3.1. Haemosporidian infections based on the microscopical and molecular analyses
Overall, the most frequently captured bird species was the Eurasian blackcap,
Sylvia atricapilla (60/346; 17.3 %). However, of the birds captured in natural habitats, the most frequently captured species was the European robin
Erithacus rubeculla (42/121; 34.71%), and of the birds captured in urbanized habitats the great tit
Parus major (37/225; 16.44%), (
Figure 2).
The presence of haemosporidian parasites on the blood smears was detected in 52/302 individuals (17.22%). The most abundant species was
H.
parabelopolskyi on blood smears of 21 birds (
Figure 3a), which is a host specific primarily to the black cap
Sylvia atricapilla, and it was detected in birds from both habitat types. The second most abundant species was
H.
attenuatus(
Figure 3b), which was detected on blood smears of 13 bird samples obtained from only one host species, the European robin
E. rubeculla, and only in birds from the natural habitats. No haemosporidians were identified in 18 bird samples.
Plasmodium meronts were detected on blood smears of five birds.
Leucocytozoon was detected only on blood smears of 2 individuals.
Parasite DNA by nested PCR was detected in 125/317 individuals (39.43%; CI 32.8-47.0%) of 18 bird species. Parasites of the genera
Haemoproteus and
Plasmodium were present in 96 individuals (30.28 %; CI 25.2-35.3 %), and parasites of the genus
Leucocytozoon were present in 29 individuals (9.15 %; CI 6.0-12.3%),
Table 1. Thirteen birds (4.10 %; CI 1.9-6.3%) were co-infected,
Table 1.
The infection rate of the genera Haemoproteus and Plasmodium in the birds caught in natural habitats was found to be 43.80% (53/121; CI 34.8-53.1%). The overall infection rate of the birds from urbanized habitats was in totally 21.94% (43/196; CI 16.4-28.4%), and in spring 10.67% (8/75; CI 4.7-19.9%). The prevalence of the Haemoproteus/ Plasmodium species in the birds in natural habitats was significantly higher than that of the birds in urbanized habitats, in total and in spring (p < 0.05). Of the birds in natural habitats, 8.26% (10/121; CI: 4.0-14.7%) were infected with Leucocytozoon; in total 9.69% (19/196; CI: 5.9-14.7%), in spring 8.00% (6/75; CI 3.0-16.6%) of the birds in urbanized habitats were infected with Leucocytozoon. There was no statistically significant difference in overall infection rates for Leucocytozoon neither overall nor in the spring (p > 0.05). Co-infections were found in total 3.57% (7/196; CI 1.5-7.2%), in spring in 1.33% (1/75; CI 0.0-7.2%) of the birds in urbanized habitats and in 4.96% (6/121; CI 1.8-10.5%) of the birds in natural habitats, and there was no statistically significant difference between the two groups (p > 0.05).
All 125 positive samples (PCR products of expected size) were sequenced. After comparing the obtained 81 sequences with known sequences in the GenBank and MalAvi databases, we identified twelve species:
H. attenuatus,
H. concavocentralis,
H. majoris,
H. minutus,
H. pallidus,
H. parabelopolskyi,
H. noctues, H. tartakovskyi, P. circumflexum,
P. relictum,
P.
vaughani, and
P. matutinum. Sequences from 16 individuals were unusable, and 2 samples showed double peaks, indicating co-infections (
Table S1).
Birds from the urbanized habitats were infected with six
Haemoproteus spp./
Plasmodium spp. (evaluated by nested PCR based on
cyt b), and birds from the natural habitat were infected with nine
Haemoproteus spp./
Plasmodium spp. The most abundant parasite species in the birds from the urbanized habitats were
H. majoris CWT4 lineage (100%, 1/1) recorded in
S. communis, P.
vaughani SYAT05 in 6/9 (66.67%)
T. merula followed by
H.
parabelopolskyi SYAT01, SYAT02, SYAT07, SYAT10 lineages
, with a prevalence of 39.29% in
S. atricapilla,
P. circumflexum SYABOR02 lineage (21.74%) in
E. schoeniculus,
P.
relictum SGS1 lineage (10.00%) in
P. major, P. montanus, C. caeruleus, S. atricapilla, and
P. matutinum LINN1 lineage (8.82%) in
T. merula, E. rubecula and
E. schoeniculus birds. . In the birds from the natural habitats,
H.
parabelopolskyi SYAT01, SYAT02 lineages infections were also the most prevalent (40.63%) in
S. atricapilla, followed by
H. attenuatus ROBIN1/LULU1 lineage (15.91%) in
E. rubecula, C. carduelis, E. schoeniculus, S. atricapilla and
T. philomelos birds,
P.
relictum SGS1, DP, COLL1 lineages (8.16%) in
E. cia, E. rubecula, P. montanus, F. coelebs,
P.
circumflexum TURDUS1 lineage (6.52%) in
E. rubecula and
E. citronella,
H. pallidus SYAT03 lineage (3.77%) in
E. rubecula, C. carduelis and
H. noctue CIRCUM01 (2.38%) in
E. rubecula. H.
concavocentralis HAWF2 lineage was recorded in 1/3 (33.33%)
C.
coccothraustes, H. tartakovskyi HAWF1 lineage also in 1/3
C.
coccothraustes (33.33%),
H.
minutus TURDUS2 lineage in 1/4 (25%)
T. merula, P.
vaughaini SYAT05 lineage in 2/4 (50%)
T. merula, and
P.
matutinum LINN1 lineage in 1/4 (25%)
T. merula.
Haemoproteus parabelopolskyi was detected in birds from both habitat types but only in one host Eurasian blackcap
S. atricapilla. Interestingly, we found this parasite in the blood of a seven-year-old female, which was confirmed by ringing data from 2006. Otherwise,
H. attenuatus ROBIN1/LULU1 lineage was present in a wide range of hosts (five species), though only in birds captured in the natural habitats (
Table S1). No unique lineages were recorded.
Birds with long-distance migration were infected with H. parabelopolskyi SYAT01, SYAT02, SYAT07 and SYAT10 lineages, H. majoris CWT4 lineage, H. attenuatus ROBIN1/LULU1 lineage, Haemoproteus sp. LWT1 lineage, P. relictum SGS1 lineage, and Leucocytozoon sp. PARUS4 lineage. In birds with short-distance migration and nonmigratory birds was identify the presence of H. attenuatus ROBIN1/LULU1 lineage, H. concavocentralis HAWF2 lineage, H. minutus TURDUS2 lineage, H. pallidus SYAT03 lineage, H. noctue CIRCUM01, H. tartakovskyi HAWF1 lineage, Haemoproteus sp. CCF1, CCF2, CCF6, EMCIR01 lineages, P. relictum SGS1, COLL1 lineages, P. vaughani SYAT05 lineage, P. matutinum LINN1 lineage, Plasmodium circumflexum TURDUS1, BT7, SYBOR02 lineages, and Leucocytozoon sp. PARUS4, PARUS18, PARUS19, PARUS28, PARUS50, STUR1/TURPEL01, PRUMOD01, BT2, BT5, SFC8, SYCON06 and SCORUS01 lineages.
Parasite intensity using qPCR analysis was verified with 52 microscopically positive samples. The intensity varied from 1 to 15,000 DNA copies per 100 avian red blood cells in both types of habitats. Low parasitemia (1-10 parasites per 10,000 erythrocytes) estimated from blood smears by microscopy corresponded on average to 1-1,000 DNA copies per 100 avian red blood cells. Low parasitemia was recorded in E. rubecula, S. atricapilla, T. merula, S. curruca, F. coelebs, P. major bird species infected with H. parabelopolskyi SYAT01, SYAT02, SYAT05, SYAT10 lineages, H. attenuatus ROBIN1/LULU1 lineage, P. relictum COLL1 lineage and Haemoproteus sp. CCF1 lineage. Medium parasitemia (11-100 parasites per 10,000 erythrocytes) estimated from blood smears by microscopy corresponded on average to 1,000-10,000 DNA copies per 100 avian red blood cells. Medium parasitemia was identified in E. rubecula birds infected with H. attenuatus ROBIN1/LULU1 lineage and in S. atricapilla infected with H. parabelopolskyi SYAT01, SYAT02 lineages. And, the high parasitemia (more than 100 parasites per 10,000 erythrocytes) estimated from blood smears by microscopy corresponded on average more than 10,000 DNA copies per 100 avian red blood cells. The high parasitemia was found in E. rubecula birds infected with H. attenuatus ROBIN1/LULU1 lineage and in T. merula P. matutinum LINN1 lineage
Co-infection with more haemosporidian genera was detected in 4.10% of the individuals (13/317; CI 1.9-6.3%). Co-infections with
Haemoproteus and
Leucocytozoon parasites were detected in five birds, and co-infections with
Plasmodium and
Leucocytozoon were detected in eight individuals, by microscopy and molecular biology (
Table 2). Co-infections with
Haemoproteus and
Plasmodium were not analyzed in detail in this study.