A flow diagram of the selection process is presented in
Figure 1. 319 papers were initially identified and after duplicate removal, 296 were considered eligible for title-abstract screening. Subsequently, 66 articles were selected for full text screening, 20 of them were excluded for reasons presented in
Figure 1, while 36 met the inclusion criteria and were included in this review. Furthermore, the references of the included studies and references from other relevant studies from high impact journal were hand-searched and 8 papers that were lost from the initial literature search were included as well. Thus, the 44 studies that were included in total investigated the association between vaginal microbial composition and preterm birth (PTB), miscarriage, preeclampsia (PE), ectopic pregnancy, gestational diabetes mellitus (GDM), chorioamnionitis (CAT) and preterm premature rupture of membranes (PPROM).
3.1.1. Preterm Birth
Preterm birth is one of the leading causes of neonatal morbidity and mortality accounting for virtually 15 million births annually worldwide [
21]. Many conditions can provoke PTB, including preterm premature rapture of membranes or infections [
22].
Lactobacilli, which are usually the predominant species in the vaginal microbiome, antagonize against dysbiosis-causing microorganisms and restrain the proliferation of anaerobes commonly correlated with bacterial vaginosis [
23]. Thus, theoretically disruption in the vaginal microbial composition could undermine the protective mechanisms against vaginal dysbiosis and consequently against PTB.
Multiple studies have inquired into the probable association between vaginal microbial composition and PTB. The largest case-control study with 449 participants (94 in the PTB arm and 355 in the healthy control arm) suggested that
L. gasseri/L. johnsonii, L. crispatus, L. acidophilus, L. iners, R. solanacearum and
B. longum/B. breve might be associated with decreased risk of early but not late PTB. Furthermore, no correlation was found between CST assignment and PTB risk [
24]. No correlation was either found between specific CSTs and PTB in a retrospective study, where
Lactobacillus dominated communities had an inverse association with PTB in women swabbed before 12 weeks and a direct association with women swabbed at or after 12 weeks [
25]. Similar results arise from a small retrospective study, a prospective study and two case-control studies where the abundance or depletion of Lactobacillus in the vaginal microbiome and the CST assignment were not significantly associated with PTB [
26,
27,
28]. Additionally, results from another case-control study indicate that, although in the term group the richness and diversity of the microbiome remained stable through the course of pregnancy while in the PTB group both richness and diversity were significantly decreasing until labor, after taxonomic composition analysis, no association between any of the detected taxa and PTB reached statistical significance [
29].
Given that the first indicator of important differences in microbial composition is the elevated alpha-diversity many studies have employed it as an initial step of their analysis. Starting from the alpha diversity analysis, which revealed statistically significant differences regarding richness and diversity between the groups (p<0.01), higher bacterial loads and higher rates of mollicutes, meaning
Mycoplasma and
Ureaplasma, were spotted in the PTB compared to the control group (p= 0.049 and p=0.012 respectively) [
30]. In a prospective study, where the alpha-diversity assessed through Shannon indices and number of observed ASVs were higher in the PTB group (p= 0.0009 and 0.0003 respectively), increased rates of
Atopobium, Gardnerella and
Prevotella were observed in PTB cases. In addition, after hierarchical clustering analysis it was concluded that the PTB group was significantly more frequently assigned to CST-IV (p=0.004), while at the taxa level increased relative abundance of
Lactobacillus was positively associated with term birth (p=0.007) [
31]. Comparable outcomes emerge from a prospective cohort study where vaginal microbiotas of healthy uncomplicated cohort were characterized by low diversity and
Lactobacillus dominance, while women who experienced PTB had intermediate or low profiles of
Lactobacillus and high diversity (p=0.0011) even after the analysis was adjusted for potential confounders, such as ethnicity, BMI, smoking status, and medical interventions [
32]. Except for
Lactobacillus spp. depletion, increased abundance of
Gardnerella is associated with PTB (p=0.0070). In fact, using an arbitrary threshold of 70%
Lactobacillus spp. abundance and 0.1% of
Gardnerella abundance the researchers calculated an OR for PTB of 5.81 (95% CI 1.12-33.7) and 5.12 (95% CI 1.05-31.1) respectively [
33].
Besides diversity and richness of the vaginal microbiome, differences seem to be present in CST assignment as well [
34]. More specifically, in a prospective study, women delivering at term were mostly assigned to CST-IV, while women from the PTB arm were mostly assigned to CST-III [
35]. Contradicting results emerge from a cross-sectional study where both CST-III (
L. iners dominated) and CST-IV were associated with spontaneous PTB with an OR as high as 4.1 (95% CI 1.1-infinity) and 7.7 (95% CI 2.2-infinity), respectively. In addition, in marginal analysis the relative abundance of Gardnerella vaginalis (p=0.011), non-iners
Lactobacillus (p=0.016), and
Mobiluncus curtisii (p=0.035) and the presence of
Atopobium vaginae (p=0.049), Bacterial Vaginosis-Associated Bacteria (BVAB)-2 (p=0.024),
Dialister microaerophilis (p=0.011), and
Prevotella amnii (p=0.044) were associated with spontaneous PTB [
36]. Moreover, in a prospective study, a higher frequency of CST-I assignment was observed in the term group compared to the preterm both at 20-22 weeks gestation and 26-28 weeks gestation (40.32 vs. 16.66% p=0.0002 and 20.69 vs. 16.66% p=0.03 respectively). Also, a diminished proportion of CST-V dominant microbiota was present in the term compared to the preterm group at both time points (9.68 and 22.22% p=0.0002 and 10.34 and 25% p=0.03 respectively). In addition, at 26-28 weeks gestation CST-II was assigned to 28% of term patients and to no patients in the preterm group (p<0.0001) [
37].
Assigning vaginal microbiomes in CSTs constitutes the basis for a more systematic analysis but taxonomic composition analysis can provide further information. For example, a retrospective study concluded that the absence of elevated numbers of OTUs of
L. iners and
L. jensenii might be the main difference between women delivering at term compared to PTB and might serve as a biomarker for PTB prediction [
38]. Accordingly, to the aforementioned results, a cross-sectional study indicated that in vaginal specimens obtained at 16 weeks gestation the dominance of
L. iners was significantly higher in early PTB cases compared to term pregnancies (p=0.003), while
L. Crispatus dominant microbiomes more frequently derived from the control group (p=0.009) [
39]. The association of
L. iners with PTB was identified by a prospective study too (p<0.001), which also added that the combination of two or more
Lactobacillus species had a beneficial impact on pregnancy duration [
40]. The relative abundance of various
Lactobacillus species was investigated by a prospective study which used a PCR array specific for 15 bacteria and no significant association was observed with PTB, whereas high numbers of
L. crispatus, L gasseri, or
L jensenii was negatively associated with sPTB (p=0.05) while at the same time the detection of
L. gasseri was predictive of term birth (p=0.017) [
41].
Besides
Lactobacillus spp. relative abundance evaluation microbiome analysis aims, also, at detecting differences in other microbial taxa. For instance, diversity in microbial composition was higher in the PTB group and the relative abundance of several taxa including BVAB1,
Prevotella cluster 2 and
Seanthia amnii were also higher in the PTG arm reaching statistical significance (p<0.05). In swabs collected early in pregnancy (6-24 weeks gestation), the presence of
Megasphera type 1 and TMP-H1 were associated with PTB. In fact, the incorporation of S
. amnii, Prevotella cluster-2, TMP-H1 and BVAB1 in an early prediction model for PTB in swabs collected at 24 weeks gestation or earlier exhibited a sensitivity of 77.4% and specificity of 76.3% [
42].
From the analysis of the longitudinal samples from a prospective study it was concluded that women in the PTB group experience an increase in
P. buccalis (p< 0.0001) while women delivering at term have a significant increase in
L. crispatus and
Finegolidia (p=0.0131 and p<0.0001 respectively) [
43]. Several other taxa, including
Gardnerella spp.,
Mobiluncus curtsii/mulieris and
Sneathia sanguinegens, with
M. curtsii/mulieris, genus
Atopobium, and genus
Megasphaera exert a significant association with PTB [
44,
45,
46]. Interestingly, a case-control study expanding the analysis beyond bacterial to viral composition of the vaginal environment concluded that Among Papillomaviridae,
Polyomaviridae,
Herpesviridae,
Poxviridae,
Adenoviridae, and
Anelloviridae, no virus or viral group was found to be associated with PTB. However, increased viral richness was a predictor of PTB risk (p=0.0005) and conversely low viral richness was correlated with term birth (p=0.03). Also, having both bacterial and viral diversity during the first trimester was a significant predictor of PTB (RR 3.12 95% CI 1.00-9.83 p=0.04) [
47].
3.1.2. Miscarriage
Miscarriage is a common issue in obstetrics complicating about 25% of pregnancies worldwide and leading to an estimated average of 44 pregnancy losses per minute [
48]. Miscarriages can be divided into two categories based on the time point of occurrence: early miscarriages happening before 12 weeks gestation and late miscarriages happening between 12- and 22-weeks’ gestation. Also, recurrent miscarriage defined as three or more consecutive miscarriages constitutes another variation of the condition [
49,
50].
Many studies attempted to elucidate the association between vaginal microbial composition and miscarriage. First, women experiencing miscarriage seem to have a vaginal microbiome characterized by increased diversity (p= 2.33*10⁻⁸) and richness (p=0.0005) compared to women with healthy ongoing pregnancies. This diversity might derive from differences in abundance rates of
Bacteroides plebeius, Bifidobacterium breve, Gardnerella vaginalis, Mycoplasma girerdii and
L. iners, Gardnerella and Prevotella, respectively, but no analysis for statistical significance regarding taxonomy was conducted in these studies [
51,
52]. Moreover, a relatively large prospective study observed that miscarriage in both first and second trimester is associated with
Lactobacillus species depletion (p=0.0053), while the predominance of CST-IV was significantly different in the miscarriage group compared to the control group (p= 0.031). Interestingly, the
Lactobacillus species depletion and the high bacterial diversity precede the diagnosis of miscarriage [
53].
Furthermore, based on the results of the alpha and beta diversity analysis which revealed an increased microbial diversity in miscarriage cases (Shannon index 5.48 vs 5.18 p=0.02), a prospective study attempted to discover the origins of this intergroup diversity. Although
Lactobacillus was the predominant species in both arms, the relative abundance was lower in the case than in the reference group (16.51% vs 23.00% p<0.05) and simultaneously a depleted abundance of L.
jensenii and L.
gasseri was observed in the miscarriage group (p = 0.00078 and p = 0.00069 respectively). Additionally, differences in the microbial diversity were attributed to greater abundance of
Mycoplasma genitalium and
Ureaplasmas (13.09% vs 10.38% and 9.18% vs 6.59% respectively, both p< 0.05) in the reference group [
54]. Increased
Ureaplasma species rate, specifically
U. parvum, has been, also, reported in another study along with more frequent assignment to CST-III [
34]. Contrary, a prospective study concluded that elevated BVAB-3 log concentration in women experiencing miscarriage was the only significant dissimilarity between the two groups (4.27 vs 3.71 p=0.012). More specifically, in women aged <21 years one unit increase in the BVAB-3 log concentration wound elevate the risk of miscarriage by 67.8% [
55]. The same authors conducted the largest prospective relative study and concluded that the outcome of interest, meaning the second trimester pregnancy loss, was significantly associated with diminished loads of
Lactobacilli early in pregnancy even after adjusting for confounding factors (HR 1.32 95% CI 1.10-1.64) [
56].
Recurrent miscarriage (RM) has been investigated by several studies as a different outcome in non-pregnant women. The first study to ever inquire into this question employed the ACE, Simpson, and Chao diversity indices to assess alpha diversity and no statistically significant differences occurred. Only bacterial richness was higher in the RM group, meaning that more Operational Taxonomic Units (OTUs) were detected in the case group. After taxonomic composition analysis it was indicated that
Atopobium, Prevotella and
Streptococcus taxa were significantly more abundant in miscarriage group, whereas
Lactobacillus and
Gardnerella were more commonly found in the control group [
57]. In agreement with these results comes a case-control study which revealed that
Lactobacillus iners was significantly decreased while
Ruminococcaceae_UCG-005 and
Anaerococcus hydrogenalis were significantly more abundant in the RM group (p<0.05). Two taxa had significantly higher relative abundance in the control group including
Lactobacillus and
Gardnerella [
58]. In partial contrast with the two studies above comes a cross-sectional study reporting decreased rates of
Lactobacillus species in the RM group but increased relative abundance of
Garnerella vaginalis,
Prevotella bivia and
Porphyromonas spp. (p<0.05) [
59]. Elevated
G. vaginalis rates have been again reported in the RM arm compared to a healthy control arm of a cross-sectional study (8.7% vs 5.7% p=0.001) [
60]. Using women with medically induced abortion as controls, another cross-sectional study showed that alpha diversity is increased in RM women (p<0.05) and at the genus level the expressive abundance of
Pseudomonas, Roseburia, Collinsella aerofaciens and
Arthrobacter is higher [
61]. Only one study concluded that although there was a significant difference in beta diversity (p=0.036) neither the alpha diversity not the taxonomic composition analysis of the vaginal microbiome revealed significant dissimilarities between the groups [
62].