2.1.1. Synthetic procedures for intermediates 4, 5, 8 and 12.
Synthesis of (2-aminophenyl)(thiomorpholino)methanone (4):
To a solution of aminoacid 1 (0.500 g, 3.65 mmol, 1.1 eq.) in 25 mL dry DCM were added at r.t. consequently DIPEA (1.21 mL, 7.29 mmol, 2.2 eq.), thiomorpholine 2 (0.33 mL, 3.31 mmol, 1.0 eq.) and TBTU (1.170 g, 3.65 mmol, 1.1 eq.). The formed clear solution was stirred at r.t. for 24 h. Workup: reaction mixture was diluted with 40 mL DCM and consequently washed with aq. K2CO3 (x1) and water (x2). TLC – DCM:MTBE=5:1, x2. Organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified employing column chromatography: 40 g silica, mobile phase DCM:MTBE=10:1, furnishing0.700 g (96%) of compound 4 as pale yellow solid. 1H NMR (600 MHz, CDCl3) δ 7.17 (m, 1H), 7.05 (dd, J = 7.8, 1.6 Hz, 1H), 6.70-6.74 (m, 2H), 3.86 (br s, 4H), 2.66 3.86 (br s, 4H). 13C NMR (151 MHz, CDCl3) δ 170.32 (1C, C=O), 145.40, 130.70, 127.48, 119.73, 117.62, 116.80, 27.88.
Synthesis of 2-amino-N-(thiophen-2-ylmethyl)benzamide (5):
To a solution of aminoacid 1 (0.400 g, 2.92 mmol, 1.0 eq.) in 25 mL dry DCM were added at r.t. consequently DIPEA (1.21 mL, 7.29 mmol, 2.5 eq.), amine 3 (0.33 mL, 3.21 mmol, 1.1 eq.) and TBTU (1.030 g, 3.21 mmol, 1.1 eq.). The formed clear solution was stirred at r.t. for 24 h. Workup: reaction mixture was diluted with 40 mL DCM and washed consequently with aq. citric acid and water. TLC – DCM, x2. The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 40 g silica, mobile phase DCM, affording 0.580 g (86%) of compound 5 as a white solid. M.p. 111-112°C. 1H NMR (600 MHz, CDCl3) δ 7.30 (dd, J = 7.9, 1.4 Hz, 1H), 7.24 (dd, J = 5.1, 1.1 Hz, 1H), 7.20 (ddd, J = 8.5, 7.2, 1.5 Hz, 1H), 7.02 (m, 1H), 6.97 (dd, J = 5.1, 3.5 Hz, 1H), 6.68 (dd, J = 8.1, 0.9 Hz), 6.62 (ddd, J = 8.1, 7.3, 1.1 Hz, 1H), 6.40 (br s, 1H, CO-NH), 5.54 (br s, 2H, NH2), 4.76 (dd, J = 5.6, 0.6 Hz, 2H, CH2). 13C NMR (151 MHz, CDCl3) δ 168.93 (1C, C=O), 148.85, 140.94, 132.50, 127.16, 126.93, 126.08, 125.30, 117.32, 116.58, 115.48, 38.47 (1C, CH2).
Synthesis of N-(2-aminobenzyl)thiophene-2-sulfonamide (8):
Diamine 6 (0.304 g, 2.49 mmol, 1.0 eq.) was dissolved in 25 mL dry DCM and Et3N (0.42 mL, 2.99 mmol, 1.2 eq.) was added. The formed clear solution was cooled down to 5°C (with water-ice) and sulfochloride 7 (0.500 g, 2.74 mmol, 1.1 eq.) was added portionwise. The resulting clear reaction mixture was stirred for 30 min at 5°Cfollowed by 20 h at r.t. Workup: the reaction mixture was diluted with 40 mL DCM and consequently washed with aq. citric acid and water. TLC – DCM, x2. The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 40 g silica, mobile phase DCM:MTBE=20:1, to yield 0.670 g (99%) of compound 8 as white solid. M.p. 132-133°C. 1H NMR (600 MHz, CDCl3) δ 7.62-7.66 (m, 2H), 7.10-7.14 (m, 2H), 6.93 (dd, J = 7.4, 0.9 Hz, 1H), 6.64-6.69 (m, 2H), 4.70 (t, J = 5.7 Hz, 1H, SO2-NH), 4.10 (d, J = 6.2 Hz, 2H, CH2), 4.03 (br s, 2H, NH2). 13C NMR (151 MHz, CDCl3) δ 145.62, 139.93, 132.60, 132.31, 130.30, 129.88, 127.60, 119.16, 118.26, 116.28, 45.70 (1C, CH2).
Synthesis of N-(2-aminobenzyl)-5-(dimethylamino)naphthalene-1-sulfonamide (12):
To a solution of diamine 6 (0.400 g, 3.27 mmol, 1.0 eq.) in 25 mL dry DCM was added at r.t. Et3N (0.59 ml, 4.26 mmol, 1.3 eq.). The formed clear solution was cooled to 5°C (with water-ice) and dansyl chloride 9 (0.972 g, 3.60 mmol, 1.1 eq.) was added in portions. The formed clear yellow solution was stirred for 1 h at 5°C, followed by20 h at r.t. Workup: reaction mixture was diluted with 40 mL DCM and washed with water. TLC – DCM:MTBE=50:1, x2. The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 60 g silica; mobile phase DCM:MTBE=50:1, affording 1.170 g (99%) of compound 12 as bright yellow solid. 1H NMR (600 MHz, CDCl3) δ 8.56 (m, 1H), 8.29 (dd, J = 7.3, 1.2 Hz, 1H), 8.26 (m, 1H), 7.52-7.57 (m, 2H), 7.19 (br d, J = 7.5 Hz, 1H), 7.04 (dt, J = 7.7, 1.4 Hz, 1H), 6.78 (dd, J = 7.9, 1.4 Hz, 1H), 6.55-6.58 (m, 2H), 4.87 (t, J = 6.1 Hz, 1H, SO2NH), 3.93 (br s, 1H, NH2), 3.91 (d, J = 6.1 Hz, 2H, CH2), 2.90 (s, 6H, NMe2). 13C NMR (151 MHz, CDCl3) δ 152.11, 145.57, 133.78, 130.79, 130.26, 130.18, 129.84, 129.63, 129.54, 128.62, 123.28, 119.50, 118.30, 118.06, 116.12, 115.25, 45.47 (1C, CH2), 45.41 (2C, NMe2).
2.1.2. Synthetic procedures for target compounds L1-L6
Synthesis of 5-(dimethylamino)-N-(thiophen-2-ylmethyl)naphthalene-1 sulfonamide (L1):
To a solution of amine 3 (0.17 mL, 1.63 mmol, 1.1 eq.) in 20 mL dry DCM was added at r.t. DIPEA (0.31 mL, 1.78 mmol, 1.2 eq.). The formed clear solution was cooled down to 5°C (with water-ice) and dansyl chloride 9 (0.400 g, 1.48 mmol, 1.0 eq.) was added in portions. The resulting clear yellow solution was stirred for 1 h at 5°C, followed by24 h at r.t. Workup: reaction mixture was diluted with 40 mL DCM and consequently washed with aq. citric acid and water. TLC – DCM, x2. Organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 70 g silica; mobile phase DCM. After column purification, the product was washed with 3 mL of hot petroleum ether, cooled down to r.t., decanted and dried in vacuo to give 0.480 g (93%) of pure L1 as pale-yellow powder. M.p. 113-114°C. 1H NMR (600 MHz, CDCl3) δ 8.54 (dt, J = 8.5, 1.1 Hz, 1H), 8.26 (tt, J = 7.1, 1.1 Hz, 2H), 7.56 (dd, J = 8.6, 7.5 Hz, 1H), 7.52 (dd, J = 8.5, 7.2 Hz, 1H), 7.19 (dd, J = 7.6, 0.9 Hz, 1H), 7.09 (dd, J = 5.1, 1.2 Hz, 1H), 6.77 (dd, J = 5.1, 3.5 Hz, 1H), 6.72 (dt, J = 3.5, 1.0 Hz, 1H), 4.94 (t, J = 6.0 Hz, 1H), 4.28 (dd, J = 6.2, 0.9 Hz, 2H), 2.90 (s, 6H). 13C NMR (151 MHz, CDCl3) δ 152.02, 138.72, 134.37, 130.69, 129.87, 129.60, 128.52, 126.69, 126.47, 125.72, 123.15, 118.58, 115.19, 77.23, 77.02, 76.81 (Figures S1-1 to S1-18). ESI-MS: [M+H]+ for C17H19N2O2S2 = 347.0882 (-0.1 ppm). Calculated [M+H]+ for C17H19N2O2S2 = 347.088246.
Synthesis of 5-(dimethylamino)-N-(2-(thiomorpholine-4 carbonyl)phenyl)naphthalene-1-sulfonamide (L2):
To 10 mL dry pyridine was added intermediate 4 (0.700 g, 3.15 mmol, 1.0 eq.) and dansyl chloride 9 (1.020 g, 3.78 mmol, 1.2 eq.). The reaction mixture was gently refluxed at 115°C for 2 h (until exhaustion of 4). TLC – DCM:MTBE=50:1, x2. Workup: reaction mixture was diluted with 70 mL DCM and consequently washed with aq. citric acid (x2) and water (x2). The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 60 g silica; mobile phase DCM:MTBE=50:1. After purification by column the product was washed with 3 mL hot petroleum ether, cooled down to r.t., decanted and dried in vacuo to give 1.000 g (70%) of compound L2 as light-yellow powder. M.p. 176-177°C. 1H NMR (600 MHz, CDCl3) δ 8.68 (s, 1H), 8.50 (dt, J = 8.6, 1.1 Hz, 1H), 8.33 (dt, J = 8.6, 1.0 Hz, 1H), 8.13 (dd, J = 7.3, 1.3 Hz, 1H), 7.77 (dd, J = 8.4, 1.1 Hz, 1H), 7.63 (dd, J = 8.7, 7.5 Hz, 1H), 7.41 (dd, J = 8.5, 7.3 Hz, 1H), 7.34 (ddd, J = 8.6, 7.4, 1.6 Hz, 1H), 7.28 – 7.22 (m, 1H), 7.03 (td, J = 7.5, 1.2 Hz, 1H), 6.93 (dd, J = 7.7, 1.6 Hz, 1H), 3.50 (s, 2H), 2.88 (s, 6H), 2.69 (s, 2H), 2.46 (s, 2H), 2.02 (s, 2H).13C NMR (151 MHz, CDCl3) δ 168.58, 152.09, 136.08, 134.50, 131.04, 130.65, 130.09, 129.89, 129.23, 128.63, 127.16, 125.81, 124.27, 124.13, 123.18, 118.94, 115.71, 77.24, 77.03, 76.82, 45.49, 27.32 (Figures S2-1 to S2-13). ESI-MS: [M+H]+ for C23H26N3O3S2 = 456.1407 (-0.7 ppm). Calculated [M+H]+ for C23H26N3O3S2 = 456.141010.
Synthesis of 5-(dimethylamino)-N-(2-(methylthio)phenyl)naphthalene-1-sulfonamide (L3):
To 4 mL dry pyridine were added amine 10 (0.338 g, 2.43 mmol, 1.0 eq.) and dansyl chloride 9 (0.786 g, 2.91 mmol, 1.2 eq.). The reaction mixture was stirred at r.t for 48 h (until exhaustion of 10). TLC – DCM:PE=1:1, x2. Workup: the reaction mixture was diluted with 50 mL DCM and consequently washed with 2N HCl and water. The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 70 g silica; mobile phase DCM. After column product was washed with 3 mL hot petroleum ether, cooled down to room temperature, decanted and dried in vacuo affording 0.640 g (70%) of compound L3 as yellow powder. M.p. 101-102°C. 1H NMR (600 MHz, CDCl3) δ 8.50 (dt, J = 8.5, 1.1 Hz, 1H), 8.39 (dd, J = 8.7, 1.0 Hz, 1H), 8.29 (dd, J = 7.3, 1.3 Hz, 1H), 8.15 (s, 1H), 7.57 (dd, J = 8.7, 7.5 Hz, 1H), 7.51 – 7.44 (m, 2H), 7.32 (dd, J = 7.7, 1.6 Hz, 1H), 7.16 (dd, J = 7.6, 0.9 Hz, 1H), 6.93 (td, J = 7.6, 1.3 Hz, 1H), 2.84 (s, 6H), 2.03 (s, 3H). 13C NMR (151 MHz, CDCl3) δ 151.95, 137.89, 134.18, 134.10, 130.99, 130.39, 129.84, 129.47, 129.19, 128.55, 125.79, 124.35, 123.01, 118.69, 118.48, 115.27, 77.24, 77.02, 76.81, 45.38, 19.59 (Figures S3-1 to S3-12). ESI-MS: [M+H]+ for C19H21N2O2S2 = 373.1050 (3 ppm). Calculated [M+H]+ for C19H21N2O2S2 = 373.103896.
Synthesis of N-(2-((5-(dimethylamino)naphthalene)-1-sulfonamido)benzyl)thiophene-2-sulfonamide (L4):
To 10 mL dry pyridine were added intermediate 8 (0.300 g, 1.12 mmol, 1.0 eq.) and dansyl chloride 9 (0.362 g, 1.34 mmol, 1.2 eq.). The reaction mixture was gently refluxed at 115°C for 4 h (until exhaustion of 8). TLC – DCM:PE=1:1, x2. Workup: the reaction mixture was diluted with 70 mL DCM and consequently washed with aq. citric acid (x3) and water (x2). Organic phase was dried over anhydrous Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 70 g silica; mobile phase DCM:MTBE=100:1. After column chromatography, the product was washed with 3 mL hot petroleum ether, cooled down to r.t., decanted and dried in vacuo to give 0.560 g (99%) of compound L4 as yellow powder. M.p. 83-84°C. 1H NMR (600 MHz, CDCl3) δ 8.52 (dt, J = 8.5, 1.2 Hz, 1H), 8.31 (dd, J = 8.7, 1.0 Hz, 1H), 8.09 (dd, J = 7.3, 1.3 Hz, 1H), 7.63 (s, 1H), 7.62 (q, J = 1.4 Hz, 1H), 7.58 (dd, J = 8.7, 7.5 Hz, 1H), 7.43 (dd, J = 8.5, 7.3 Hz, 1H), 7.21 (s, 1H), 7.19 (dd, J = 7.7, 0.9 Hz, 1H), 7.17 (dd, J = 7.5, 1.7 Hz, 1H), 7.11 (dd, J = 4.9, 3.9 Hz, 1H), 7.04 (td, J = 7.5, 1.4 Hz, 1H), 6.99 (td, J = 7.7, 1.7 Hz, 1H), 6.72 (dd, J = 8.0, 1.4 Hz, 1H), 5.26 (t, J = 6.6 Hz, 1H), 4.07 (d, J = 6.6 Hz, 2H), 2.89 (s, 6H). 13C NMR (151 MHz, CDCl3) δ 152.07, 140.08, 134.79, 133.86, 132.59, 132.33, 131.00, 130.95, 130.72, 130.61, 129.70, 129.53, 129.17, 128.89, 127.61, 126.65, 124.69, 123.12, 118.50, 115.33, 77.23, 77.02, 76.81, 45.41, 44.27 (Figures S4-1 to S4-13). ESI-MS: [M+H]+ for C23H24N3O4S3= 502.0938 (2.9 ppm). Calculated [M+H]+ for C23H24N3O4S3 = 502.092346.
Synthesis of 5-(dimethylamino)-N-(2-(3-methylthioureido)benzyl)naphthalene-1-sulfonamide (L5):
A solution of 12 (0.410 g, 1.15 mmol, 1.0 eq.) and methyl isothiocyanate (0.168 g, 2.30 mmol, 2.0 eq.) in 10 mL dry MeOH was gently refluxed for 8 h (until exhaustion of 12). TLC – DCM:MTBE=20:1, x2. Workup: the solvent was evaporated to dryness and the rest was purified using column chromatography: 60 g silica; mobile phase DCM:MTBE=20:1. After the column purification, the product was washed with 3 mL hot petroleum ether, cooled down to room temperature, decanted and dried in vacuo furnishing 0.400 g (81%) of compound L5 as yellow powder. M.p. 99-100°C. 1H NMR (600 MHz, DMSO) δ 8.72 (s, 1H), 8.47 (dt, J = 8.5, 1.0 Hz, 1H), 8.36 (dt, J = 8.7, 0.9 Hz, 1H), 8.12 (dd, J = 7.3, 1.3 Hz, 1H), 7.95 (s, 1H), 7.58 (dd, J = 8.6, 7.4 Hz, 2H), 7.27 (dd, J = 7.5, 0.9 Hz, 2H), 7.19 (td, J = 7.6, 1.6 Hz, 1H), 7.12 (dd, J = 7.9, 1.4 Hz, 1H), 7.08 (td, J = 7.5, 1.4 Hz, 1H), 4.05 (s, 2H), 2.86 (d, J = 2.4 Hz, 9H). 13C NMR (151 MHz, DMSO) δ 182.37, 151.13, 135.94, 134.24, 128.98, 128.96, 128.88, 128.04, 127.76, 127.52, 127.34, 127.13, 125.85, 122.95, 118.79, 114.75, 44.63, 41.98, 30.70 (Figures S5-1 to S5-13). ESI-MS: [M+H]+ for C21H25N4O2S2= 429.1425 (2.7 ppm). Calculated [M+H]+ for C21H25N4O2S2= 429.141344.
Synthesis of 2-((5-(dimethylamino)naphthalene)-1-sulfonamido)-N-(thiophen-2-ylmethyl)benzamide (L6):
To 5 mL dry pyridine was added intermediate 5 (0.250 g, 1.08 mmol, 1.0 eq.) and dansyl chloride 9 (0.348 g, 1.29 mmol, 1.2 eq.). The reaction mixture was stirred at r.t for 48 h (until exhaustion of 5). TLC – DCM, x2. Workup: the reaction mixture was diluted with 70 mL DCM and consequently washed with 2N HCl (x1) and water (x2). The organic phase was dried over anhydr. Na2SO4 and evaporated in vacuo to dryness. The crude product was purified by column chromatography: 70 g silica; phase DCM:MTBE=100:1. After column product was washed with 3 ml hot PE, cooled, decanted, and dried in vacuo yielding 0.350 g (70%) of compound L6 as yellow powder. M.p. 210-211°C. 1H NMR (600 MHz, CDCl3) δ 11.18 (s, 1H), 8.48 (dt, J = 8.5, 1.2 Hz, 1H), 8.38 (d, J = 8.7 Hz, 1H), 8.26 (dd, J = 7.3, 1.3 Hz, 1H), 7.60 (dd, J = 8.4, 1.1 Hz, 1H), 7.55 (dd, J = 8.7, 7.6 Hz, 1H), 7.44 (dd, J = 8.5, 7.3 Hz, 1H), 7.29 (ddd, J = 8.6, 7.4, 1.5 Hz, 1H), 7.26 – 7.21 (m, 2H), 7.14 (d, J = 7.3 Hz, 1H), 6.96 (d, J = 3.4 Hz, 2H), 6.90 (td, J = 7.6, 1.1 Hz, 1H), 6.20 (t, J = 5.4 Hz, 1H), 4.55 (d, J = 5.5 Hz, 2H), 2.84 (s, 6H). 13C NMR (151 MHz, CDCl3) δ 167.89, 151.70, 139.60, 138.91, 134.63, 132.66, 130.69, 130.08, 129.76, 129.54, 128.37, 127.04, 126.63, 126.58, 125.63, 122.97, 122.83, 120.37, 119.94, 119.18, 115.25, 77.23, 77.02, 76.81, 45.41, 38.57 (Figures S6-1 to S6-16). ESI-MS: [M+H]+ for C24H24N3O3S2= 466.1253 (-0.1 ppm). Calculated [M+H]+ for C24H24N3O3S2 = 466.125360.