Chemicals and Reagents
Fresh beetroots were obtained from a supermarket in Greensboro, NC, USA. Methanol, HPLC grade chloroform and hexane were purchased from Fisher-scientific, MA, USA. Deuterated chloroform (CDCl3) with 1% v/v 3-(Trimethylsilyl)propionic-2, - 3-(Trimethylsilyl)prop-98 atom % D (TSP) was obtained from Acros Organics, NJ, USA. Optima grade water and Acetonitrile for LCMS were obtained from Fisher-Scientific, MA, USA. Sodium phosphate dibasic (Na2HPO4, 99.0%) was obtained from Alfa Aesar, Japan; sodium phosphate monobasic (NaH2PO4, 99.0%), and sodium azide 99% extra pure were obtained from Acros Organics, NJ, USA. L-lysine (C6H14N2O2, 98.5%), L-leucine (C6H13NO2, 98.5%), L-histidine (C6H9N3O2, 98.5%), L-phenylalanine (C9H11NO2, 98.5%) and sucrose (C12H22O11) were purchased from Fisher BioReagents.
Instrumental
UV-Vis: A small portion of the polar extract was dissolved in 4 ml of sodium phosphate buffer. The UV-VIS absorption spectrum was recorded in the range 250-750 nm on a Shimadzu UV-2501 PC Spectrophotometer in quartz cuvettes in the absorption mode where sodium phosphate buffer was the reference.
GC-MS: The methyl esterification of the non-polar phase was carried out using the standard method [
24]. GC-MS data were acquired on an Agilent 7890A 7693 Autosampler. For the GC system, an Agilent GC HP-5 capillary column (30.0 m length, 0.25 mm i.d., 0.10 µm film thickness) was used. The temperature program was set up starting at 100°C for 3 mins and programmed to increase to 200°C for 1 min, and ramped up to 250°C at 10°C/min, and remained at 250°C for 10 mins for a total program time of 15 min. Both the injector and detector temperatures were 250°C and Helium gas was used as carrier gas. The injection volume was 2µL. Ionization was by electron impact (EI) and Ionization energy, IE of 70 eV was used for mass spectroscopy detector, with a source temperature at 230°C and transfer line temperature of 250°C. The scan range of the fragments was set to 40-500 amu. The fragmentation pattern in the experimental mass spectra were compared with the NIST20.L Mass Spectral Library. Data was acquired using GC-MS acquisition software (mass hunter qualitative analysis 10.0).
LC-MS: Liquid chromatography separation of the metabolites in polar phase was performed on a Thermo Fisher Q Exactive Plus Mass Spectrometer coupled to a Waters Acquity Ultra-Performance Liquid Chromatography system using Waters Acquity HSS (100 mm x 2.1 mm) columnA. 3 µL sample injection was eluted at 0.4 mL/min from the column using a binary solvent system consisting of 0.1% formic acid in water (mobile phase A) and 0.1% formic acid in acetonitrile (mobile phase B). The gradient program is as follows: 0-1 min 100% A, 1-11 min 100% A - 0% A, 11-13.1 min 0% A - 100% A, and 13.1-15 min 100% A. The LC eluent was directed into, without splitting, a Thermo Fisher Q Exactive Plus mass spectrometer fitted with a Heated Electrospray ion (HESI) source, and the MS was operated using the following parameters: source, heated electrospray ionization (HESI); polarity, Pos/Neg switching; capillary voltage, 2500 V; capillary temperature, 262.5◦C; sheath gas 50L/min; auxiliary gas and spare gas set at 12.5 and 2.5 units respectively; heater temperature, 425 °C. The LC-MS were acquired over a scan range of 75-1125 amu.
NMR: Deuterated chloroform (CDCl
3) with 1% TSP as internal reference (0 ppm) was used to dissolve the non-polar phase. The polar phase was dissolved in sodium phosphate buffer (pH 7.4) that contains TSP and 0.5% sodium azide in 90% water/10% D
2O. The NMR spectra were acquired on a Bruker Ascend 400 MHz spectrometer at 25 °C. Standard 1D NOESY pulse sequence (with HDO presat pulse for the polar phase) was used to acquire the
1H spectrum. 1D selective TOCSY data were collected using homonuclear Hartman-Hahn (HOHAHA) transfer pulse sequence where MLEV17 sequence was used for mixing and the selective excitation was obtained using a shaped pulse and Z-filter [
25] with varying mixing times (0.03, 0.08, 0.12 seconds); number of scans was set to 256. The data were processed with LB of 0.1-1.0 Hz. Two-dimensional NMR correlation spectroscopy (COSY) spectra were acquired using standard non-phase sensitive sequence (2D homo-nuclear shift correlation [
26]). Data were collected with 2kX256 data points matrix, then zero-filled to 2KX1K data points matrix. Total COSY (TOCSY) 2D spectra were acquired using phase sensitive homonuclear Hartman-Hahn (HOHAHA) transfer using MLEV17 sequence for mixing [
27] with 2KX256 data points, and zero filled to 2KX1K data point matrix.
1H-
13C single quantum correlation (SQC) data were acquired using the phase sensitive, 2D H-1/X correlation via double inept transfer using sensitivity improvement pulse sequence [
28]. Data were acquired in 2KX256 data points and zero-filled to 2KX1K data points.
Results and Discussion
(I) Extraction:
Based on four trials, the extraction data indicate that the average percentages of the aqueous and organic phases are 33.50 and 3.05, respectively. The average percentage of the middle solid layer that contains compounds that are not soluble in water/methanol or in chloroform is 63.45.
(lI) Aqueous (polar) Phase:
The UV-Vis spectrum of the aqueous phase in
Figure 1 shows the two signals corresponding to the two forms of the betalain pigment: the red-purple betacyanins at 538 nm and the yellow betaxanthins at 484 nm [
17]. The relative intensity of the two signals in
Figure 1 is consistent with the higher composition of the red-purple betacyanins relative to that of the yellow betaxanthins [
17].
Figure 2 Shows the MS fragmentation spectrum of the compounds in the aqueous extract of beetroot powder in positive polarity mode. The major difference in ionizability of the identified twenty compounds in the polar phase (
Table 1) rendered the intensity of the signals in the LC-MS spectrum to be widely varied (
Figure 2). Most identified compounds by LC-MS data were found by searching for their corresponding ions in the positive mode.
Table 1 lists the identified compounds in the polar extract from the LC-MS results (
Figure 2) and the standards when applicable. Fourteen amino acids were identified. The NMR signals corresponding to some of these amino acids were also identified, as shown below.
Figure 3 shows the
1H NMR spectrum of the aqueous extract that indicates the significant variance in the composition of the different compounds where the intensity of the signals corresponding to the aromatic compounds is much less than the intensity of the signals corresponding to other compounds such as sugars and amino acids. Insert A in
Figure 3 shows an expansion of the upfield region of the 1D NMR spectrum between 0.5 and 3.2 PPM, and insert B shows the region of the spectrum where aromatic compounds resonate.
Figure 4 is the section of 2D TOCSY spectrum of the aqueous extract that exhibits spin coupling between C
1H of sucrose and the other protons in it. The spectrum also shows the cross peaks corresponding to coupling of C
1H proton in the α- and β- forms of D-glucopyranose to other protons in them. The intensity of the C
1H signal of both forms of D-glucopyranose is lower than that of C
1H of sucrose (
Figure 4).
Table 2 lists the chemical shift of the identified protons in the two sugars and the corresponding literature chemical shift values [
31].
Figure 5 is the section of 2D HSQC spectrum that shows the
1H/
13C correlation corresponding to sucrose; the chemical shift values of the sucrose
13C signals are listed in
Table 2 along with the corresponding literature values.
Figure 6 shows the section of COSY spectrum that exhibits the spin coupling between the two methyl groups of valine and C
2H proton.
Figure 7 and
Figure 8 show the sections of COSY spectrum that exhibit spin coupling corresponding to the isoleucine.
Figure S1 in the supplementary material shows combined sections from the COSY spectrum of the aqueous phase that display the coupling corresponding to leucine.
Table 3 lists the chemical shift of the identified protons in the three amino acids and the corresponding literature chemical shift. It is interesting to note the similarity between the chemical shift of
1H and
13C signals of all identified compounds and the literature data (
Table 2 and
Table 3) where the reported chemical shift values in the literature are based on the acquired spectra of these compounds alone, indicating that there is no significant matrix effect on the chemical shift. Many of the bioactive compounds in beetroots such as flavonoids and p-coumaric acid are aromatic compounds. The 1D NMR spectrum in
Figure 3 and insert B show that the intensity of the signals corresponding to the aromatic compounds being much lower than that of the sugar signals which are in the range of 3 to 5.5 PPM. This indicates the lower composition of the aromatic compounds which made detecting the spin systems corresponding to them including the pigment’s signals difficult even while using 1D selective TOCSY technique which is more sensitive than 2D NMR techniques
. The section of 2D TOCSY spectrum in
Figure 4 indicates that the intensity of the C
1H signals of α- and β- forms of D-glucopyranose in the 1D spectrum are lower than that of C
1H of sucrose. This indicates higher composition of sucrose relative to α- and β-D-glucopyranose in beetroots, which is consistent with the literature [
32]. It is interesting to note that a part of the betacyanins dye is a D-glucopyranose-like six-member ring [
17] which means that some of the observed couplings in
Figure 4 could belong to the betacyanins pigment. The relative intensity of C
1H signals of α- and β- forms of D-glucopyranose in
Figure 4 is consistent with literature indicting that the β form is more abundant than the α form [
33]. Insert A in
Figure 3 shows the significant overlap of signals in the ppm range of 0.90 to 1.05 ppm where the methyl groups usually resonate.
Figure 6, Figure 7,
Figure 8 and
Figure S1 show how 2D NMR experiments can be utilized efficiently to identify some of the molecules that these methyl groups belong to. The figures also indicate how NMR techniques can efficiently complement LC-MS data.
(llI) Organic Phase
Figure 9 shows the GC-MS chromatogram of the organic extract of dried beets after chemically converting the fatty acids to methyl esters; the retention time of the eluted compounds ranges between 6.50–25.50 min. For the identification of fatty acids methyl esters (FAME), and other compounds in the organic phase, retention times and the MS ionization spectra of the experimental data were compared with the corresponding spectra from NIST20 library[
24]. For example,
Figure 10 shows the MS experimental and NIST20 library spectra of 9,12-Octadecadienoic acid methyl ester (RT 10.359 min.).
Figures S2, S3, S4, and S5 in the supplementary material show the matching spectra for Linolenic acid, Oleic acid, Stearic acid, and Palmitic acid respectively. The similarity between the fragments in the two MS spectra was reported as matching/similarity score.
Table 4 lists the identified compounds in the organic phase along with their molecular formula and their corresponding retention times, base peak signal-to-noise ratio, base peak area, and the similarity scores being 88% and above.
Figure 11A shows the section of
1H NMR spectrum of the organic phase, while
Figure 11B and C are the selective TOCSY spectra that were used to identify the spin coupling in linoleic and oleic acids, respectively[
34]. The peak at 5.36 ppm corresponds to the olefinic protons (protons 9, 10, 12, 13) in linoleic acids and protons 9 and 10 of oleic acid. The peak at 2.77 ppm corresponds to the bis-allylic CH
2 protons (group 11) in linoleic acid. The signal corresponding to methylene CH
2 protons, designated as 2 in both fatty acids, shows at 2.31 ppm. When the peak at 2.31 ppm is selectively excited (
Figure 11B), the predicted spin coupling correlations to the following groups in linoleic acid are observed: 5.36 ppm (groups 9, 10, 12, 13), 2.77 ppm (bis-allylic CH
2: group 11), 2.06 ppm (allylic protons: groups 8 and 14), 1.59 ppm (group 3), and 1.32 ppm (the other overlapping methylene CH
2 groups). When the peak at 1.59 ppm (proton 3) in oleic acid is selectively excited (
Figure 11 C), the predicted spin coupling to the following groups in are observed: 5.36 ppm (groups 9 and 10), 2.31 ppm (group 2), 2.06 ppm (groups 8 and 11), and 1.31 ppm (the other overlapping methylene groups). The identification of some metabolites in beetroot in the non-polar extract was achieved by GC-MS analysis in combination with NMR. This extract contains a mixture of saturated and unsaturated fatty acids in addition to other organic compounds. When the side chain of the fatty acid contains unsaturated carbon(s), 1D selective TOCSY NMR experiment can be used to identify the NMR signals corresponding to these fatty acids as shown in
Figure 11. Still, the overlap of signals belonging to protons from such fatty acids (linolenic, linoleic and oleic acids in beetroot) may make the identification difficult.