ERK operates downstream of growth factors that play a role in development such as FGF (fibroblast growth factor), NGF (nerve growth factor), and many others [
33,
34]. Mouse models bearing conditional null alleles of ERK1 and ERK2 (Mapk3 and Mapk1) display craniofacial and cardiovascular defects. For the most part, the affected tissues involved derivatives of the neural crest, which constitutes a population of cells specified shortly after gastrulation. These neural crest cells give rise to multiple tissues including bones, connective tissue, melanocytes, and various nerves [
35,
36,
37]. In PC-12 cells, which originate from the neural crest, NGF treatment induces differentiation, and as discussed above this requires sustained ERK activation and nuclear localization of ERK [
2]. The ERK nuclear interactome in NGF-treated cells provided insights into how ERK regulates differentiation. Two critical targets are ERF, a suppressor of ETS transcription factor activity, and TRPS1, a suppressor of GATA transcription factors. Nuclear ERK phosphorylates ERF and TRPS1 inhibiting their activity and allowing both ETS- and GATA-mediated gene expression [
2]. The data suggest that the regulation of cell differentiation by ERK depends on the integration of both duration and subcellular localization of ERK signaling. This integration provides more opportunities for regulation. Additional TFs regulating cell differentiation downstream of ERK in the PC-12 cell system were identified by studying the transcriptome after stimulation with either EGF or NFG. Short-term EGF stimulation-activated genes are regulated by E2F1, EBF1, SOX9, and SP1, while late-acting NGF-activated genes are regulated by BACH2, AP1, ETV4, and ELF2 [
38]. The factors regulating the exchange of transcription factors between early and late time points are unknown. Late-acting TFs include IEG stimulated during the initial wave of gene expression, as well as TFs induced by autocrine stimulation via secreted factors such as the urokinase-type plasminogen activator (uPA) and matrix metalloproteinases (MMPs) [
38]. It is tempting to speculate that fates controlled by sustained ERK activity depend on TF that do not contain inhibitory phosphorylation sites but only low-affinity, positively acting phosphorylation sites. In contrast, the proliferation fate will depend on factors such as ELK-1 (
Figure 3) containing both early-acting positive phosphorylation sites and late-acting negative phosphorylation sites (
Figure 3).
The duration of ERK activity was also important to determine neurogenic endoderm (transient, 30 min) or gut ectoderm (sustained, 1h-+) in flies. The role of signaling duration was demonstrated in this study by using optogenetics [
39]. Interestingly, the mechanism specifying the gut ectoderm depended on cumulative ERK signaling implying a memory of ERK activity across multiple cellular divisions [
39] (
Figure 5).