Submitted:
01 January 2024
Posted:
03 January 2024
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Abstract
Keywords:
1. Introduction
2. Current Challenges in Explainable AI and Computational Biology
2.1. Legal Implications
2.2. Ethical Implications
2.3. Societal Implications
2.4. Bridging the Gap with Computational Biology
3. The Importance of Interdisciplinary Collaboration
3.1. Case Studies and Examples
3.1.1. Human-in the loop (HITL) Approach
- Sezgin, E. emphasizes the importance of a HITL approach in healthcare AI, where AI systems are guided, communicated, and supervised by human expertise. This approach ensures safety and quality in healthcare services. Therefore, there is a need for multidisciplinary teams to explore and evaluate cost-effective and impactful collaborative AI solutions and establish HITL protocols.[41]
3.1.2. Interdisciplinary Research in Digital Health
- Krause-Jüttler, G. et. al produced a case study on two interdisciplinary research projects involving 20 researchers from medicine and engineering sciences working jointly on digital health solutions. The study identified factors at the individual, team, and organizational levels that influence the implementation of interdisciplinary research projects.[42]
3.1.3. Intelligent Tutoring System for Medical Students
- Bilgic, E. and Harley, JM. offer an example of successful interdisciplinary collaboration: an intelligent tutoring system designed to help medical students with their diagnostic reasoning skills through virtual patient cases. This project brought together individuals from different disciplines, demonstrating the potential of interdisciplinary teams to produce and deliver AI-enhanced education effectively.[43]
3.1.4. Quality Management Systems (QMS) in Healthcare AI
- The integration of QMS principles into the life cycle of AI technologies within healthcare settings can close the AI translation gap by establishing a robust framework that accelerates the safe, ethical, and effective delivery of AI in patient care. Implementing a QMS requires adaptability, customization, and interdisciplinary collaboration, fostering awareness, education, and organizational change.[44,45]
3.2. The Role of Academia, Industry, and Healthcare Professionals
3.2.1. Academia
3.2.2. Industry
3.2.3. Healthcare Professionals
4. The Role of Conferences in Fostering Collaboration and Innovation
5. Looking Forward: Future Directions and Innovations
5.1. Future Trends in Explainable AI
5.2. Future Innovations in Computational Biology
5.3. Healthcare 5.0 and Explainable AI
5.4. Balancing Explainability and Accuracy/Performance in Future AI Models
6. Conclusions
Author Contributions
Funding
Conflicts of Interest
References
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| Technology | Description |
|---|---|
| Next-Generation Sequencing (NGS) | NGS technologies have revolutionized genomics by facilitating rapid and cost-effective sequencing of nucleic acid sequences. This deluge of genomic data necessitates the application of sophisticated data science methodologies, including machine learning, to discern complex genetic patterns, predict gene functions, and infer biological pathways. |
| Microarrays | Microarrays enable simultaneous quantification of gene expression across thousands of genes or genotyping across genome-wide regions. The extensive datasets generated require robust statistical and computational techniques, such as cluster analysis and pattern recognition, for accurate interpretation, which are cornerstones of data science. |
| Proteomics | Advancements in high-throughput mass spectrometry for proteomic studies allow the comprehensive identification and quantification of proteins in complex biological matrices. Bioinformatics is integral to preprocessing the data, while data science facilitates the elucidation of protein-protein interactions and functional annotations via predictive modeling and systems biology approaches. |
| Drug Discovery | High-throughput screening in pharmacological research tests numerous compounds for biological activity, generating substantial datasets. Data science approaches, particularly predictive algorithms, are integral for analyzing these datasets, identifying active compounds, discerning patterns, and guiding the optimization of lead candidates, merging bioinformatics with cheminformatics. |
| Single-Cell Analysis | Single-cell sequencing technologies provide detailed profiles of individual cells, yielding insights into cellular heterogeneity. Bioinformatics methods are employed for data management and preprocessing, whereas data science techniques, including unsupervised learning and network inference, are crucial for characterizing cell types, states, and lineage hierarchies. |
| Best Practice | Description |
|---|---|
| Embrace Interdisciplinary Learning | Actively seek knowledge in a new field to enrich research perspectives and methodology within the bioinformatics context.[48] |
| Acclimate to Varied Terminologies | Comprehend and respect the terminological diversity across disciplines to facilitate effective communication and collaboration.[49] |
| Institutionalize Communication Channels | Establish routine interdisciplinary dialogues through workshops and joint academic initiatives to enhance scientific exchange.[50] |
| Support Early-Career Researchers | Provide mentorship to navigate interdisciplinary expectations and promote career development within the bioinformatics domain.[51] |
| Acknowledge and Resolve Dysfunctional Dynamics | Promptly recognize and rectify non-productive collaborative efforts to maintain project momentum.[52] |
| Champion Reproducible Bioinformatics Research | Implement guidelines for computational reproducibility and robust data management to underpin project design integrity.[53,54,55,56] |
| Clarify Roles in Interdisciplinary Teams | Define and assign specific responsibilities to streamline contributions and accountability in collaborative projects.[57,58] |
| Strategize Data Management | Develop comprehensive data stewardship plans to ensure the longevity and accessibility of bioinformatics data.[59] |
| Cultivate Effective Leadership | Foster leaders who can articulate a clear vision, bridge disciplinary gaps, and advocate for interdisciplinary research recognition.[60] |
| Respect Temporal Variances in Research | Understand and accommodate the varying research paces inherent to different disciplines within bioinformatics projects.[21,61] |
| Encourage Equitability and Respect | Maintain an egalitarian ethos, valuing each discipline's contributions to the bioinformatics research equally.[57] |
| Facilitate Knowledge Exchange | Regularly share insights and resources to build a cohesive, informed, and up-to-date research collective.[62,63,64,65] |
| Continually Assess and Refine Collaborative Practices | Implement a feedback loop to evaluate the efficacy of collaborative strategies and adapt as necessary.[66] |
| Time | Session Component | Details | Format |
|---|---|---|---|
| 30 min | Keynote Speech | Features speakers from various academic institutions (MDs, PhDs, MBAs), offering diverse perspectives on medical AI analysis. | Virtual/In-House |
| 60 min | Invited Talks | Talks selected based on significant contributions to medical AI, particularly in multimodality learning and AI interpretability. | Virtual/In-House |
| Half-Day | Workshop: "Applications of Generative AI, LLMs, and Traditional Machine Learning for Personalized Medicine" | Two modules: ML for precision medicine and LLMs, with interactive case studies and group discussions. | Virtual/In-House |
| 2 hours | Poster Presentations / Networking and Lunch Break | Includes selected poster presentations and a judging session with feedback, followed by a winner announcement. | In-House |
| Duration TBD | Panel Discussion: "Explainable AI and Multimodality Learning in Medical Data Analysis" | A dynamic panel comprising researchers, clinicians, ethicists, and industry professionals discusses various aspects of AI in healthcare. | Virtual/In-House |
| 2 hours (total) | Oral Presentations | Selected papers presented for 20 minutes each, focusing on diverse modalities of biological/medical data and model trustworthiness. | Virtual/In-House |
| End of Session | Closing Remarks / Speech | Summary of the day's discussions, emphasizing future developments in medical AI. | Virtual/In-House |
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