Introduction
Neurological disorders are the leading cause of disability in the world, affecting 15% of people, with neurodegenerative diseases such as Parkinson’s disease (PD) and Alzheimer’s disease currently accounting for 31-36% of neurological disorders [
1]. The prevalence of neurodegenerative disease is rising [
2], yet, despite the rapidly aging population, there is limited access to neurological healthcare and accessible diagnostic tests [
3]. At present, neurodegenerative diseases are mainly diagnosed by neurological and physical exams [
4], however, observable symptoms occur years or even decades after the onset of disease pathology. In order to detect neurodegenerative diseases in their earliest state, early identification of pathological biomarkers could potentially be a powerful tool.
α-Synuclein (αSyn) is a neural protein with remarkable conformational plasticity in its physiological form, fulfilling multiple roles in the body [
5], [
6]. However, when misfolded and/or phosphorylated, αSyn becomes pathological and aggregates into fibrils leading to synucleinopathies such as PD [
7]. Aggregation of αSyn and subsequent neurodegeneration of midbrain dopaminergic neurons produces the loss of motor symptoms used for initial diagnosis of PD [
8]. Pathological αSyn misfolding and aggregation precede clinical symptom manifestation by several years. Once PD is suspected, the diagnosis can be confirmed using cerebral spinal fluid (CSF) seeding activity testing which measures the rate at which αSyn forms toxic aggregates [
9]. Unfortunately, this test cannot be used as a screening tool for early detection of PD as it is highly invasive, requires specialized laboratory setup, and can take from 5 to 13 days [
10]. There are a few promising examples of biosensing platforms suitable for less invasive, less cumbersome, and hence more accessible αSyn quantification, such as our organic electrolyte gated FET aptasensor platform and Adam et al’s electrochemical biosensor [
11], [
12] to list a few. These emerging biosensors rely on a bioreceptor molecule, either an aptamer or an antibody, adding unique complexities to sensor shelf-life and usability as a continuous monitoring device.
As an alternative to electrochemical and electrolyte gated biosensors, electroimpedance spectroscopy (EIS) sensors, transduce sample target biomarker binding by measuring the change of reactance and resistance as a function of angular frequency [
13]. EIS is capable of rapid, non-destructive, label-free characterization and without current production to perform measurements [
14]. EIS is highly sensitive to near surface effects, making it ideal for affinity biosensors, with a simple electrode design requiring only interdigitated structures of counter and reference electrodes. Conventional EIS biosensors rely on changes resulting from enzymatic reactions facilitated by gold nanoparticles, or selective binding action in presence of a bioreceptor such as an antibody or aptamer (short oligomer DNA chains). Karaboğa et al produced an electrochemical EIS – Gold nanoparticle-Polyglutamic acid biosensor (ECB) for αSyn with a linear range of 4-200 pg/mL in blood, a limit of detection (LOD) of 1.35pg/mL and recovery rates of 96.81-102.65% [
15]. Their early results were promising; however, ECB EIS face significant challenges with sensitivity to surface variations and complex device architecture.
EIS combined with affinity-based recognition is a facile, rapid, and exceptionally durable platform for biosensing [
16,
17]. Synthetic methods of selectively binding target molecules focus on highly repeatable, selective, and cost-effective recognition processes. Conventional immunoassays, the gold standard of biomolecule quantification, rely on the selective binding of immunoglobulins (antibodies; Ig) [
16]. These biologically sourced materials are highly sensitive to environment and fabrication processes, which makes integrating them into commercial biosensors challenging. In contrast, synthetic ‘antibody mimics’ such as surface imprinted polymers are extremely simple to fabricate, low cost, and with good chemical and thermal resistance and rejuvenation abilities.
Surface Imprinted Polymers (SIP) are polymers imprinted with a biomolecule of interest to form three-dimensional stereo cavities that bind the target biomolecule with high specificity. Molecular imprinting, and stamp imprinting are the most commonly reported methods of fabricating SIPS [
17]. In molecular imprinting a monomer is polymerized, or a polymer is crosslinked around a biomarker target. Yang et al produced a P-glycoprotein SIP with an LoD of 22 fg/L, however, a key challenge with this approach is the complexity of cross linking on surface [
18]. Polymerizing and crosslinking reagents can interfere with the biomarker structure, whilst milder processes such UV cross linkable materials are often water soluble. [
14]. Stamp imprinting avoids the negative impacts of crosslinking to targets by using deposited polymer layers [
17]. Werner et al compared two methods of surface imprinting polymers, polymerization and
Escherichia coli cell stamp imprinting [
19]. They demonstrated through Atomic Force Microscopy (AFM) that both methods produce smooth surfaces and the presence of stereo cavities for detection [
19]. Pressing the biomarker target into a polymer surface forms specific cavities as small as ions, and as large as cells [
20].
In this work we report a highly specific EIS biosensor combined with a SIP nanomaterial as bioreceptor, for simple and rapid quantification of αSyn. The SIP was prepared using stamp imprinted Polycaprolactone (PCL). PCL is a low temperature solution processable, biocompatible, biodegradable polymer, with a dielectric constant of 3.2 [
21], [
22]. PCL melts at 60⁰C, low enough to minimally affect lyophilized proteins and it does not dissolve in water or swell (less than 0.25 % swelling over 10 hours [
23]), making it robust. In our previous work demonstrating a proof-of-concept PCL SIP EIS biosensor, we implemented a thermally pressed PCL SIP layer over interdigitated electrodes (IDEs) on a passivated silicon substrate. The stamp used for imprinting consisted of αSyn on polydimethylsiloxane (PDMS) [
24]. We were able to demonstrate concentration dependent EIS behavior, but with significant challenges. The first was the fabrication process relied on thermal pressing, leading to a thick, non-uniform PCL SIP layer ranging between 10µm-200µm. The high thicknesses contributed to the low resolution between concentrations. The PDMS αSyn stamp had highly variable material density due to the hydrophobic nature of the polymer, and the adhesion to PCL led to damage and low device success rate. We have greatly improved the device structure and fabrication process to produce a much more sensitive and robust biosensor. We used a solution processed PCL to control the layer thickness and a novel PVA stamp to improve the biomarker distribution. The resultant biosensor can detect low levels of αSyn in tested solutions. In order to minimize concentration dependent signal, we tested the sensitivity of the device with solutions of 1 µg/mL, with a varying ratio of αSyn and a homologous control biomolecule ß-synuclein (ßSyn). ßSyn was selected as a control material as it is a synuclein neural protein that has a similar primary structure to αSyn with slight structural differences (αSyn has 140 amino acids whereas ßSyn has 137) [
25]. αSyn is more prone to agglomeration due to its different charge distribution and shape. Testing of αSyn and ßSyn combinations showed the PCL SIP device has a linear range of 5 pg/L to 500 ng/L. With an integrated PCL microfluidic channel, the linear range is observed to be extended over 5 pg/L to 5 µg/L. Overall, we have produced a novel SIP EIS biosensor with a facile, scalable fabrication process leveraging low temperature processing.
MATERIALS AND METHODS
2.1. Device Fabrication
Stamp: 400 nm of polyvinyl alcohol (PVA) is static deposited spin coated from a 10 wt.% solution of PVA in chloroform onto a glass slide. The stamp was prepared by dropping 50µL of 1 mg/mL αSyn in deionized water (DI) onto a 0.5cm2 area and dried at room temperature for 2 hours (Figure 1a).
PCL SIP: Kapton substrates (500 EN, Dow Chemicals, USA) are patterned with 100 nm of Aluminum (Al) and 100nm of chromium (Cr) using standard lift-off photolithography techniques. The interdigitated electrodes (IDE) with an area of 25mm2, with 20 fingers and a measured spacing of 102 µm and width of 153 µm (Figure 1b). A 600 nm thick layer of PCL is deposited on the IDEs by dynamic deposition spin coating (at 6000 rpm). The stamp is placed in contact with the PCL surface, heated to 60⁰C and pressed using a 200g weight for 2 minutes. The structure is then removed from the heat and allowed to cool. The PCL surface and stamp are submerged in water allowing the PVA stamp polymer to dissolve, releasing the EIS device without damage. The SIP EIS biosensors are washed with 0.5 mM ascorbic acid and deionized water (DI) to ensure removal of the stamp biomolecules prior to testing.
PCL microfluidic channel: A microfluidic channel was made by melting PCL into a mold (
Figure 1c). The well depth was 2 mm deep, and luer lock tubing was melted into the microfluidic channel for simple sample loading and waste removal. The microfluidic channel was then adhered to the PCL microfluidic channel using chloroform as a solvent. The PCL of the microfluidic channel and the surface forms an excellent seal after the chloroform off gases, leaving an integrated sample handling method.
2.2. Sample Preparation
αSyn in DI test samples were created by serial dilutions of from 10 mg/L of dried αSyn material in DI. 10-fold serial dilutions were produced from 10 mg/L to 100 ag/L. Constant ionic concentration solutions were created using αSyn and ßSyn in varying ratios to produce solutions of serially decreasing αSyn solutions, but with a constant total ionic concentration. The concentrations of αSyn in these solutions was 10-fold dilutions from 50 µg/L down to 100 ag/L.
αSyn monomer and ßSyn were supplied by the LADDER group in Chemistry Department, Carleton University. To avoid unwanted aggregation of the material, all materials were stored at -20⁰C when not in use, and vortexed prior to use.
2.3. Testing Processes
Impedance analysis is performed using an Agilent 4294A impedance analyzer (Fig 1d). The impedance magnitude and phase angle are collected during a logarithmic frequency sweep from 40 Hz to 100 MHz with an amplitude of 500mV. During testing, 10µL of sample is incubated on the surface for 1 minute prior to testing. Each data collection was repeated three times. The surface is then rinsed with DI, followed by 0.5 mM ascorbic acid, and a final DI rinse and N2 drying to ensure all material is removed from the surface between tests. The device is then ready for the next test.
The impedance magnitudes were converted to the real (Z’) and imaginary (Z”) components and plotted as a Nyquist plot for parameter extraction during sensor optimization. Experimental data was analyzed using MATLAB.
2.4. Atomic Force Microscopy of Soft-Printed SIP Surface
SEM was performed with a Tescan Vega-II XMU VPSEM.
Figure 2a shows the SEM topography of a 238.1 µm by 238.1 µm scan of a SIP on EIS electrode post testing and regeneration. The scale-like appearance of the PCL is a factor of the heat-melt process involved in the stamping process. The important factor here is the size of the crystals formed. Without the presence of a stamp, we observe crystals on the scale of 100 µm – mm. In the presence of the stamp, we observe significantly smaller crystals (scale of 2-5 µm) formed by the stamp protein acting as nucleation points. Clear cavities are observed well distributed across the surface. These are the binding sites of the PCL SIP. Based on the partial specific volume, calculating the approximate volume occupied by a protein of mass M (kDa) is volume (nm3) =1.212*M, giving a volume of 17.5nm3, so assuming a globular protein the diameter should be 2.78nm for αSyn monomers [
26]. We expect the surface cavities to be in this range for single αSyn monomers, which we further examined using atomic force microscopy.
Atomic Force measurements took place in air using a Veeco Dimension 3100 AFM in tapping mode with a silicon probe tip. Nanoscale AFM lateral resolution is dependent on tip sharpness and profile, lateral feature size is inflated for adjacent particles or rough surfaces. z dimension deflection is a reliable indicator of feature size.
Figure 2b shows the AFM topography of a 1 µm by 1 µm scan of a PCL SIP post testing and regeneration. The largest surface cavities have depths of 9.2 ± 5.5 nm, with the smallest cavities down to a few nm. This indicates that there is some agglomeration of αSyn.
Figure 2c shows the AFM topography of a 1 µm by 1 µm scan of an αSyn Stamp with lyophilized αSyn on the surface. The z dimension sizes of molecules were between 3 - 9.2 nm. Material size variation is observed on the slides. This confirms that there is some anticipated agglomeration. Thus, the imprints on the PCL SIP shown in figure 2b were consistent with the size of lyophilized material on the surface of the stamp. We observed surface cavities consistent with effective stamping of the PCL surface.