Submitted:
19 April 2023
Posted:
20 April 2023
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ID Code | Ligand Name | ID Code | Ligand Name |
---|---|---|---|
2236 | Aristolochic acid | 11672 | Curcumin |
15573 | α-Pinene | 8815 | Estragole |
70678558 | α-Copaene | 2758 | Eucalyptol |
5281520 | α-Humulene | 09086 | Eugenol |
7460 | α-Phellandrene | 7461 | γ-Terpinene |
10856614 | α-Selinene | 6549 | Linalool |
10545 | Ascaridole | 31253 | Myrcene |
5281515 | (E)-β-caryophyllene | 319084028 | 1,6-Octadiene |
11142 | β-Phellandrene | 71742210 | Caryophyllene oxide |
14896 | β-Pinene | 7463 | ρ-Cymene |
442393 | β-Selinene | 439570 | (R)- (-)-Carvone |
7001 | 1-Bromonaphthalene | 16724 | (S)- (+)-Carvone |
01744 | Camphor | 440917 | R-Limonene |
10364 | Carvacrol | 439250 | S-Limonene |
6616 | Camphene | 18818 | Sabinene |
5320128 | cis-Nerolidol | 02513 | Thymol |
7794 | Citronellal |
ID PDB | Therapeutic target | Coordinates (x, y, z) |
---|---|---|
2AZ5 | Tumor necrosis factor-α (TNFα) | -19.259, 74.79, 34.032 |
1ALU | Interleukin-6 (IL6) | -3.934, -18.113, 3.394 |
5IKQ | Cyclooxygenase-2 (COX2) | 22.222, 52.346, 18.018 |
4OEE | Fibroblast growth factor-2 (FGF2) | -11.744, -6.027, -3.03 |
1Q5K | Glycogen synthase kinase-3β (GSK3β) | 23.992, 22.827, 8.884 |
2ZM3 | Insulin-like growth factor 1 (IGFR1) | 37.061, 79.097, 58.051 |
2D1O | Matrix metalloproteinases (MMP3) | 28.762, 6.733, 14.320 |
1GKC | MMP9 | 48.145, 64.140, 42.896 |
2PJT | MMP13 | 9.323, 27.639, 141.777 |
3HNG | Vascular endothelial growth factor receptor-1 (VEGFR1) | 4.729, 17.729, 33.352 |
Ligand | Target | ||
---|---|---|---|
MMP-3 | MMP-13 | TNFα | |
Co-crystallized ligand | -51.755 +/- 4.118 | -29.563 +/- 3.255 | -48.432+/- 3.139 |
Aristolochic acid | -57.820 +/- 5.573 * | -56.075 +/- 5.712 * | -25.796+/- 2.176 * |
α-Copaene | -17.447 +/- 1.967 * | -21.081 +/- 2.193 * | -26.874 +/- 2.083 * |
α-Selinene | -28.741 +/- 2.063 * | -20.222 +/- 4.226 * | -19.417 +/- 1.808 * |
β-Caryophyllene | -17.432 +/- 2.554 * | -23.419 +/- 2.948 * | -26.386 +/- 1.686 * |
β-Selinene | -17.107 +/- 2.168 * | -24.646 +/- 2.489 * | -24.303 +/- 2.188 * |
Caryophyllene oxide | no interaction | -27.980 +/- 1.989 * | -25.709 +/- 2.216 * |
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