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A peer-reviewed article of this preprint also exists.
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Submitted:
20 March 2024
Posted:
21 March 2024
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SNP | Location | Gene region | Base change | Citation | Related phenotype |
---|---|---|---|---|---|
TNFα (rs1800629) | Chr 6:31575254 (GRCh38.p14) |
Promoter region |
G/A | Velez et al.[20] Yilmaz et al.[32] Jones et al.[36] Han et al.[30] Jie et al.[51] Drew.Piasecka et al.[52] Zhu et al.[50] Chen et al.[53] |
Recurrent pregnancy loss Premature birth |
IL – 10 (rs1800896) | chr 1:206773552 (GRCh38.p14) | Promoter region |
T/C | Wagner et al.[54] Khorrami et al.[55] Čuljak et al.[56] Zhu et al. [49] Pandey et al.[26] Menon et al.[21] Lyubomirskaya et al.[25] Cao et al.[57] |
Cervical cancer Alzheimer’s disease Breast cancer Preterm birth |
IL – 6 (rs1800796) | Chr7: 22726627 (GRCh38.p14) |
Promoter region | G/A | Shao et al.[58] Kaanene et al.[59] Santos et al.[60] Hou et al.[61] Luai et al.[62] Han et al.[30] Lyubomirskaya et al.[25] |
Rheumatoid arthritis Lung cancer Gastritis and gastric cancer Chronic obstructive pulmonary disease Coronary artery disease Preterm birth |
Term birth (n = 200) |
PTB (n = 199) | Total (n = 399) |
P | |
---|---|---|---|---|
Mother’s age [years]) [Median (IQR)] | 30 (26 – 34) | 31 (27 – 35) | 0.20‡ | |
BMI (kg/m2) [Median (IQR)] | 27.4 (24.5 – 30.6) | 26.7 (24.2 – 30.1) | 0.35‡ | |
Underweight [n (%) ] | 2 (1) | 0 | 2 (0.5) | 0.15† |
Normal weight [n (%) ] | 54 (27) | 66 (33) | 120 (30.1) | |
Overweight [n (%) ] | 144 (72) | 133 (67) | 277 (69.4) | |
Coffee consumption [n(%)] | 167 (83.5) | 155 (77.9) | 322 (80.7) | 0.17* |
Smoking habit [n(%)] | 52 (25.9) | 63 (31.5) | 115 (28.7) | 0.21* |
Pregnancy complications [n(%)] | 104 (51.7) | 150 (75.4) | 254 (63.7) | <0.001* |
Uroinfection [n(%)] | 18 (9) | 27 (13.5) | 45 (11.2) | 0.15* |
Positive cervical swabs [n(%)] | 44 (21.9) | 35 (17.5) | 79 (19.7) | 0.27* |
Vaginal bleeding during pregnancy [n(%)] | 14 (7) | 45 (22.6) | 59 (14.8) | <0.001* |
PPROM [n(%)] | 47 (23.4) | 118 (59.6) | 165 (41.4) | <0.001* |
Number of previous births [Median (IQR)] |
2 (1 – 2) | 1 (1 – 2) | 0.27‡ | |
PB in family anamnesis [n(%)] | 0 | 33 (16.5) | 33 (8,2) | <0.001* |
Number of previous PB (n=32) [Median (IQR)] | 1 (n = 1) | 1 (min 1 – max 3) | - | |
Gestational age [Median (IQR)] | 39+4 (39 – 40+3) | 34+6 (32 – 36) | <0.001‡ | |
Mode of delivery [n(%)] | ||||
Vaginal birth | 195 (98) | 142 (71) | 337 (84) | <0.001* |
Cesarean section | 5 (2) | 57 (29) | 62 (16) | |
Premature birth [n(%)] | ||||
Extremely early PB | - | 16 (8) | - | - |
Early PB | - | 32 (16) | - | - |
Late PB | - | 151 (76) | - | - |
Birth weight of infants [g] | 3450 (3123 – 3800) | 2430 (1816 – 2780) | <0.001‡ | |
Infant gender | ||||
Male | 100 (50) | 117 (59) | 217 (54) | 0.07* |
Female | 100 (50) | 81 (41) | 181 (46) |
SNP/inheritance models | Genotip [n (%)] | OR (95 % CI) |
P* | ||
Term birth (n = 200) |
PTB (n = 199) |
||||
a TNFα (rs1800629) | G/G | 154 (77) | 149 (74.9) | 1 | 0.22 |
A/G | 44 (22) | 43 (21.6) | 1.01 (0.63 – 1.63) | ||
A/A | 2 (1) | 7 (3.5) | 3.62 (0.74 – 17.7) | ||
Alelles | G | 352 (88) | 341 (86) | 0.82 (0.54 – 1.23) | 0.3 |
A | 48 (12) | 57 (14) | |||
Dominant inheritance model | G/G | 154 (77) | 149 (74.9) | 1 | 0.62 |
A/G – A/A | 46 (23) | 50 (25.1) | 1.12 (0.71-1.78) | ||
Recessive inheritance model | G/G – A/G | 198 (99) | 192 (96.5) | 1 | 0.08 |
A/A | 2 (1) | 7 (3.5) | 3.61 (0.74-17.59) | ||
Superdominant inheritance model | G/G – A/A | 156 (78) | 156 (78.4) | 1 | 0.92 |
A/G | 44 (22) | 43 (21.6) | 0.98 (0.61 – 1.57) | ||
bIL – 10 (rs1800896) | A/A | 68 (34) | 62 (31) | 1 | 0.05 |
A/G | 88 (44) | 109 (55) | 1,36 (0.87 – 2.12) | ||
G/G | 44 (22) | 28 (14) | 0,70 (0.39 – 1.25) | ||
Alelles | A | 224 (56) | 233 (59) | 1,11 (0,84 – 1,47) | 0.47 |
G | 176 (44) | 165 (41) | |||
Dominant inheritance model | A/A | 68 (34) | 62 (31.2) | 1 | 0.54 |
A/G – G/G | 132 (66) | 137 (68.8) | 1,14 (0,75 - 1,73) | ||
Recessive inheritance model | A/A – A/G | 156 (78) | 171 (85.9) | 1 | 0.04 |
G/G | 44 (22) | 28 (14.1) | 0.58 (0.34-0.98) | ||
Superdominant inheritance model | A/A – G/G | 112 (56) | 90 (45.2) | 1 | 0.03 |
A/G | 88 (44) | 109 (54.8) | 1.54 (1.04-2.29) | ||
cIL – 6 (rs1800796) | G/G | 176 (88) | 176 (88.4) | 1 | 0.99 |
C/G | 23 (11.5) | 22 (11.1) | 0.96 (0,51 – 1.78) | ||
C/C | 1 (0.5) | 1 (0.5) | 1.00 (0.06 – 16.11) | ||
Alelles | G | 375 (94) | 374 (94) | 1.04 (0.58 – 1.85) | 0.90 |
C | 25 (6) | 24 (6) | |||
Dominant inheritance model | G/G | 176 (88) | 176 (88.4) | 1 | 0.89 |
C/G – C/C | 24 (12) | 23 (11.6) | 0.96 (0.52-1.76) | ||
Recessive inheritance model | G/G – C/G | 199 (99.5) | 198 (99.5) | 1 | >0.99 |
C/C | 1 (0.5) | 1 (0.5) | 1.01 (0.06-16.18) | ||
Superdominant inheritance model | G/G – C/C | 177 (88.5) | 177 (88.9) | 1 | 0.89 |
C/G | 23 (11.5) | 22 (11.1) | 0.96 (0.51-1.78) |
SNP | Genotype [n (%)] | P* | |||
Extremely early PTB (n = 16) | Early PTB (n = 32) |
Late PTB (n = 151) |
|||
TNFα (rs1800629) | A/A | 0 | 0 | 7 (5) | 0,91 |
A/G | 3 (19) | 7 (22) | 33 (22) | ||
G/G | 13 (81) | 25 (78) | 111 (73) | ||
IL – 10 (rs1800896) | A/A | 5 (31) | 12 (38) | 45 (30) | 0,10 |
A/G | 6 (38) | 19 (59) | 84 (56) | ||
G/G | 5 (31) | 1 (3) | 22 (14) | ||
IL – 6 (rs1800796) | C/C | 0 | 0 | 1 (1) | 0,89 |
C/G | 1 (6) | 4 (13) | 17 (11) | ||
G/G | 15 (94) | 28 (88) | 133 (88) |
SNP/Inheritance model | Genotype [n (%)] | OR (95 % CI) |
P* | ||
Term birth (n = 200) |
Extremely early PTB (n = 16) |
||||
TNFα (rs1800629) | G/G | 154 (77) | 13 (81.2) | 1 | 0.81 |
A/G | 44 (22) | 3 (18.8) | 0.81 (0.22 – 2.96) | ||
A/A | 2 (1) | 0 | 0 (0 – NA) | ||
Alelle | G | 352 (88) | 29 (91) | 1.32 (0.39 – 4.49) | 0.66 |
A | 48 (12) | 3 (9) | |||
Dominant model of inheritance | G/G | 154 (77) | 13 (81.2) | 1 | 0.69 |
A/G – A/A | 46 (23) | 3 (18.8) | 0.77 (0.21 – 2.83) | ||
Recessive model of inheritance | G/G – A/G | 198 (99) | 16 (100) | 1 | 0.58 |
A/A | 2 (1) | 0 | 0 (0 – NA) | ||
Superdominant model of inheritance | G/G – A/A | 156 (78) | 13 (81.2) | 1 | 0.76 |
A/G | 44 (22) | 3 (18.8) | 0.82 (0.22 – 3.0) | ||
IL – 10 (rs1800896) | A/A | 68 (34) | 5 (31.2) | 1 | 0.71 |
A/G | 88 (44) | 6 (37.5) | 0.93 (0.27 – 3.17) | ||
G/G | 44 (22) | 5 (31.2) | 1.55 (0.42 – 5.65) | ||
Alelle | A | 224 (56) | 16 (50) | 0.79 (0.38 – 1.62) | 0.51 |
G | 176 (44) | 16 (50) | |||
Dominant model of inheritance | A/A | 68 (34) | 5 (312) | 1 | 0.82 |
A/G – G/G | 132 (66) | 11 (68.8) | 1.13 (0.38 – 3.39) | ||
Recessive model of inheritance | A/A – A/G | 156 (78) | 11 (68,8) | 1 | 0.41 |
G/G | 44 (22) | 5 (31.2) | 1.61 (0.53 – 4.88) | ||
Superdominant model of inheritance | A/A – G/G | 112 (56) | 10 (62.5) | 1 | 0.61 |
A/G | 88 (44) | 6 (37.5) | 0.76 (0.27 – 2.18) | ||
IL – 6 (rs1800796) | G/G | 176 (88) | 15 (93.8) | 1 | 0.73 |
C/G | 23 (11.5) | 1 (6.2) | 0.51 (0.06 – 4.04) | ||
C/C | 1 (0.5) | 0 | 0 (0 – NA) | ||
Alelle | G | 375 (94) | 31 (97) | 2,07 (0.27 – 15.77) | 0.48 |
C | 25 (6) | 1 (3) | |||
Dominant model of inheritance | G/G | 176 (88) | 15 (93.8) | 1 | 0.46 |
C/G – C/C | 24 (12) | 1 (6.2) | 0.49 (0.06 – 3.87) | ||
Recessive model of inheritance | G/G – C/G | 199 (99.5) | 16 (100) | 1 | 0.69 |
C/C | 1 (0.5) | 0 | 0 (0 – NA) | ||
Superdominant model of inheritance | G/G – C/C | 177 (88.5) | 15 (93.8) | 1 | 0.44 |
C/G | 23 (11.5) | 1 (6.2) | 0,51 (0.06 – 4.07) | ||
G/G | 176 (88) | 15 (93.8) | 1 |
SNP/inheritance models | Genotype [n (%)] | OR (95 % CI) |
P* | ||
Term birth (n = 200) |
Early PTB (n = 32) |
||||
TNFα (rs1800629) | G/G | 154 (77) | 25 (78.1) | 1 | .,74 |
A/G | 44 (22) | 7 (21.9) | 0.98 (0.40 – 2.42) | ||
A/A | 2 (1) | 0 | 0 (0 – NA) | ||
Alelle | G | 352 (88) | 57 (89) | 1.11 (0.48 – 2.57) | 0.81 |
A | 48 (12) | 7 (11) | |||
Dominant inheritance model | G/G | 154 (77) | 25 (78.1) | 1 | 0.89 |
A/G – A/A | 46 (23) | 7 (21.9) | 0-94 (0.38-2.31) | ||
Recessive inheritance model | G/G – A/G | 198 (99) | 32 (100) | 1 | 0.44 |
A/A | 2 (1) | 0 | 0 (0 - NA) | ||
Superdominant inheritance model | G/G – A/A | 156 (78) | 25 (78.1) | 1 | 0.99 |
A/G | 44 (22) | 7 (21.9) | 0.99 (0.40-2.45) | ||
IL – 10 (rs1800896) | A/A | 68 (34) | 12 (37,5) | 1 | 0.01 |
A/G | 88 (44) | 19 (59,4) | 1.22 (0.56 – 2.69) | ||
G/G | 44 (22) | 1 (3,1) | 0.13 (0.02 – 1.03) | ||
Alelle | A | 224 (56) | 43 (67) | 1.61 (0.92 – 2.81) | 0.09 |
G | 176 (44) | 21 (33) | |||
Dominant inheritance model | A/A | 68 (34) | 12 (37.5) | 1 | 0.70 |
A/G – G/G | 132 (66) | 20 (62.5) | 0.86 (0.40-1.86) | ||
Recessive inheritance model | A/A – A/G | 156 (78) | 31 (96.9) | 1 | 0.003 |
G/G | 44 (22) | 1 (3.1) | 0.11 (0.02-0.86) | ||
Superdominant inheritance model | A/A – G/G | 112 (56) | 13 (40.6) | 1 | 0.11 |
A/G | 88 (44) | 19 (59.4) | 1.86 (0.87-3.97) | ||
IL – 6 (rs1800796) | G/G | 176 (88) | 28 (87.5) | 1 | 0.85 |
C/G | 23 (11.5) | 4 (12.5) | 1.09 (0.35 – 3.40) | ||
C/C | 1 (0.5) | 0 | 0 (0 – NA) | ||
Alelle | G | 375 (94) | 60 (94) | 1.0 (0.34 – 2.97) | >0.99 |
C | 25 (6) | 4 (6) | |||
Dominant inheritance model | G/G | 176 (88) | 28 (87,5) | 1 | 0.94 |
C/G – C/C | 24 (12) | 4 (12,5) | 1.05 (0.34-3.25) | ||
Recessive inheritance model | G/G – C/G | 199 (99.5) | 32 (100) | 1 | 0.59 |
C/C | 1 (0.5) | 0 | 0 (0 - NA) | ||
Superdominant inheritance model | G/G – C/C | 177 (88.5) | 28 (87.5) | 1 | 0.87 |
C/G | 23 (11.5) | 4 (12.5) | 1.10 (0.35-3.42) |
SNP/inheritance models |
Genotype [n (%)] | OR (95 % CI) |
P* | ||
Term birth (n = 200) |
Late PTB (n = 151) |
||||
TNFα(rs1800629) | G/G | 154 (77) | 111 (73.5) | 1 | 0.09 |
A/G | 44 (22) | 33 (21.9) | 1.04 (0.62-1.74) | ||
A/A | 2 (1) | 7 (4.6) | 4.86 (0.99-23.82) | ||
Alelle | G | 352 (88) | 255 (84) | 0.69 (0.45 – 1.07) | 0.09 |
A | 48 (12) | 47 (16) | |||
Dominant inheritance model | G/G | 154 (77) | 111 (73.5) | 1 | 0.45 |
A/G – A/A | 46 (23) | 40 (26.5) | 1.21 (0.74-1.97) | ||
Recessive inheritance model | G/G – A/G | 198 (99) | 144 (95.4) | 1 | 0.03 |
A/A | 2 (1) | 7 (4.6) | 4.81 (0.99-23.51) | ||
Superdominant inheritance model | G/G – A/A | 156 (78) | 118 (78.2) | 1 | 0.97 |
A/G | 44 (22) | 33 (21.9) | 0.99 (0.59-1.65) | ||
IL – 10 (rs1800896) | A/A | 68 (34) | 45 (29.8) | 1 | 0.07 |
A/G | 88 (44) | 84 (55.6) | 1.44 (0.89-2.33) | ||
G/G | 44 (22) | 22 (14.6) | 0.76 (0.40-1.43) | ||
Alelle | A | 224 (56) | 174 (58) | 1.07 (0.79 – 1.44) | 0.67 |
G | 176 (44) | 128 (42) | |||
Dominant inheritance model | A/A | 68 (34) | 45 (29.8) | 1 | 0.40 |
A/G – G/G | 132 (66) | 106 (70.2) | 1.21 (0.77-1.91) | ||
Recessive inheritance model | A/A – A/G | 156 (78) | 129 (85.4) | 1 | 0.08 |
G/G | 44 (22) | 22 (14.6) | 0.60 (0.34-1.06) | ||
Superdominant inheritance model | A/A – G/G | 112 (56) | 67 (44.4) | 1 | 0.03 |
A/G | 88 (44) | 84 (55.6) | 1.60 (1.04-2.44) | ||
IL – 6 (rs1800796) | G/G | 176 (88) | 133 (88.1) | 1 | 0.98 |
C/G | 23 (11,5) | 17 (11.3) | 0.98 (0.50-1.90) | ||
C/C | 1 (0.5) | 1 (0.7) | 1.32 (0.08-21.35) | ||
Alelle | G | 375 (94) | 283 (94) | 0.99 (0.54 – 1.84) | 0.98 |
C | 25 (6) | 19 (6) | |||
Dominant inheritance model | G/G | 176 (88) | 133 (88.1) | 1 | 0.98 |
C/G – C/C | 24 (12) | 18 (11.9) | 0.99 (0.52-1.90) | ||
Recessive inheritance model | G/G – C/G | 199 (99.5) | 150 (99.3) | 1 | 0.84 |
C/C | 1 (0.5) | 1 (0.7) | 1.33 (0.08-21.38) | ||
Superdominant inheritance model | G/G – C/C | 177 (88.5) | 134 (88.7) | 1 | 0.94 |
C/G | 23 (11.5) | 17 (11.3) | 0.98 (0.50-1.90) |
Haplotype | n (%) | OR (95 %C I) | χ2 | P* | adjP† | |||
PTB | Term birth | |||||||
Mothers | χ2 = 2,41 df = 4 P = 0,66 |
|||||||
rs1800629 | rs1800896 | rs1800796 | ||||||
G | G | G | 117 (29.3) | 134 (33.5) | 0.83 (0.61 – 1.11) | 1.56 | 0.22 | 0.42 |
G | A | G | 210 (52.7) | 199 (49.7) | 1.13 (0.85 – 1.49) | 0.73 | 0.21 | 0.55 |
A | G | G | 29 (7.2) | 25 (6.2) | 1.18 (0.68 – 2.05) | 0.34 | 0.56 | 0.64 |
A | A | G | 18 (4.5) | 17 (4.2) | 1.07 (0.54 – 2.10) | 0.67 | 0.41 | 0.85 |
G | G | C | 10 (2.5) | 14 (3.5) | 0.71 (0.31 - 1.62) | 0.04 | 0.85 | 0.85 |
ß | Wald | P | OR (95 CI%) | |
* Bivariant logistic regression | ||||
TNFα (rs1800629) (A/G – A/A vs. G/G) | 0.738 | 5.47 | 0.02 | 2.09 (1.13 – 3.88) |
IL – 10 (rs1800896) (A/G – G/G vs. A/A) | 0.105 | 0.22 | 0.64 | 1.11 (0.72 – 1.71) |
IL – 6 (rs1800796) (C/G – C/C vs. G/G) | -0.225 | 0.46 | 0.50 | 0.80 (0.42 – 1.53) |
* Multivariant logistic regression | ||||
TNFα (rs1800629) (A/G – A/A vs. G/G) | 0.74 | 5.47 | 0.02 | 2.10 (1.13 to 3.88) |
Constant | -0.76 | 0.66 | 0.04 |
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