Five separate flasks of cells were treated with 1, 10, 100, or 1000 nM Ang II for 72 h as per the methods outlined above. Real-time PCR analysis followed our established methods [
30]. Colon epithelial cells were briefly homogenized in TRIzol Reagent (Life Technologies, Carlsbad, CA, USA) and RNA was extracted as per the manufacturer’s protocol. A 2100 Bioanalyzer (Agilent) was used to evaluate RNA quality (RNA integrity values > 7). The cDNA synthesis proceeded with 750 ng RNA using the iScript (BioRad) kit followed by DNase treatment (Turbo DNase, Ambion) as per the manufacturer’s instructions. No reverse transcriptase (NRT) controls (n = 4) and 2 no-template controls were prepared and included in all qPCR reactions. NRTs were constructed from a pool of 3 different RNA samples chosen at random, and this was carried out 3 times. The cDNA synthesis reaction proceeded as follows: 5 min at 25 ºC, 30 min at 42 ºC, and 5 min at 85 ºC using a MyCycler™ Thermal Cycler. The reaction mixture was then diluted at 1:20 with nuclease-free water and used for real-time PCR amplification.
Target genes were selected based upon their role in apoptosis, mitochondrial oxidative respiration, oxidative stress, and lipid regulation. These genes included acetyl-CoA carboxylase (
acc), acetyl-CoA carboxylase alpha (
acc1), accetyl-CoA synthetase (
acs1), adipose triglyceride lipase (
atgl), acyl-coa dehydrogenase long chain (
acadl), caspase 3 (
casp3), catalase (
cat), carnitine Palmitoyltransferase 1 (
cpt1), carnitine palmitoyltransferase 2 (
cpt2), diacylglycerol o-acyltransferase 1 (
dgat1), diacylglycerol o-acyltransferase 2 (
dgat2), fas cell surface death receptor (
fas), hormone-sensitive lipase (
hsl), peroxisome proliferator activated receptor gamma (
pparg), pyruvate dehydrogenase kinase 1 (
pdk1), pyruvate dehydrogenase kinase 2 (
pdk2), pyruvate dehydrogenase kinase 4 (
pdk4), stearoyl-coa desaturase 1 (
scd1), superoxide dismutase 1 (
sod1), superoxide dismutase 2 (
sod2), and sterol regulatory element binding transcription factor 1 (
srebp-1c).
Supplemental Data Table S1 contains all the sequence information for target genes. The reference and target genes were measured using the CFX Connect Real-Time PCR Detection System (BioRad) using SsoFast™ EvaGreen® Supermix (BioRad, Hercules, CA, USA). Biological replicates (n = 4 per experimental group) were measured in duplicate. Two reference genes (ribosomal subunit 18 (
rps18) and beta-actin (
β-actin)) were used to normalize target expression. Normalized expression based upon the relative ∆∆Cq method was obtained for each target gene using CFX Manager™ software (v3.1) (baseline subtracted) [
31]. Real-time PCR data followed recommendations outlined in the MIQE guidelines [
32].