2. Systemic analysis of secondary metabolites and biological activity of the extracts and compounds from nudibranchs
The review was conducted as a systematic review using including several databases such as Elsevier, web of science, ACS publications, Taylor and Francis, Wiley Online Library, MDPI, Springer and the Marine Pharmacology website to assess a sample of studies on chemical and biological activity of extracts or isolated substances from nudibranchs. Keywords used were “nudibranch * OR opisthobranch * OR “sea slug” AND “biological activit *” OR chemi * OR “secondary metaboli *” OR “defensive metaboli *” OR compound *” in the ‘‘Topic’’ search field. The search was completed in September of 2023, the timespan was for all years. Non-related publications were excluded by title, abstract or a careful reading of all text if necessary. To include a study in our survey, it had to: i) be conducted with primary data; ii) be done with nudibranchia; iii) carry out chemical characterization and/or biological activity investigation. Unavailable publications were searched for using the Google Scholar database and, if still missing, were requested from the authors. The inclusion and exclusion criteria were established in the final worksheet with subsequent calibration of the authors, where each author screened the first 10 articles, compared their worksheets and made the adjustments to standardize the selection of articles and the information extraction by the authors. After that, the total number of articles was distributed among the authors to extract the information.
The information extracted was regarding to i) bibliographic information: publication year, journal; ii) biological information: family, species, location; iii) chemical characterization: preservation, extraction, solvent, purification, identification technique, class of primary and / or secondary metabolites, isolated substances; iv) biological activity: type of tested biological activity, cells, result (IC50). The results are based on the total sample of studies provided by the ISI Web of Science database that matched our inclusion criteria. We conducted multiple counts per paper when needed (e.g. some studies have conducted more than one biological activity tests, chemical characterization method or was done with more than one species).
The availability of digitized articles has increased mainly since the 1990s, which indicates that this result may be reflecting an availability bias. The analysis of the cumulative number of articles on the subject revealed that publications growth is a function of time (1980 to 2013). Most papers were published in the Journal of Natural Products (20%) followed by Tetrahedron (12%) and Tetrahedron Letters (9%), but these journals published a huge spectrum of studies (chemical characterization, biological activity, biosynthesis an others). Regarding the focus of the studies, it is noted that most of the studies performed chemical characterization (75,7%; n = 2132) compared to biological activity (24,3%; n = 686). The analysis encompassed 96 species distributed among 21 families, with the three most extensively studied species being Armina babai (n = 150), Doriprismatica atromarginata (n = 146), and Phyllidiella pustulosa (n = 140).
Different methods of preservation were identified being freezing the most frequent about 62.6% of the articles, followed by sea water (15.9%) and ethanol (7.9%). The analyzes also concluded that four extraction methods were used, and the main techniques were maceration (49.8%), followed by ultrasound (46.3%). Acetone, methanol and ethanol were the most used solvent. Were identified 48 journal that published chemical and biological studies as described in the
Table 1.
Among separation and purification techniques, the most frequently used was silica gel column chromatography (46.7%), followed by high-performance liquid chromatography (HPLC) (38.2%) and flash column chromatography (12.3%). From these techniques, eight metabolites were found, most of them terpenes in 78.5% of the articles, alkaloids in 8.1% and polyketides aromatics in 4.7%. Regarding biological activity, cytotoxicity (43.6%), antimycobacterial (43.6%), and ichthyotoxicity (9.8%) were the most evaluated. We also analyzed the frequency of positive results for biological activity by family using the extracts and isolated compounds. Most positive results were antimycobacterial, cytotoxicity and ichthyotoxicity biological activities. For these, Arminidae accounted for 99.2% of antimycobacterial positive results. For cytotoxicity Chromodorididae accounted for 42.5%, followed by Discodorididae with 28.3%, Phyllidiidae with 15.0% and Dorididae with 14.2%. When analyzing ichthyotoxicity, Polyceridae was the most promising family, accounting for 43.5% of positive results, followed by PhOf the Pyllidiidae with 28.3%, Chromodorididae with 21.7% and a last, Discodorididae with 6.5% (
Figure 1).
Analyzing toxicity results by metabolite class, terpenes were the most frequently evaluated (n = 139), but positive results accounted for 59.0%, we believe that the high presence of these compounds in nudibranch show these results. Alkaloids emerged as the second most prevalent metabolite, with 79 assays conducted, of which 65.8% yielded positive results. Considering metabolites with more than 20 assays, polyketides showed the most promising result, with 78.6% of positive results, but with only 28 assays.
The interest in nudibranch research has greatly increased over the last three decades, and this increase has been higher than the scientific increase in pharmacology studies. It is plausible that this increase comes along with the attention to marine organisms in general. In comparison, terrestrial plants, for example, have a much longer history of research and therefore, there are comparatively less gaps to be filled. In addition, advances in techniques and equipment to underwater research facilitated the exploration of marine environments and organisms. Biologically, marine organisms exhibit a far greater diversity than their terrestrial counterparts, a characteristic that often translates into the discovery of more unique and distinct compounds.
Research on the biological activity of nudibranchs has predominantly focused on cytotoxicity and antimycobacterial assays, both of which have yielded promising results. While other assays have received limited research attention, they generally exhibit a higher proportion of positive results for biological activity, suggesting potential areas for further investigation. Among the seven types of assays with three or fewer studies, six have demonstrated promising outcomes. Particularly noteworthy is the antiplasmodial activity, as all three studies conducted in this area have reported positive results.
By categorizing the results of biological activity based on taxonomic groups at the family level, we can assess whether species from different families possess varying potential for biological activity. With the results found, two aspects should be highlighted: first, nudibranch species of the families Arminidae and Discodorididae have great potential to show positive biological activity results. Both groups are widely distributed over the world’s oceans. Secondly, the Cadinidae family constitutes an important gap to be filled as all ten studies found showed positive results for biological activity. Although there are fewer species in this family (c.a. 50), it is also globally distributed. The Polyceridae family, on the other hand, had more than 50 assays while 55,8% didn’t show positive results. The information provided by this analysis can aid researchers to direct efforts and resources to the most promising groups.
The lack of studies focusing on species in the Atlantic Ocean indicates a potential bias in our knowledge. The limited number of studies conducted in South America and Africa aligns with the overall pattern of scientific research in various fields, but the knowledge gap in North America is distinct [
14]. Rectifying this geographical bias could aid in the discovery of new chemical compounds, even within the same species studied elsewhere.
The type of biological activity tested is not equally distributed across species and families. Nearly all antimycobacterial assays were done with Arminidae species. This bias can have a profound effect on results interpretation. On the other hand, the one publication tested 18 different bacteria and fungi [
15]. This bias is not seen for other activities. Cytotoxicity assays, for example, were more evenly distributed across nudibranch families, therefore showing a wider range of species with toxic substances.
Methods of preservation are intended to retard biological action, to prevent chemical degradation of secondary metabolites and to reduce volatility of constituents. Methods of preservation are limited to amber or opaque bottles, pH control, filtration, chemical addition, refrigeration, and freezing. Samples should in general be preserved by more than one method: one optimal for morphological study of the taxon, the other optimal for genetic study [
16]. Each preservation method has pros and cons, depending on what you need from the specimen.
Freezing is the easiest, most convenient, and least time-consuming method of preserving nudibranchs, as reported in more than 60% of the articles presented in this review. This technique could provide a safe haven for the broad range genetic material. The sampling and subsequent treatment to store the marines for metabolomic analyses can be performed in different ways, but the most used being freezing (directly upon collection or later), that is effective for DNA preservation, susceptible to power failures.
In recent years the techniques of extraction are developing rapidly and various media have been researched and improved; however, low yield and high cost are still a limiting factor. Extracts are reported to contain complex mixtures composed mainly of polysaccharides, proteins, polyphenols, and to extract metabolites without causing degradation, modern techniques, such as Microwave Assisted Extraction (MAE), Ultrasound-Assisted Extraction (UAE) and Supercritical Fluid Extraction (SFE) have advantages over traditional techniques [
17].
The findings concerning the chemistry and chemical ecology of nudibranchs were organized in a secondary metabolites and biological activities. In this paper's discussion, the species are referenced and ordered according to the names used in the original publications, but it is important to note that a taxonomic revision being conducted.
4. Biological /pharmacological activities of Secondary metabolites isolated from nudibranchs
From the emergence of public health threats, the increase in the incidence of serious and untreatable diseases, there is a continuous scientific effort to gain access to natural products with novel structures. However, screening programs show that if secondary metabolites are explored using approaches already in use and using easily accessible samples, such as plants, compounds are often rediscovered. In recent years, therefore, research efforts have focused on little-explored sources, such as the microbiomes of marine animals [
75].
During the first decade of the 21st century, no less than 550-700 new compounds were reported from marine invertebrates, half of which were isolated from marine sponges, and around 15% of which were chemically identified during this period. To date, around 30,000-40,000 marine natural products (MNPs) have been identified, with most compounds showing cytotoxic and anticancer properties [
76].
Nudibranchs are more than 6000 species of soft-bodied marine mollusks that use secondary metabolites for their chemical defense. The diversity of these metabolites and the responsibility of symbiotic microbes for the synthesis of these molecules are still being studied and have attracted the attention of natural product researchers due to the potential for discovery of bioactive metabolites, in conjunction with the interesting predator-prey chemical ecological interactions that are present. Toxic or unpalatable compounds derived from dietary sources or produced
de novo are used by many taxa to reduce the risk of predation from nudibranchs mollusks, including alkaloids, diterpenes, and sesquiterpenes [
13].
Nudibranchs have a great diversity, with terpenes being the however, there are many nudibranchs that have not yet been studied, and some of recent studies presented the chemical composition of terpene extracts from nudibranchs belonging to the genera
Chromodoris and
Hypselodoris [
77].
Nudibranchs of the genus
Chromodoris are the largest of the nudibranchs and are generally found in tropical coral reefs and subtropical coastal waters. They are brightly colored, with the aim of attracting predators, but the presence of color in the nudibranch is an indication of the existence of chemical substances that react when attacked. Previous studies have indicated that
Chromodoris are trophic, i.e., by feeding on sponges, they accumulate bioactive metabolites, derived from terpenoids, making them a promising target for new research aimed at developing potential drugs [
78].
The Chromodorididae typically possess terpene metabolites that have potent bioactive properties, including cytotoxic, antitumor, feeding-deterrent, antibacterial and antifungal effects [
79]. For example, Chromodorolide A (
140) is reported to show activity against free-living larval stages of the parasitic nematodes
Haemonchus contortus and Trichostrongylus colubriformis, in addition to cytotoxicity and antimicrobial effects [
79,
80].
The nudibranchs of the genus
Hypselodoris are the brightest coloured nudibranchs and are often characterized by the presence of sesquiterpene metabolites containing a furan. Additionally, some species within this genus have also been reported to produce diterpenoids, as well as sesterpenoids [
59]. Mudianta et al. reported that some terpenes, such as
76 and
83, isolated from
Hypselodoris obscura and
H. whitei, are suggested to be used as feeding deterrents against predators [
77].
Okino et al. [
81] suggested that sesquiterpenes present in the mucus may serve as antifouling agents to keep exposed surfaces free of epibionts, and that
Phyllidia compounds also utilize a dense layer of calcareous spicules arranged on the mantle and foot, which provide structural support and make them difficult to eat, acting as a defense mechanism. The most detected secondary metabolites in the three analyzed
Phyllidia genera are sponge-derived sesquiterpene isonitrile and related compounds, which agrees with chemical investigations prior to the Papu et al. [
82] and a common feature of all chemically analyzed
Phyllidia species is the presence of brominated natural products that have moderate polarity.
Wu et al. [
43] realized a detailed chemical investigation of the collected two nudibranchs,
P. pustulosa and P. coelestis and
in a bioassay, the bisabolane-type sesquiterpenoids
38 and
40 exhibited cytotoxicity against several human cancer cell lines (A549, HT-29, SNU-398, and Capan-1). The cytotoxic activity of all these compounds was assessed against human cancer cell lines SNU-398 with IC
50 values of 2.15, and 0.50 µM, respectively, demonstrating promising results. In addition, compound
38 also displayed broad cytotoxicity against the other three cancer cell lines, including A549, HT-29 and Capan-1, with IC
50 values of 8.6, 3.35 and 1.98 µM, respectively.
A nudibranch that has attracted significant interest is
Cadlina luteomarginata, as it is one of only two species of nudibranchs known to both sequester prey metabolites and biosynthesis its own natural products. To date, metabolites with 22 carbon skeletons, representing monoterpenes, sesquiterpenes, diterpenes, and degraded sesterterpenoids and diterpenoids have been isolated from
C. luteomarginata. Their ecological roles are not well defined but have been shown to be moderately activating towards cellular processes that use the cyclic adenosine monophosphate (cAMP) signal pathway [
66,
72].
Three new isocyanoditerpenes (
54−56) have been characterized from White et al. [
46], and the major isocyanide
56 and synthetic diastereomers showed activity against
Plasmodium falciparum malaria parasites at in vitro growth inhibition assay (IC
50 ∼1 μM) [
83]. Detailed investigation of the Antarctic nudibranch
Austrodoris kerguelenensis revealed that palmadorins (
103-106 and
115-117) inhibit human erythroleukemia (HEL) cells with low micromolar IC50’s, and
115 inhibits Jak2, STAT5, and Erk1/2 activation in HEL cells and causes apoptosis, at 5 mM. [
63,
64].
A trophic relationship between the nudibranch
H. sanguineus and
Chelonaplysilla sp. was suggested by Shen et al. [
84] and a plausible biogenetic relationship between the diterpenoids isolated was proposed, along with the chemo-ecological implications of their co-occurrence in the two organisms investigated. In in vitro bioassays, echinoclerodane A exhibited a potent inhibitory effect (IC
50=2.81 μM) on LPS-induced inflammatory response in RAW 264.7 macrophage cells and echinoclerodane A and oculatolide showed considerable antibacterial activities with MIC values ranging from 1.0 to 8.0 μg/mL.
Mollo et al. [
85] has found toxic compounds with significant activity as feeding deterrents both in the cephalaspidean
Haminoea cyanomarginata and in the nudibranch
Melibe viridis.
M. viridis mucous secretion procure ichthyotoxic prostaglandin
E2-1,15-lactone (
141) previously isolated from the Mediterranean
Tethys fimbria in 1989. Stable isotope feeding studies using [1,2-
13C2]-sodium acetate have shown that 2,6-dimethyl-5-heptenal, a putative defensive allomone, is produced by the Dendronotid nudibranch
Melibe leonina via
de novo biosynthesis [
67]. This study is the first to show that a dendronotid nudibranch is capable of
de novo terpene biosynthesis. The production of ichthyotoxic prostaglandin lactones through
de novo biosynthesis has been reported in a dendronotid nudibranch, specifically
T. fimbria. This finding represents the only other documented case of such biosynthesis in this nudibranch family, where these compounds are derived from fatty acid biosynthesis.
Ramya et al [
15] evaluated biological properties of
Armina babai in different extract (acetone, butanol, ethanol, hexane and methanol). Most potent extracts were purified, and the obtained results indicated the presence of potent antimicrobial compounds in sea slug. In the investigation, solvent extract of
A. babai muscles samples evaluated against 10 different pathogenic bacteria (
E.coli,
K. oxytoca, K. pneumoniae, P. mirabilis, Pseudomonas sp., P. aeruginosa, S. paratyphi, S. typhi, S. aureus, V. cholerae, A. alternate, A. flavus, A. niger, C. albicans, C. tropicalis, E. floccosum, Mucor sp., Pencillium sp., Rhizopus sp., T. rubrum) and multi drug resistant bacterial strains and the positive active muscle extract was further subjected to TLC studies. All the solvent extracts of
A. babai were insensitive against all the fungal strains used and it was evident that the results of primary screening, crude butanol extracts, appeared to be quite promising for their ability to inhibit the selected pathogenic bacteria.