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A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Target | Primer pair | Sequence (5’−3’) | Size (bp) | Reference |
---|---|---|---|---|
mcyA | mcyA-Cd1F mcyA-Cd1R |
AAAATTAAAAGCCGTATCAAA AAAAGTGTTTTATTAGCGGCTCAT |
297 | [32] |
mcyE | HEPF HEPR |
TTTGGGGTTAACTTTTTTGGGCATAGTC AATTCTTGAGGCTGTAAATCGGGTTT |
472 | [26] |
sxtA | sxtA855F sxtA1480R |
GACTCGGCTTGTTGCTTCCCC GCCAAACTCGCAACAGGAGAAGG |
648 | [31] |
sxtG | sxtG432F sxtG928R |
AATGGCAGATCGCAACCGCTAT ACATTCAACCCTGCCCATTCACT |
519 | [31] |
sxtI | sxtI 682F sxtI 877R |
GGATCTCAAAGAAGATGGCA GCCAAACGCAGTACCACTT |
200 | [27] |
cyrJ | cynsulF cylnamR | ACTTCTCTCCTTTCCCTATC GAGTGAAAATGCGTAGAACTTG |
584 | [28] |
anaC | anaC-genF anaC-genR |
TCTGGTATTCAGTCCCCTCTAT CCCAATAGCCTGTCATCAA |
366 | [29] |
Isolates | Trichome description | Cell description | Dimensions (µm) |
G. amphibium CR1; CR2; CR3; CR4 |
Bright blue-green trichomes, motile, without sheaths, more less straight, not constricted at cross walls | Cells cylindrical | L= 1.44–4.73 W= 1.38–2.92 |
L. nigra CR5 | Straight or slightly curved trichomes, constricted at the cross-walls, with calyptras, isopolar with sheaths. Sheaths thin and firm open at the end, colorless or bluish | Cells short, discoid, with granular content and aerotopes | L= 1.95–5.15 W= 12.82–17.84 |
L. stagnina CR6 | Trichomes isopolar. Sheaths thin and firm, distinct, colorless, open at the ends. Filaments constricted at cross-walls and motile by gliding | Cells grayish blue-green, distinctly shorter than wide | L= 1.9–5.2 W= 13.00–19.36 |
L. cincinnata CR7 | Cylindrical, slightly waved trichomes, constrictions at cross wall, isopolar. Sheaths firm, thick, colorless, lamellated and opened | Cells discoid, cell content is granulated, aerotops are rare | L= 2.09–4.62 W= 13.46–19.66 |
Microcoleus sp. CR8 | Wavy or screw-like coiled trichomes, constricted at cross walls, motile, isopolar and delimited by firm and thickened sheaths, homogenous, open at the ends, hyaline | Cells mostly isodiametric or slightly longer than wide with aerotopes. Apical cells are conical without calyptras | L= 3.09–6.02 W= 3.08–5.17 |
P. rosea CR9 | Straight or slightly curved trichomes, reddish violet, without sheath, with constrictions at the cross walls | Cells cylindrical without aerotops | L= 1.67–3.89 W= 1.61–2.67 |
Isolates | Colony description | Mucilage | Cell description | Cell diameter (µm) |
Aphanothece sp. CR10 | Irregular, microscopic to macroscopic colonies, blue-green | Thin, colorless mucilage and distinct at the margin | Cells mainly spherical or oval, with gas vesicle, bright blue-green content, and delimited with individual envelopes. Envelopes are firm, colored in dark blue-green |
1.07–1.98 |
Aphanothece sp. CR11 | Spherical colonies, rough in outline, microscopic, free-living, forming macroscopic granular agglomerations | Mucilage colorless and homogeneous, delimited at the margin, and follows the irregular outline of the colony, not diffluent, without a refractive outline | Cells spherical, pale or bright blue-green, slightly distant from one another, having fine granulation, without gas vesicles, and enveloped by thin individual layer | 0.90–1.36 |
Microcystis sp. CR12 |
Colonies macroscopic, lenticular, slightly elongate, three-dimensional, agglomerated in macroscopic, free-floating, gelatinous, blue-green masses | Narrow, colorless mucilage, distinctly delimited along cell agglomerations and forming refractive outline | Cells spherical, densely aggregated, with individual envelopes, content is homogeneous, olive green or brownish with aerotopes | 4.02–5.97 |
M. flos-aquae CR13 | Spherical colonies, with irregular margin, microscopic to macroscopic, free-floating, compact, or clathrate, with densely irregularly arranged cells gathered in small agglomerations | Mucilage colorless, slightly distant from cell clusters, and delimited by slightly refractive outline | Cells spherical or hemispherical after division, with individual thick envelopes. Cell content appears granular, olive green, or brownish, with aerotopes |
3.98–5.77 |
Isolates | Closest Match (Accession Number) | Query coverage (%) | Percent identity (%) |
---|---|---|---|
G. amphibium CR1 | Geitlerinema amphibium I013-0021 (KY550458) | 82 | 99.39 |
Anagnostidinema amphibium NRERC-450 (MN179486) | 98 | 99.13 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 98 | 99.13 | |
Limnothrix sp. B15 (GQ848190) | 98 | 99.13 | |
G. amphibium CR2 | Geitlerinema amphibium I013-0021 (KY550458) | 83 | 99.74 |
Pseudanabaena westiana NRERC-303 (MN145866) | 99 | 99.56 | |
Limnothrix sp. B15 (GQ848190) | 100 | 99.56 | |
Anagnostidinema amphibium NRERC-451 (MN179485) | 100 | 99.49 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 96 | 97.59 | |
G. amphibium CR3 | Geitlerinema amphibium I013-0021 (KY550458) | 85 | 99.91 |
Anagnostidinema amphibium NRERC-450 (MN179486) | 100 | 99.70 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 100 | 99.70 | |
Limnothrix sp. B15 (GQ848190) | 100 | 99.70 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 97 | 97.71 | |
G. amphibium CR4 | Geitlerinema amphibium I013-0021 (KY550458) | 85 | 99.91 |
Limnothrix sp. B15 (GQ848190) | 100 | 99.85 | |
Anagnostidinema amphibium NRERC-450 (MN179486) | 100 | 99.70 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 100 | 99.70 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 98 | 97.73 | |
L. nigra CR5 | Phormidium cf. irriguum CCALA 759 (FN813343) | 99 | 99.85 |
Oscillatoria sp. UIC 10045 (KF444211) | 93 | 99.35 | |
Lyngbya martensiana H3b/33 (JN854141) | 95 | 97.78 | |
L. stagnina CR6 | Phormidium cf. irriguum CCALA 759 (FN813343) | 97 | 99.85 |
Oscillatoria sp. UIC 10045 (KF444211) | 90 | 99.28 | |
Lyngbya martensiana H3b/33 (JN854141) | 92 | 97.73 | |
L. cincinnata CR7 | Phormidium cf. irriguum CCALA 759 (FN813343) | 97 | 99.63 |
Oscillatoria sp. UIC 10045 (KF444211) | 91 | 99.04 | |
Lyngbya martensiana H3b/33 (JN854141) | 93 | 97.50 | |
Microcoleus sp. CR8 | Microcoleus sp. HTT-U-KK5 (EF654070) | 99 | 99.40 |
P. rosea CR9 | Pseudanabaena limnetica Lim1 (LC434121) | 100 | 99.27 |
Limnothrix redekei CCAP 1459/29 (HE974998) | 100 | 99.05 | |
Arthronema gygaxiana UTCC 393 (AF218370) | 100 | 98.39 | |
Aphanothece sp. CR10 | Synechococcus sp. CACIAM 66 (MG272380) | 100 | 99.11 |
Cyanobium sp. JJM10D4 (AM710359) | 100 | 98.96 | |
Aphanothece minutissima 2LT34S03 (FM177488) | 100 | 97.41 | |
Microcystis elabens (AB001724) | 100 | 97.26 | |
Aphanothece sp. 4SS (MH341432) | 86 | 97.79 | |
Aphanothce sp. CR11 | Synechococcus sp. CENA108 (EF088334) | 100 | 98.96 |
Cyanobium sp. JJ22K (AM710364) | 100 | 98.30 | |
Cyanobacterium DC-1 (JF966674) | 100 | 98.30 | |
Cyanodictyon sp. JJCD (AM710382) | 100 | 98.22 | |
Aphanocapsa salina SAG 33.79 (KM020007) | 100 | 98.07 | |
Aphanothece sp. 4SS (MH341432) | 87 | 97.89 | |
Microcystis sp. CR12 | Synechococcus sp. CENA108 (EF088334) | 100 | 98.08 |
Cyanobium sp. JJM10D5 (AM710380) | 100 | 98.00 | |
M. flos-aquae CR13 | Microcystis flos-aquae CHAB541 (KJ818189) | 100 | 99.77 |
Sphaerocavum brasiliense CCIBt3094 (KY460548) | 100 | 99.32 | |
Synechocystis sp. SAG 45.90 (KM019995) | 100 | 99.47 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Submitted:
03 October 2023
Posted:
05 October 2023
You are already at the latest version
A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Submitted:
03 October 2023
Posted:
05 October 2023
You are already at the latest version
Target | Primer pair | Sequence (5’−3’) | Size (bp) | Reference |
---|---|---|---|---|
mcyA | mcyA-Cd1F mcyA-Cd1R |
AAAATTAAAAGCCGTATCAAA AAAAGTGTTTTATTAGCGGCTCAT |
297 | [32] |
mcyE | HEPF HEPR |
TTTGGGGTTAACTTTTTTGGGCATAGTC AATTCTTGAGGCTGTAAATCGGGTTT |
472 | [26] |
sxtA | sxtA855F sxtA1480R |
GACTCGGCTTGTTGCTTCCCC GCCAAACTCGCAACAGGAGAAGG |
648 | [31] |
sxtG | sxtG432F sxtG928R |
AATGGCAGATCGCAACCGCTAT ACATTCAACCCTGCCCATTCACT |
519 | [31] |
sxtI | sxtI 682F sxtI 877R |
GGATCTCAAAGAAGATGGCA GCCAAACGCAGTACCACTT |
200 | [27] |
cyrJ | cynsulF cylnamR | ACTTCTCTCCTTTCCCTATC GAGTGAAAATGCGTAGAACTTG |
584 | [28] |
anaC | anaC-genF anaC-genR |
TCTGGTATTCAGTCCCCTCTAT CCCAATAGCCTGTCATCAA |
366 | [29] |
Isolates | Trichome description | Cell description | Dimensions (µm) |
G. amphibium CR1; CR2; CR3; CR4 |
Bright blue-green trichomes, motile, without sheaths, more less straight, not constricted at cross walls | Cells cylindrical | L= 1.44–4.73 W= 1.38–2.92 |
L. nigra CR5 | Straight or slightly curved trichomes, constricted at the cross-walls, with calyptras, isopolar with sheaths. Sheaths thin and firm open at the end, colorless or bluish | Cells short, discoid, with granular content and aerotopes | L= 1.95–5.15 W= 12.82–17.84 |
L. stagnina CR6 | Trichomes isopolar. Sheaths thin and firm, distinct, colorless, open at the ends. Filaments constricted at cross-walls and motile by gliding | Cells grayish blue-green, distinctly shorter than wide | L= 1.9–5.2 W= 13.00–19.36 |
L. cincinnata CR7 | Cylindrical, slightly waved trichomes, constrictions at cross wall, isopolar. Sheaths firm, thick, colorless, lamellated and opened | Cells discoid, cell content is granulated, aerotops are rare | L= 2.09–4.62 W= 13.46–19.66 |
Microcoleus sp. CR8 | Wavy or screw-like coiled trichomes, constricted at cross walls, motile, isopolar and delimited by firm and thickened sheaths, homogenous, open at the ends, hyaline | Cells mostly isodiametric or slightly longer than wide with aerotopes. Apical cells are conical without calyptras | L= 3.09–6.02 W= 3.08–5.17 |
P. rosea CR9 | Straight or slightly curved trichomes, reddish violet, without sheath, with constrictions at the cross walls | Cells cylindrical without aerotops | L= 1.67–3.89 W= 1.61–2.67 |
Isolates | Colony description | Mucilage | Cell description | Cell diameter (µm) |
Aphanothece sp. CR10 | Irregular, microscopic to macroscopic colonies, blue-green | Thin, colorless mucilage and distinct at the margin | Cells mainly spherical or oval, with gas vesicle, bright blue-green content, and delimited with individual envelopes. Envelopes are firm, colored in dark blue-green |
1.07–1.98 |
Aphanothece sp. CR11 | Spherical colonies, rough in outline, microscopic, free-living, forming macroscopic granular agglomerations | Mucilage colorless and homogeneous, delimited at the margin, and follows the irregular outline of the colony, not diffluent, without a refractive outline | Cells spherical, pale or bright blue-green, slightly distant from one another, having fine granulation, without gas vesicles, and enveloped by thin individual layer | 0.90–1.36 |
Microcystis sp. CR12 |
Colonies macroscopic, lenticular, slightly elongate, three-dimensional, agglomerated in macroscopic, free-floating, gelatinous, blue-green masses | Narrow, colorless mucilage, distinctly delimited along cell agglomerations and forming refractive outline | Cells spherical, densely aggregated, with individual envelopes, content is homogeneous, olive green or brownish with aerotopes | 4.02–5.97 |
M. flos-aquae CR13 | Spherical colonies, with irregular margin, microscopic to macroscopic, free-floating, compact, or clathrate, with densely irregularly arranged cells gathered in small agglomerations | Mucilage colorless, slightly distant from cell clusters, and delimited by slightly refractive outline | Cells spherical or hemispherical after division, with individual thick envelopes. Cell content appears granular, olive green, or brownish, with aerotopes |
3.98–5.77 |
Isolates | Closest Match (Accession Number) | Query coverage (%) | Percent identity (%) |
---|---|---|---|
G. amphibium CR1 | Geitlerinema amphibium I013-0021 (KY550458) | 82 | 99.39 |
Anagnostidinema amphibium NRERC-450 (MN179486) | 98 | 99.13 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 98 | 99.13 | |
Limnothrix sp. B15 (GQ848190) | 98 | 99.13 | |
G. amphibium CR2 | Geitlerinema amphibium I013-0021 (KY550458) | 83 | 99.74 |
Pseudanabaena westiana NRERC-303 (MN145866) | 99 | 99.56 | |
Limnothrix sp. B15 (GQ848190) | 100 | 99.56 | |
Anagnostidinema amphibium NRERC-451 (MN179485) | 100 | 99.49 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 96 | 97.59 | |
G. amphibium CR3 | Geitlerinema amphibium I013-0021 (KY550458) | 85 | 99.91 |
Anagnostidinema amphibium NRERC-450 (MN179486) | 100 | 99.70 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 100 | 99.70 | |
Limnothrix sp. B15 (GQ848190) | 100 | 99.70 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 97 | 97.71 | |
G. amphibium CR4 | Geitlerinema amphibium I013-0021 (KY550458) | 85 | 99.91 |
Limnothrix sp. B15 (GQ848190) | 100 | 99.85 | |
Anagnostidinema amphibium NRERC-450 (MN179486) | 100 | 99.70 | |
Pseudanabaena westiana NRERC-303 (MN145866) | 100 | 99.70 | |
Jaaginema sp. TAU-MAC 0110 (MN062656) | 98 | 97.73 | |
L. nigra CR5 | Phormidium cf. irriguum CCALA 759 (FN813343) | 99 | 99.85 |
Oscillatoria sp. UIC 10045 (KF444211) | 93 | 99.35 | |
Lyngbya martensiana H3b/33 (JN854141) | 95 | 97.78 | |
L. stagnina CR6 | Phormidium cf. irriguum CCALA 759 (FN813343) | 97 | 99.85 |
Oscillatoria sp. UIC 10045 (KF444211) | 90 | 99.28 | |
Lyngbya martensiana H3b/33 (JN854141) | 92 | 97.73 | |
L. cincinnata CR7 | Phormidium cf. irriguum CCALA 759 (FN813343) | 97 | 99.63 |
Oscillatoria sp. UIC 10045 (KF444211) | 91 | 99.04 | |
Lyngbya martensiana H3b/33 (JN854141) | 93 | 97.50 | |
Microcoleus sp. CR8 | Microcoleus sp. HTT-U-KK5 (EF654070) | 99 | 99.40 |
P. rosea CR9 | Pseudanabaena limnetica Lim1 (LC434121) | 100 | 99.27 |
Limnothrix redekei CCAP 1459/29 (HE974998) | 100 | 99.05 | |
Arthronema gygaxiana UTCC 393 (AF218370) | 100 | 98.39 | |
Aphanothece sp. CR10 | Synechococcus sp. CACIAM 66 (MG272380) | 100 | 99.11 |
Cyanobium sp. JJM10D4 (AM710359) | 100 | 98.96 | |
Aphanothece minutissima 2LT34S03 (FM177488) | 100 | 97.41 | |
Microcystis elabens (AB001724) | 100 | 97.26 | |
Aphanothece sp. 4SS (MH341432) | 86 | 97.79 | |
Aphanothce sp. CR11 | Synechococcus sp. CENA108 (EF088334) | 100 | 98.96 |
Cyanobium sp. JJ22K (AM710364) | 100 | 98.30 | |
Cyanobacterium DC-1 (JF966674) | 100 | 98.30 | |
Cyanodictyon sp. JJCD (AM710382) | 100 | 98.22 | |
Aphanocapsa salina SAG 33.79 (KM020007) | 100 | 98.07 | |
Aphanothece sp. 4SS (MH341432) | 87 | 97.89 | |
Microcystis sp. CR12 | Synechococcus sp. CENA108 (EF088334) | 100 | 98.08 |
Cyanobium sp. JJM10D5 (AM710380) | 100 | 98.00 | |
M. flos-aquae CR13 | Microcystis flos-aquae CHAB541 (KJ818189) | 100 | 99.77 |
Sphaerocavum brasiliense CCIBt3094 (KY460548) | 100 | 99.32 | |
Synechocystis sp. SAG 45.90 (KM019995) | 100 | 99.47 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
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