T1-w Voxel intensities and probabilistic tissue-type labels GM, WM 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal Kernel ridge regressor Mean Square Error (gF) = 92.13 (for true residual gF in the range of [-40, 30])
Ranjbar et al.66 2019 8669 9-10 ABCD T1-w 122 ROI volumes GM, WM, CSF 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal CNN and RF Mean Square Error (gF) = 93.64 (for true residual gF in the range of [-40, 30])
Wlaszczyk et al.67 2019 8669 9-10 ABCD T1-w ROI volumes, signal intensity, anterior and posterior cross-sectional area from corpus callosum GM and corpus callosum
11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal RF Mean Square Error (gF) = 92.93 (for true residual gF in the range of [-40, 30])
Zhang-James et al.55 2019 8669 9-10 ABCD T1-w 122 ROI volumes GM, WM, CSF 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal Nu SVM Mean Square Error (gF) = 95.63 (for true residual gF in the range of [-40, 30])
Kao et al.68 2019 8669 9-10 ABCD T1-w 122 ROI volumes GM, WM, CSF 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal StackNet consisting of random forest, random tree, ridge regressor, and gradient boosting Mean Square Error (gF) = 94.25 (for true residual gF in the range of [-40, 30])
Li et al.69 2019 8669 9-10 ABCD T1-w ROI volumes, # detected surface holes, the globus pallidus volume, the mean curvatures of precentral gyrus, postcentral gyrus, and banks of Superior Temporal Sulcus Right posterior cingulate gyrus, left caudate nucleus, entorhinal white matter, globus pallidus, precentral gyrus, postcentral gyrus, and superior temporal sulcus 23, 31, 28, 4, 1, 2, 3, 22 NIH-TCB Normal BlockPC-XGBoost Mean Square Error (gF) = 93.16 (for true residual gF in the range of [-40, 30])
Morsing et al.74 2018 74 7-8 Skane University Hospital in Lund, Sweden T1-w ROI volumes ICV, GM, WM, CSF, and thalamus. N/A WISC-III P-FGR, PT-AGA, and T-AGA Chi-square and ANOVA The mean (SD) FSIQ was 80 (17) in the PT-FGR group and 103 (12) in the PT-AGA group
Ogawa et al. 75 2018 232 21-69 Advanced Telecommunication Research Institute International, Kyoto T1-w GM volume Right insula, right middle cingulate cortex/precuneus 13, 14, 16, 4 Insight test battery (ITB) Normal Pearson correlation ITB score was positively correlated with the GM volumes in the mentioned region (p < 0.001)
Paul et al.73 2016 211 18-44 University of Illinois Urbana-Champaign T2-w Volume fractions across tissue types GM, WM, CSF 23, 31 BOMAT, Number Series, and Letter Set Normal Bivariate correlation GM volume is found positively correlated with quantitative reasoning (r = 0.26; p < 0.01) and working memory (r = 0.21; p < 0.01), and gF (r = 0.16; p < 0.01)
Grazioplene et al. 79
2015 517 18-40 University of Minnesota, University of New Mexico in Albuquerque, Yale University T1-w MPRAGE Caudate volume Caudate nucleus N/A WAIS-III, WAIS-IV, WASI
Normal LR Regression of IQ onto bilateral caudate volume indicated a significant positive correlation between caudate volume and FSIQ (r = 0.24; p = 0.01)
Cortical metrics are often combined with regional volumes to predict neurocognition. Studies using the ABCD dataset predicted the residual fluid intelligence score of more than 4500 adolescents with an MSE ranging from 93 to 95 (for a range of true residual fluid intelligence score of [-40, 30]), as summarized in Table 4 of the supplementary materials. These studies used cortical thicknesses, curvatures, and surface areas in conjugation with the regional volumes from the left middle temporal gyrus (BA 21), the right superior temporal gyrus (BA 22), left/right parahippocampal gyrus (BA 34), pons white matter, hippocampus, posterior cingulate gyrus (BAs 23, 31), cuneus (BA 19), left lingual gyrus (BA 19), left middle frontal gyrus (BA 10), supramarginal gyrus (BA 40), right fusiform gyrus (BA 37), superior temporal gyrus (BA 22), right anterior cingulate gyrus (BAs 24, 32, 33), and other brain structures.84–89
Significant positive correlations were also observed between the Reynolds intellectual assessment scales (RIAS) composite IQ scores and cortical gray matter volumes in the orbitofrontal gyrus (BAs 11, 12) (r = 0.41; p = 0.03), transverse temporal gyri (BAs 41, 42) (r = 0.42; p = 0.02), left superior temporal gyrus (BA 22) (r = 0.41; p = 0.04), and right anterior cingulate gyrus (BAs 24, 32, 33) (r = 0.42; p = 0.03).90 The local gyrification and surface area in the superior parietal (BA 7), left supramarginal (BA 40), left caudal middle frontal (BA 22), left pars-opercularis (BA 44), left inferior temporal (BA 20), right inferior and middle temporal (BA 21), right medial orbitofrontal (BAs 11, 12), and right rostral middle frontal (BA 10) regions are also found correlated to gF (r = 0.29; p < 0.001) and (r = 0.22; p < 0.001), respectively, and to gC (r = 0.28; p < 0.001) and (r = 0.28; p < 0.001), respectively, on a healthy young dataset (age = 21-35 years).91 In another study,92 significant positive relationship between cortical thickness in the superior parietal lobe (BA 7) and FSIQ, PIQ, and VIQ is seen at a cluster-forming threshold (CFT) of p < 0.05. Similarly, positive relationship between cortical volume in the inferior parietal lobe (BAs 39, 40) and FSIQ and PIQ is seen at a CFT of p < 0.05. Additionally, cortical volume is found positively associated with VIQ in the left insula (BAs 13, 14, 16) and FSIQ within the inferior frontal gyrus (BAs 44, 45, 47).92
Mullen scales of early learning (MSEL) cognitive ability such as visual reception, fine motor, receptive language, expressive language, and early learning composite, has also been found positively correlated with cortical thickness (r = 0.14, p = 0.025; r = 0.186, p = 0.002; r = 0.147, p = 0.016; r = 0.120, p = 0.049, respectively) of the infants at age 1 year, especially in the bilateral superior frontal and middle frontal gyri (BA 10), right medial superior frontal gyrus (BA 10), right occipital superior gyrus (BA 19), bilateral superior parietal cortices (BA 7), left primary motor cortex (BA 4), bilateral anterior cingulate (BAs 24, 32, 33) and precuneus (BA 4), and right superior and middle temporal cortices (BA 22) areas.93 Similar findings are also reported for MSEL-based future (at 4 years of age) cognitive score prediction using sMRI brain features at birth such as cortical thickness, mean curvature, local gyrification index, vertex area, vertex volume, sulcal depth in string distance and sulcal depth in Euclidean distance with a mean root square error of 0.067-0.18.94–96
Better FSIQ level has also been reported for thinner parietal association cortices, especially left/right inferior parietal (BAs 39, 40) and left/right superior parietal (BA 7) cortices.97 Overall FSIQ has been found98–100 correlated (r = 0.3~0.7; p < 0.01) with the cortical thickness, surface area, sulcal depth, curvature from the left and right parahippocampal gyrus (BA 34), left olfactory cortex (BA 35), right fusiform gyrus (BA 37), bilateral transverse temporal gyri (BAs 41, 42), bilateral thalamus, left parahippocampal gyrus (BA 34), left hippocampus, right opercular part of inferior frontal gyrus (BAs 44, 45, 47), left anterior cingulate gyrus (BAs 24, 32, 33), right amygdala, left lingual gyrus (BA 19), left superior parietal lobule (BA 7), right inferior parietal lobule (BAs 39, 40), left angular gyrus (BA 39), left paracentral lobule, and left caudate nucleus (BAs 1-4).
Voxel- and Surface-based Morphometry to Infer Neurocognition/Intelligence. VBM101 and SBM102 allows the correlation of MRI volume or surface metrics at the voxel or surface vertex level. They are extensions of the correlation at the regional or surface area levels.103 In Table 5 of the supplementary materials, we summarized existing VBM and SBM-based neurocognitive predictive studies.
Table 4. Summary of sMRI studies correlating cortical surface metrices with neurocognition/intelligence. Acronyms- ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, MSEL: Mullen Scale of Early Learning, PMAT: Penn Progressive Matrices, RIAS: Reynolds Intellectual Assessment Scales, RPM: Raven’s Advanced Progressive Matrices Set, GM: Gross Motor, VR: Visual Reception, FM: Fine Motor, RL: Receptive Language, EL: Expressive Language, ELC: Early Learning Composite, CFT: Cluster Forming Threshold, RMSE: Root Mean Square Error, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, ABIDE: Autism Brain Imaging Data Exchange, BOLD: Blood-oxygenation Level-dependent, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging. Probable BAs are not specified for either left or right hemisphere.
Table 4. Summary of sMRI studies correlating cortical surface metrices with neurocognition/intelligence. Acronyms- ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, MSEL: Mullen Scale of Early Learning, PMAT: Penn Progressive Matrices, RIAS: Reynolds Intellectual Assessment Scales, RPM: Raven’s Advanced Progressive Matrices Set, GM: Gross Motor, VR: Visual Reception, FM: Fine Motor, RL: Receptive Language, EL: Expressive Language, ELC: Early Learning Composite, CFT: Cluster Forming Threshold, RMSE: Root Mean Square Error, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, ABIDE: Autism Brain Imaging Data Exchange, BOLD: Blood-oxygenation Level-dependent, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging. Probable BAs are not specified for either left or right hemisphere.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro.
Test
Normal/
Abnormal
Method Correlation/
Finding
Zhang et al.96 2020 23 0-4 UNC Chapel Hill Early Brain Development Study T1-w,
T2-w
Cortical thickness, mean curvature, local gyrification index, vertex area, vertex volume, sulcal depth in string distance, and sulcal depth in Euclidean distance Parcellation of the cerebral cortex into 70 anatomically meaningful ROIs Not specified VR, FM, RL, EL, and ELC (MSEL) Normal CNN RMSE between the predicted and actual VR, FM, RL, and EL scores is 0.067
Li et al.90 2020 68 8 Arkansas Children's Nutrition Center T1-w Gray matter volume, surface area, and cortical thickness Orbitofrontal gyrus, transverse temporal gyri, left superior temporal gyrus, and right anterior cingulate gyrus 11, 12, 41, 42, 22, 24, 32, 33 RIAS Normal Spearman’s correlation test RIAS scores showed significant correlations (r = [0.38-0.44], p = [0.005-0.046]) with cortical metrices
Tadayon et al.91 2020 740 21-35 HCP T1-w Cortical thickness, cortical surface area, and cortical gyrification Superior parietal, left supramarginal, left caudal middle frontal, left pars-opercularis, left inferior temporal, right inferior and middle temporal, right medial orbitofrontal, and right rostral middle frontal regions 7, 40, 22, 44, 20, 21, 11, 12, 10 PMAT and NIH-TCB Normal Linear regression Correlation between the local gyrification, and surface area with gF and gC are 0.29 and 0.22 (p < 0.001), 0.28 and 0.28 (p < 0.001), respectively
Oxtoby et al.84 2019 8669 9-10 ABCD T1-w Cortical morphology as graph A structural co-variance network graph considers small cortical regions (3 voxels cubed) as nodes, and structural similarity (morphology) between nodes as edges. 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal Event-based model of progression, and SVR Mean Square Error (gF) = 93.83 (for true residual gF in the range of [-40, 30])
Rebsamen et al.85 2019 8669 9-10 ABCD T1-w Subcortical volumes, cortical thicknesses, curvatures, and surface areas Middle temporal gyrus, superior temporal gyrus 21, 22 NIH-TCB Normal SVR Mean Square Error (gF) = 93.03 (for true residual gF in the range of [-40, 30])
Valverde et al.86 2019 8669 9-10 ABCD T1-w 122 ROI volumes in the gray matter, white matter, and cerebrospinal fluid, 78 contrast and 78 cortical thickness measures, gender, age, and scanner manufacturer Gray matter, white matter, and cerebrospinal fluid Not specified NIH-TCB Normal Fully connected neural network Mean Square Error (gF) = 94.02 (for true residual gF in the range of [-40, 30])
Pölsterl et al.87
2019 8669 9-10 ABCD T1-w Cortical thickness and volumes of 122 ROIs in the gray matter, white matter, and cerebrospinal fluid Left/right parahippocampal gyrus,
pons white matter,
hippocampus,
posterior cingulate gyrus, cuneus,
left lingual gyrus,
left middle frontal gyrus, supramarginal gyrus, right fusiform gyrus, superior temporal gyrus, right anterior cingulate gyrus, etc.
34, 23, 31, 19, 10, 40, 37, 22, 24, 32, 33 NIH-TCB Normal An ensemble of gradient boosted trees, and a linear ridge regressor. Mean Square Error (gF) = 94.25 (for true residual gF in the range of [-40, 30])
Pölsterl et al.88 2019 8669 9-10 ABCD T1-w Cortical thickness and volumes of 122 ROIs in the gray matter, white matter, and cerebrospinal fluid Left/right parahippocampal gyrus,
pons white matter,
hippocampus,
posterior cingulate gyrus, cuneus,
left lingual gyrus,
left middle frontal gyrus, supramarginal gyrus, right fusiform gyrus, superior temporal gyrus, right anterior cingulate gyrus, etc.
34, 23, 31, 19, 10, 40, 37, 22, 24, 32, 33 NIH-TCB Normal AutoML ensembles of 14 classifiers Mean Square Error (gF) = 94.25 (for true residual gF in the range of [-40, 30])
Guerdan et al.89 2019 8669 9-10 ABCD T1-w Volume, elongation, surface area, roundness, and flatness of grey matter ROIs. Gray matter, white matter, and cerebrospinal fluid
Not specified NIH-TCB Normal LASSO, ridge regressor, SVR, gradient boosting, and AdaBoost regressors. Mean Square Error (gF) = 94.48 (for true residual gF in the range of [-40, 30])
Girault et al.93 2019 487 1-2 University of North Carolina (UNC) Chapel Hill Early Brain Development Study T1-w,
T2-w
Cortical thickness, and surface area Bilateral superior frontal and middle frontal gyri, right medial superior frontal gyrus, right occipital superior gyrus, bilateral superior parietal cortices, left primary motor cortex, bilateral anterior cingulate and precuneus, and right superior and middle temporal cortices areas 10, 19, 7, 4, 24, 32, 33. 22
GM, VR, FM, RL, EL, and ELC (MSEL) Normal Pearson correlation, Linear mixed effect model Correlations between average cortical thickness at age 1 and GM, FM, EL, and RL scores at age 1 (r = 0.137, p = 0.025; r = 0.186, p = 0.002; r = 0.147, p = 0.016; r = 0.120, p = 0.049, respectively),
Adeli et al.94 2019 24 0-4 UNC Chapel Hill Early Brain Development Study T1-w,
T2-w,
DWI
Cortical thickness, mean curvature, local gyrification index, vertex area, vertex volume, sulcal depth in string distance, and sulcal depth in Euclidean distance Parcellation of the cerebral cortex into 70 anatomically meaningful ROIs Not specified VR, FM, RL, EL, and ELC (MSEL) Normal Multi-task multi-linear regression RMSE between the predicted and actual VR, FM, RL, and EL scores is 0.18.
Zhang et al.95 2018 23 0-4 UNC Chapel Hill Early Brain Development Study T1-w,
T2-w
Cortical thickness, mean curvature, local gyrification index, vertex area, vertex volume, sulcal depth in string distance, and sulcal depth in Euclidean distance Parcellation of the cerebral cortex into 70 anatomically meaningful ROIs Not specified VR, FM, RL, EL, and ELC (MSEL) Normal Multi-task multi-linear regression RMSE between the predicted and actual VR, FM, RL, and EL score is 0.158.
Bajaj et al.92 2018 56 18-45 McLean Hospital and Partners Healthcare, and the U.S. Army Human Research Protections Office T1-w Cortical thickness, cortical surface area, cortical volume, and cortical gyrification Posterior frontal, superior and inferior parietal lobes, left insula, and inferior frontal gyrus 7, 39, 40, 13, 14, 16, 44, 45, 47 WASI-II Normal Generalized linear model Significant positive relationships between thicker cortex and higher IQ at a liberal CFT of p < 0.05 as well as at a strict CFT of p < 0.01 is observed.
Wang et al. 99 2015 164 6-15 ABIDE T1-w Cortical thickness, surface area, sulcal depth, curvature
Bilateral transverse temporal gyri, bilateral thalamus, left parahippocampal gyrus, left hippocampus,
right opercular part of inferior frontal gyrus, left anterior cingulate gyrus, right amygdala,
left lingual gyrus, left superior parietal lobule, right inferior parietal lobule, left angular gyrus, left paracentral lobule, and
left caudate nucleus
41, 42, 34, 44, 45, 47, 32, 7, 40, 39, 1, 2, 3, 4 - Normal Multi/single kernel support vector regressor Correlation between the actual and estimated IQ is 68.4%
Squeglia et al.97 2013 185 12-14 San Diego area public middle schools T1-w Cortical thickness Left and right inferior parietal cortices, and left and right superior parietal cortices 39, 40, 7 WISC-III, WAIS-IV
Normal Hierarchical linear regressions For both males and females, thinner parietal association cortices corresponded with better neurocognitive functioning above and beyond age alone.
Yang et al. 98 2013 78 17-27 Seoul National University, Catholic University of Korea T1-w Cortical thickness, surface area, sulcal depth and absolute mean curvature in 78 parcellated ROIs Cerebral cortex
34, 35, 37 WAIS Normal Partial least square regression
Correlation between the Actual and predicted FSIQ is 30% (p < 0.01)
Choi et al. 100 2008 225 20.9±2.9 Seoul National University, Catholic University of Korea T1-w The thickness of the gray matter of the cerebral cortex Gray matter of cerebral cortex 38, 20, 21, 40 WASI, RPM-II Normal Multivariate regression model gC is correlated to cortical thickness and gF is related to BOLD signals.
Table 5. Summary of sMRI study using brain morphometry in inferring/relating to human neurocognition and intelligence. Acronyms- COPD: Chronic Obstructive Pulmonary Disorder, OCD: Obsessive Compulsive Disorder, DD: Developmental Dyslexia, FA: fractional anisotropy, VBM: Voxels-based Morphometry, MDD: major Depressive Disorder, NCANDA: National Consortium on Alcohol and Neurodevelopment in Adolescence, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, VIQ: Verbal IQ, PIQ: Performance IQ, ANCOVA: Analysis of Covariance, T1-w: T1-weighted MRI.
Table 5. Summary of sMRI study using brain morphometry in inferring/relating to human neurocognition and intelligence. Acronyms- COPD: Chronic Obstructive Pulmonary Disorder, OCD: Obsessive Compulsive Disorder, DD: Developmental Dyslexia, FA: fractional anisotropy, VBM: Voxels-based Morphometry, MDD: major Depressive Disorder, NCANDA: National Consortium on Alcohol and Neurodevelopment in Adolescence, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, VIQ: Verbal IQ, PIQ: Performance IQ, ANCOVA: Analysis of Covariance, T1-w: T1-weighted MRI.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro.
Test
Normal/
Abnormal
Method Correlation/
Finding
Hidese et al.104 2020 266 45.6±12.9 Volunteer data from Kodaira city, Tokyo T1-w,
DTI
Regional gray matter volumes in the VBM and the white matter FA values in the DTI Left gyrus rectus and anterior cingulate gyrus, left posterior insula, left superior and middle frontal gyri 11, 24, 32, 33, 13, 14, 16, 10 WAIS-III Normal Pearson correlation VIQ correlated positively with the specified brain regional volumes with p < 0.005.
McDermott et al.105 2019 623 5-25 National Institute of Mental Health Intramural Research Program T1-w Surface-based shape Left inferior and middle temporal, left inferior parietal, and left medial frontal regions 20, 21, 39, 40, 25 WASI, WISC, WAIS Normal Linear mixed-effect model Positive associations (β > 100; p < 0.001) between FSIQ and cortical anatomy is observed.
Ramsden et al.106 2011 33 14.1±1.0 Department of Psychological Sciences, Birkbeck College, University of London T1-w Changes in gray matter density Motor speech area, and anterior cerebellum 4, 6 WISC, WAIS Normal Linear regression Correlation between change in VIQ and change in grey matter density were 0.876 (p < 0.01) for high, 0.797 (p < 0.05) for average and 0.660 (p < 0.05) for low ability groups, respectively. For PIQ, correlation was 0.492 (p > 0.05) for high, 0.788 (p < 0.05) for average and 0.715 (p < 0.01) for low ability groups, respectively.
Briefly, VBM-based gray matter volumes in the left gyrus rectus (BA 11) and anterior cingulate gyrus (BAs 24, 32, 33), left posterior insula (BAs 13, 14, 16), left superior and middle frontal gyri (BA 10) are found to be positively correlated (p < 0.005) to VIQ scores.104 Similarly SBM-base shape features in the left inferior and middle temporal (BAs 20, 21), left inferior parietal (BAs 39, 40), and left medial frontal (BA 25) regions showed positive associations (β > 100; p < 0.001) with FSIQ.105 Another study106 divided their study population into average (FSIQ = [80, 119]), low, and high (FSIQ > 119) groups, and observed that the correlation between the change in VIQ and change in the grey matter density in the motor area (BAs 4, 6) and anterior cerebellum is 0.876 (p < 0.01) for high ability, 0.797 (p < 0.05) for average ability and 0.660 (p < 0.05) for low ability groups, respectively. Similarly, the corresponding effects were seen for PIQ as 0.492 (p > 0.05) for high ability, 0.788 (p < 0.05) for average ability, and 0.715 (p < 0.01) for low ability groups.
Deep Features from sMRI to Infer Intelligence/Neurocognition. Regional, surface-area, voxel, and vertex-level features, as described above, are so-called handcrafted or hand-engineered features. They carry neuroanatomic meanings and are easy to interpret. On the other hand, the rise of deep learning extracts tens of thousands or even millions of “deep features” from the whole MRI or image patches. Those deep features are extracted from convolutions of images with filters (3×3×3, 5×5×5, or other sizes). Several studies60,66,107–110 used a convolutional neural network (CNN), a specific type of image-based deep learning technique, on T1-MRI to predict fluid intelligence in adolescents. They predicted the residual fluid intelligence score of more than 4500 adolescents with an MSE ranging from 92 to 103 (for a range of true residual fluid intelligence score of [-40, 30]), as summarized in Table 6 of the supplementary materials. However, the interpretation of deep features is difficult. A potential solution is to choose brain regions beforehand and those regions to deep learning models. For example, Zou et al.109 used regions from bilateral transverse temporal gyri (BAs 41, 42), bilateral thalamus, left parahippocampal gyrus (BA 34), left hippocampus, right opercular part of inferior frontal gyrus (BAs 44, 45, 47), left anterior cingulate gyrus (BAs 24, 32, 33), right amygdala, left lingual gyrus (BA 19), left superior parietal lobule (BA 7), right inferior parietal lobule (BAs 39, 40), left angular gyrus (BA 39), left paracentral lobule, and left caudate nucleus (BAs 1-4) in their deep learning model to predict gF score. However, the choice of such regions may be subjective, the accuracy of prediction was not significantly different from inputting the whole image, and treating regions separately may miss the opportunity to consider those regions jointly in the convolutions. Interpretation of deep learning models can be also achieved by masking or replacing different regions, adding random noise to images, or calculating the saliency, activating, or attention maps.111–113 Their use in interpreting deep learning prediction of intelligence or neurocognition is yet to be studied.
Summary of sMRI Inference of Neurocognition and Intelligence. In Figure 4, we show a bar plot representing the proportion of our reviewed sMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. For simplicity, we only used the Brodmann areas without mentioning the hemisphere sides.
Table 6. Summary of sMRI studies inferring/relating to human neurocognition and intelligence. Acronyms- ANCOVA: Analysis of Covariance, ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, ABIDE: Autism Brain Imaging Data Exchange, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging, DTI: Diffusion Tensor Imaging, TRUST: T2-relaxation under spin tagging. Probable BAs are not specified for either left or right hemisphere.
Table 6. Summary of sMRI studies inferring/relating to human neurocognition and intelligence. Acronyms- ANCOVA: Analysis of Covariance, ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, LASSO: Least Absolute Shrinkage and Selection Operator, SVM: Support Vector Machine, SVR: Support Vector Regression, CNN: Convolutional Neural Network, ROI: Region of Interest, KNN: K-Nearest Neighbors, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, ABIDE: Autism Brain Imaging Data Exchange, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging, DTI: Diffusion Tensor Imaging, TRUST: T2-relaxation under spin tagging. Probable BAs are not specified for either left or right hemisphere.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro.
Test
Normal/
Abnormal
Method Correlation/
Finding
Chiang et al.60 2019 8669 9-10 ABCD T1-w Total volume, mean signal intensity, and entropy Visual, fronto-parietal, somatosensory, motor, default mode network, and cingulo opercular network. 6, 8, 9, 22, 41, 42, 17, 18, 19, 1, 2, 3, 5, 7, 4, 6 NIH-TCB Normal CNN, and LASSO Mean Square Error (gF) = 95.38 (for true residual gF in the range of [-40, 30])
Ranjbar et al.66 2019 8669 9-10 ABCD T1-w 122 ROI volumes in the gray matter, white matter, and cerebrospinal fluid Gray matter, white matter, and cerebrospinal fluid 11, 44, 45, 47, 4, 1, 2, 3, 10, 12, 40 NIH-TCB Normal CNN and random forest Mean Square Error (gF) = 93.64 (for true residual gF in the range of [-40, 30])
Vang et al.107 2019 8669 9-10 ABCD T1-w CNN-learned features Gray matter, white matter, and cerebrospinal fluid
Not specified NIH-TCB Normal CNN with gradient boosting machine Mean Square Error (gF) = 96.18 (for true residual gF in the range of [-40, 30])
Pominova et al.108 2019 8669 9-10 ABCD T1-w CNN-learned features Gray matter Not specified NIH-TCB Normal VoxCNN Mean Square Error (gF) = 93.838 (for true residual gF in the range of [-40, 30])
Zou et al.109 2019 8669 9-10 ABCD T1-w CNN-learned features Bilateral transverse temporal gyri, bilateral thalamus, left parahippocampal gyrus, left hippocampus, right opercular part of inferior frontal gyrus, left anterior cingulate gyrus, right amygdala, left lingual gyrus, left superior parietal lobule, right inferior parietal lobule, left angular gyrus, left paracentral lobule, and left caudate nucleus. 41, 42, 34, 44, 45, 47, 24, 32, 33,
19, 7, 39, 40, 1, 2, 3, 4
NIH-TCB Normal 3D CNN Mean Square Error (gF) = 92.74 (for true residual gF in the range of [-40, 30])
Liu et al.110 2019 8669 9-10 ABCD T1-w CNN-learned features Skull-stripped whole brain Not specified NIH-TCB Normal UNet-like encoder/decoder Mean Square Error (gF) = 102.25 (for true residual gF in the range of [-40, 30])

Diffusion MRI to Infer Intelligence and Neurocognition

Diffusion tensor imaging (DTI) measures water flow at every voxel in the brain. Its parameter maps include Fractional Anisotropy (FA), which measures the directionality of water diffusion (ranging between 0 for complete diffusion in all directions and 1 for single-directional flow), apparent diffusion coefficient (ADC), which measures the magnitude of water diffusion at each voxel. DTI can also construct tractography, which quantifies white matter tracts that water flows through, and is also known as structural connectivity. In Table 7 of the supplementary materials, we summarized existing Diffusion MRI-based neurocognitive predictive studies.
FA is found to be correlated to neurocognitive function. For example, full-scale IQ is shown to be correlated (r = 0.53; 95% CI 0.35–0.66) to the FA values in the right anterior thalamic radiation, left superior longitudinal fasciculus, left inferior fronto-occipital fasciculus, and left uncinate fasciculus (collectively, BAs 1, 3-9, 11, 13, 17, 18, 22, 24, 25, 29, 32, 34-36, 38, 39, 41, 42-47).114 It is also found that FA at 2 weeks of age is correlated (r = 0.35-0.48) to the BSID-based neurodevelopmental outcomes at 2 years of age in infants.115 Similarly, Pearson’s correlation analysis revealed a negative correlation (r = -0.73; p < 0.001) between VIQ and FA in the left-hemispheric Brocaʼs area (BAs 44, 45).116 In addition, correlation analysis of VIQ and mean diffusivity (MD) revealed a positive correlation in the left hemispheric Brocaʼs area (BAs 44, 45).116 Another study117 used FA to find chronic neurological damage in 30-60 years old retired national football league players and its association with mini-mental state examination (MMSE) evaluation of cognitive functions, which revealed a neurophysiological impairment in about 24% of the studied population.
Table 7. Summary of diffusion MRI studies inferring human neurocognition and intelligence. Acronyms- FA: Fractional Anisotropy, MD: Mean Diffusivity, RD: Radial Diffusivity, BSID: Bayley Scales of Infant Development, MSEL: Mullen Scale of Early Learning, MMSE: Mini-Mental Status Examination, VR: Visual Reception, FM: Fine Motor, RL: Receptive Language, EL: Expressive Language, ELC: Early Learning Composite, RMSE: Root Mean Square Error, HCP: Human Connectome Project, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, PIQ: Performance IQ, VIQ: Verbal IQ, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging, DTI: Diffusion Tensor Imaging. Probable BAs are not specified for either left or right hemisphere.
Table 7. Summary of diffusion MRI studies inferring human neurocognition and intelligence. Acronyms- FA: Fractional Anisotropy, MD: Mean Diffusivity, RD: Radial Diffusivity, BSID: Bayley Scales of Infant Development, MSEL: Mullen Scale of Early Learning, MMSE: Mini-Mental Status Examination, VR: Visual Reception, FM: Fine Motor, RL: Receptive Language, EL: Expressive Language, ELC: Early Learning Composite, RMSE: Root Mean Square Error, HCP: Human Connectome Project, WASI: Weschler Abbreviated Scale of Intelligence, WISC: Wechsler Intelligence Scale for Children, WAIS: Wechsler Adult Intelligence Scale, FSIQ: Full-scale Intelligent Quotient, PIQ: Performance IQ, VIQ: Verbal IQ, T1-w: T1-weighted MRI, T2-w: T2-weighted MRI, DWI: Diffusion-weighted Imaging, DTI: Diffusion Tensor Imaging. Probable BAs are not specified for either left or right hemisphere.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro.
Test
Normal/
Abnormal
Method Correlation/
Finding
Malpas et al.114 2016 91 18-55 Nathan Kline Institute/Rockland Sample DTI FA 42 Brodmann regions were specified in each hemisphere 1, 3, 4, 5, 6, 7, 8, 9, 11, 24, 25, 29, 32, 44, 45, 46, 47, 13, 22, 34, 35, 36, 38, 41, 42, 39, 40, 43, 17, 18 WASI Normal t statistic regression analysis
FA was positively correlated with FSIQ with r = 0.53 (95% CI 0.35–0.66).
Konrad et al. 116 2012 30 22.8±1.5 Institute of Neuroradiology of the Johannes Gutenberg University Mainz, Germany T1-w,
DTI
FA, MD Left-hemispheric Brocaʼs area
44, 45, 22 Hamburg–Wechsler Intelligenztest (HAWIE-R) - equivalent to WAIS-R Normal Voxel-wise t statistic regression analysis, Pearson correlation
VIQ performance is negatively correlated to the FA in the mentioned regions (r = - 0.73; p < 0.001).
Feng et al.115 2019 38 0-2 Arkansas Children’s Nutrition Center DTI FA White matter tracts Not specified BSID-III Normal Voxel-wise tract-based spatial statistics (TBSS)
Correlations between FA at 2 weeks of age and BSID subfields scores at 2 years of age are 0.35~0.48.
Casson et al.117 2014 45 30-60 Wayne State University T1-w, SWI, DTI FA-based dysarthria, pyramidal system dysfunction, extrapyramidal system dysfunction, and cerebellar dysfunction Gray matter, white matter, and cerebrospinal fluid Not specified MMSE Normal/ abnormal Chi-square test The number of football-related concussions was associated with isolated neurocognitive abnormalities in 24% of population.
Adeli et al.94 2019 24 0-4 UNC Chapel Hill Early Brain Development Study T1-w,
T2-w,
DWI
Cortical thickness, mean curvature, local gyrification index, vertex area, vertex volume, sulcal depth in string distance, and sulcal depth in Euclidean distance Parcellation of the cerebral cortex into 70 anatomically meaningful ROIs Not specified VR, FM, RL, EL, and ELC (MSEL) Normal Multi-task multi-linear regression Correlation between predicted and true ELC is 0.70 (p < 0.001)
Lee et al.118 2017 535 0-2 UNC Chapel Hill Early Brain Development Study DTI Axial diffusivity (AD), radial diffusivity (RD), and FA
White matter Not specified MSEL: ELC Normal Distance correlation coefficient Correlation between AD, RD and FA with ELC are 0.13~0.20 (p < 0.05)
Zhang et al. 119 2019 1076 - HCP DWI Count of streamlines, connected surface area (CSA) and weighted CSA, mean and maximum values of FA and MD, cluster number, average length, and mean deviations from a template streamline ROIs in the whole cortex
Not specified Raven's Progressive Matrices
Normal Tensor network principal components analysis
Correlation between actual and estimated gF is 24.11% (p < 0.001).
Other study94 used different cortical features from the whole brain such as the sulcal depth as Euclidian distance from the cerebral hull surface, local gyrification index, curved sulcal depth along the streamlines constrained in cerebral fluid, mean curvature, and cortical thickness, corresponding to working memory, attention, verbal learning and memory, visuospatial functioning, spatial planning, and problem-solving, and inhibition as features and found a correlation between predicted and true early learning composite (ELC) od 0.70 (p < 0.001). A similar study118 but using DTI-based features from the whole brain such as axial diffusivity (AD), radial diffusivity (RD), and FA found a correlation between the DT features (i.e., AD, RD, and FA) and ELC of 0.13~0.20 (p < 0.05). Another study119 used several DWI features from the whole brain such as count of streamlines, connected surface area (CSA), weighted CSA, mean and maximum FA and MD, cluster number, average length, and mean deviations from a template streamline to predict gF, and reported a correlation between actual and estimated gF of 24.11% (p < 0.001).

Functional MRI to Infer Intelligence and Neurocognition

Functional MRI (fMRI) utilizes the blood oxygenation level-dependent (BOLD) effect to reveal the brain connectivity during a stimulation (task-fMRI) or in a resting state (rs-fMRI).120 Major large-scale brain networks as found in resting-state fMRI include the dorsal and ventral default mode, right and left executive control, dorsal and ventral attention, anterior and posterior salience, basal ganglia, language, high and primary visual, precuneus, auditory and somatosensory networks, and others.121
Functional connectivity strength among different parts of the brain, estimated from fMRI, can be used to predict neurocognitive and intelligence scores. As summarized in Table 8 of the supplementary materials, functional connectivity in the bilateral dorsolateral prefrontal cortices (BA 9) is significantly correlated (r = 0.47; p = 0.0002) to the Wechsler Adult Intelligence Scale (WAIS) intelligence scores.122 Also, the functional connectivity in the frontoparietal network region (including BAs 9, 4, 39, 40, 46, 10, 13 and other regions) and central brain regions (i.e., somatosensory region; BAs 1, 2, 3) is used for later life neuropsychological test performance prediction with a correlation between the actual and predicted behavioral scores of r = 0.12~0.44 (p < 0.001).123 Frontoparietal network (BAs 9, 4, 39, 40, 46, 10, 13, etc.) connectivity is also found significantly correlated to fluid intelligence (r = 0.50; p < 0.01),124 memory (r = 0.097; p < 0.001),125 general neurocognitive ability (r = 0.31; p < 0.0001),126 and FSIQ (r = 0.51; p < 0.001)127 performance. Any disease (e.g. Turner syndrome128) related impairment in the fronto-parietal network also causes a deficit in the gF/VIQ, compared to a healthy population (p < 0.0001).
Some other studies used fMRI-based functional connectivity data from Human Connectome Project (HCP) to show a correlation between the actual and estimated fluid intelligence (0.19-33)129–133 and cognitive ability (0.95).134
In Figure 5, we show a bar plot representing the proportion of our reviewed fMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. For simplicity, here also, we only used the Brodmann areas without mentioning the hemisphere sides. We see in this figure that AI approaches also utilized those Brodmann areas, which were previously reported to be correlated to the intelligence and neurocognition of humans. In addition, we see in this figure that the AI approaches used many Brodmann areas, which are in fact a part of the well-known P-FIT model.
Table 8. Summary of functional MRI inferring human neurocognition and intelligence. Acronyms- OASIS: Open Access Series of Imaging Studies, KSHAP: Korean Social Life, Health, and Aging Project, ABCD: Adolescent Brain Cognitive Development, FC: Functional Connectivity, MMSE: Mini-Mental Status Examination, BOLD: Blood-oxygen-level-dependent, ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, ANOVA: Analysis of Variance, FSIQ: Full-scale Intelligent Quotient, PIQ: Performance IQ, VIQ: Verbal IQ, LASSO: Least Absolute Shrinkage and Selection Operator, CNN: Convolutional Neural Network, HCP: Human Connectome Project, WAIS: Wechsler Adult Intelligence Scale, WASI: Wechsler Abbreviated Scale of Intelligence, MMSE: Mini-mental State Examination, CPM: Connectome-Based Predictive Modeling; T1-w: T1-weighted MRI, fMRI: functional MRI.
Table 8. Summary of functional MRI inferring human neurocognition and intelligence. Acronyms- OASIS: Open Access Series of Imaging Studies, KSHAP: Korean Social Life, Health, and Aging Project, ABCD: Adolescent Brain Cognitive Development, FC: Functional Connectivity, MMSE: Mini-Mental Status Examination, BOLD: Blood-oxygen-level-dependent, ABCD: Adolescent Brain Cognitive Development, NIH-TCB: NIH toolbox of neurocognitive battery, ANOVA: Analysis of Variance, FSIQ: Full-scale Intelligent Quotient, PIQ: Performance IQ, VIQ: Verbal IQ, LASSO: Least Absolute Shrinkage and Selection Operator, CNN: Convolutional Neural Network, HCP: Human Connectome Project, WAIS: Wechsler Adult Intelligence Scale, WASI: Wechsler Abbreviated Scale of Intelligence, MMSE: Mini-mental State Examination, CPM: Connectome-Based Predictive Modeling; T1-w: T1-weighted MRI, fMRI: functional MRI.
Study Year N Age
(years)
Dataset MRI type MRI features Regions Probable BAs IQ/
Neuro.
Test
Normal/
Abnormal
Method Correlation/
Finding
Song et al. 122 2008 59 18.5–33.3 Xuanwu Hospital of Capital Medical University fMRI Functional connectivity bilateral dorsolateral prefrontal cortices 9 WAIS Normal Stepwise linear regression FSIQ is correlated to the functional connectivity in bilateral dorsolateral prefrontal cortices (r = 0.47; p = 0.0002).
Kwak et al.123 2021 795 46-96 OASIS-3, KSHAP T1-w,
fMRI
Functional connectivity from BOLD signals Region of frontoparietal network and central brain 9, 4, 39, 40, 46, 10, 13, 1, 2, 3 MMSE Normal Ridge regression Correlation between behavioral test scores and FC-predicted score is 0.12~0.44 (p < 0.001).
Finn et al. 124 2015 126 22-35 Human Connectome Project (HCP) fMRI Positive and negative edges, frontoparietal networks Frontoparietal region 9, 4, 39, 40, 46, 10, 13 Raven's Progressive Matrices Normal CPM Correlation between actual and estimated gF is 0.5 (p < 0.01)
Powell et al. 125 2017 841 22-37 HCP fMRI Voxel-wise local structural connectome Region of frontoparietal network 9, 4, 39, 40, 46, 10, 13 NIH-TCB Normal LASSO Principal Component Regressor Correlation between the actual and predicted NIH picture sequence memory test is 0.097 (p < 0.001)
Sripada et al. 126 2020 2013 9-10 ABCD fMRI Resting-state functional connectivity pattern Default mode network, frontoparietal network, salience network, dorsal attention network 8, 9, 10, 21, 28, 36, 23, 24, 32, 29, 30, 31, 39, 40 NIH-TCB Normal Brain basis set (BBS) modeling (combination of PCA and linear regression) General neurocognitive ability score is highly correlated to the mentioned networks (r = 0.31; p < 0.0001)
Jiang et al. 127 2017 360 17-24 University of Electronic Science and Technology, China fMRI Functional connectivity Superior frontal gyrus, inferior and superior parietal lobules
10, 11, 12, 39, 40, 7 WAIS-RC Normal RelieF+LASSO Correlation between actual and estimated FSIQ is 51% (p < 0.001)
Hart et al.128 2006 25 14-29 UNC Pediatric Endocrinology Turner Syndrome Clinic fMRI Activated voxels in fMRI Left and right middle frontal gyri, inferior frontal gyri, intraparietal sulci and inferior temporal gyri 10, 44, 45, 47, 20 WASI Normal/
abnormal
ANOVA Individuals with Turner syndrome and controls had significantly different verbal IQs (p < 0.0001)
Greene et al. 129 2018 1086 8-36 HCP, Philadelphia Neurodevelopmental Cohort (PNC) fMRI Whole brain functional connectivity Cortical and subcortical grey matter, cerebellum Not specified Raven's Progressive Matrices Normal CPM
Correlation between actual and estimated gF is 19% in resting state (p = 0.039)
He et al. 131 2018 9821 22-69 HCP, UK-Biobank fMRI Functional Connectivity Matrix Whole-brain spatially independent components Not specified Raven's Progressive Matrices Normal Kernel Regression, Feedforward NN, CNN Correlation between actual and estimated gF is 23.9% (p < 0.001) using the Kernel regression
Li et al. 132 2018 100 - HCP fMRI Amplitude of low-frequency fluctuation of left anterior cingulate cortex Right prefrontal cortex, left anterior cingulate cortex 8, 24, 32, 33 Raven's Progressive Matrices Normal Support vector regressor Correlation between actual and estimated gF is 32.5% (p = 0.031)
Dubois et al. 133 2018 884 22-36 HCP fMRI Functional Connectivity Matrix Cortical and subcortical grey matter Not specified Raven's Progressive Matrices Normal Univariate correlation filtering + Elastic net regression Correlation between actual and estimated gF is 22% using the univariate model (p < 0.001)
Yoo et al. 134 2019 575 22-56 HCP fMRI Functional Connectivity Matrix Regions of frontoparietal and default mode networks 9, 4, 39, 40, 46, 10, 13, 38, 25, 23, 31 Raven's Progressive Matrices Normal CPM-based Multivariate distance correlation Correlation between actual and estimated cognitive ability is 9.5% (p < 0.01)
Noble et al. 135 2017 618 22-56 HCP fMRI 10 functionally coherent networks Whole gray matter Not specified Raven's Progressive Matrices Normal CPM Correlation between actual and estimated gF is 22% (p < 0.0001)

Opportunities and Challenges

Precision and Individual Variability. Earlier studies associated MRI metrics with neurocognition in a population. Population-level association does not explain individual variability. There is a need to use MRI to estimate or predict neurocognition for individual subjects. A fundamental question remains open for which MRI metrics, out of hundreds of s/d/fMRI metrics, from which neuroanatomy, carry the neurocognitive information for individual differences. The answers to this question may vary by the neurocognitive domains.
Neuroscientific Interpretation. Sex differences exist widely in diseases136 and in normal brain MRIs.137 Hemispheric differences exist and contribute to brain development. Besides sex and hemispheric differences, brain development presents spatial and temporal heterogeneity. Spatially, maturation occurs in a posterior-to-anterior and inferior-to-superior direction138,139. Temporally, sensory and motor cortices develop earlier, while the prefrontal, amygdala, and hippocampus continue to get matured during adolescence139,140, and working memory141 and reasoning142 continue to evolve over childhood and adolescence. Yet, it remains open to ‘localizing’ the regional brain biomarkers in space, in time, and specific to sex, age, and brain hemisphere. Elucidating the neural substrate of inter-individual intelligence difference will also differ across neurocognitive domains.
Nature and nurture beyond MRI data. A mystery is which extent is human intelligence or neurocognition decided by nature (i.e., genetics) and by nurture. For nurture, social upbringing143 and neighborhood environment144 have effects on neurodevelopment, so do demographics (age, sex, body mass index or BMI, etc.), lifestyle (smoking, alcohol, reading, exercise, etc.), nutrition, socioeconomic status (education, income, etc.), and other factors. Thus, we need to combine MRI with other nature and nurture data to better understand individual variability in neurocognition.3,145–150 There are technical challenges for (i) how to best combine 3D MRIs with 1D non-MRI features151; (ii) how to identify the best subset of variables that best estimate neurocognitive abilities152,153; and (iii) eventually quantify the contribution of nature versus nurture.
Merging Datasets. Artificial intelligence requires a large training dataset, which, for brain MRI, means 1,000 or more subjects.154 Recent studies have combined public or private datasets to form a large database of thousands or even tens of thousands of brain MRIs, for age prediction,155,156 quantification of normal brain development,131 genotype-phenotype mapping157 and other tasks. We have found at least 38 public datasets with a total of about 35,000 unique individuals with both brain MRIs and neurocognitive/intelligence test scores (Table 2). Challenges arise, however, for (a) multi-site, multi-scanner, multi-protocol MRI harmonization; (b) dealing with different types or versions of neurocognitive tests as used in different datasets; (c) tackling uncertainties in the test scores for neurocognition/intelligence; and (d) coping with incompleteness or inconsistency in other variables (demographics, socioeconomic status, genetics, environment, etc.) across datasets.
Table 2. We have found at least 38 public datasets with a total of about 35,000 unique individuals with both brain MRIs and neurocognitive/intelligence test scores.
Table 2. We have found at least 38 public datasets with a total of about 35,000 unique individuals with both brain MRIs and neurocognitive/intelligence test scores.
Preprints 69356 g012
Evaluation of the Present versus Prediction of the Future. Predicting future neurocognitive outcomes and intelligence level is more difficult but as, if not more, important than evaluating the current status. Early prediction of later-life neurocognitive outcomes will create a precious time window for early intervention.7,8 It will identify high-risk patients for targeted intervention, avoiding unnecessary interventions for patients at low risk for future neurocognitive impairments.158 Both the early and the targeted interventions are key unmet needs in clinical trials that aim to improve patients’ long-term neurocognitive outcomes.8,159 For the last three decades, there have been many studies that used medical imaging (e.g., MRI) and computer-aided mathematical models (e.g., multivariate analysis, machine learning, deep learning, etc.) to identify neurocognitive impairments in patients with various diseases, e.g., traumatic brain injuries,160 schizophrenia,161 Alzheimer's Disease,162 and diabetes.163 Yet, predicting normal and abnormal neurocognitive development trajectories remains a largely unanswered question.
Linking Healthy and Diseased. Do machine intelligence models that predict human intelligence in normal controls help us to predict abnormal neurocognitive outcomes in diseased populations? Do neurocognitive outcome prediction models share similar MRI and non-MRI features across diseases? Current studies are mostly on diseased populations but studying one specific disease at a time. Linking healthy and diseased, or merging data across diseases, may offer new insight for the common support of normal and abnormal neurocognitive development.

Conclusion

In this paper, we reviewed different MRI studies to infer neurocognitive or human intelligence. While existing reviews are often on specific disease populations,164–167 our review focuses primarily on healthy subjects but has included various disease-specific MRI findings. We observed several trends in this research direction: population-level association studies are transitioning to individual-level machine learning predictions, single MRI sequence research is giving ways to multi-modal MRI research, multi-omics approaches integrating MRI with rich non-MRI information are merging from MRI-alone investigations, bigger sample sizes (thousands or tens of thousands) by merging datasets are fast increasing compared to small sample size studies (dozens to hundreds) from a single dataset. Despite growing efforts and expanding knowledge, the decades-long topic of machine intelligence inferring human intelligence remains little understood in general. Opportunities exist with the rise of big data and AI, but several major neuroscientific and data science challenges call for further investigations.

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Figure 2. Domains scored by the NIH toolbox neurocognitive battery.
Figure 2. Domains scored by the NIH toolbox neurocognitive battery.
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Figure 4. Bar plot representing of the proportion of our reviewed sMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. Shaded BA numbers are part of the P-FIT model. Brodmann areas are not specified for either left or right hemisphere. Studies that did not specify BAs are also included in the normalization.
Figure 4. Bar plot representing of the proportion of our reviewed sMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. Shaded BA numbers are part of the P-FIT model. Brodmann areas are not specified for either left or right hemisphere. Studies that did not specify BAs are also included in the normalization.
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Figure 5. Bar plot representing of the proportion of our reviewed fMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. Shaded BA numbers are part of the P-FIT model. Brodmann areas are not specified for the either left or right hemisphere. Studies that did not specify BAs are also included in the normalization.
Figure 5. Bar plot representing of the proportion of our reviewed fMRI papers that used different Brodmann areas in inferring intelligence and neurocognition. Shaded BA numbers are part of the P-FIT model. Brodmann areas are not specified for the either left or right hemisphere. Studies that did not specify BAs are also included in the normalization.
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