REVIEW
|
doi:10.20944/preprints201806.0036.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
varicella-zoster virus; latency; reactivation; sensory ganglia; VZV latency-associated transcript; open reading frame 63; RNA-sequencing; epigenetics; immunity
Online: 4 June 2018 (11:49:09 CEST)
REVIEW
|
doi:10.20944/preprints202408.1590.v1
Subject:
Medicine And Pharmacology,
Otolaryngology
Keywords:
head and neck cancer; liquid biopsy; ctDNA; squamous cell carcinoma; oropharyngeal carcinoma; nasopharyngeal carcinoma; genetic mutations; genomic sequencing; cancer biomarkers
Online: 21 August 2024 (17:03:39 CEST)
REVIEW
|
doi:10.20944/preprints202405.1276.v2
Subject:
Biology And Life Sciences,
Immunology And Microbiology
Keywords:
immune-mediated inflammatory diseases; single-cell sequencing; multi-tissue atlas; cross-tissue atlas; human cell atlas; integrative analysis; precision medicine
Online: 6 June 2024 (12:45:14 CEST)
DATA DESCRIPTOR
|
doi:10.20944/preprints202311.1869.v1
Subject:
Medicine And Pharmacology,
Epidemiology And Infectious Diseases
Keywords:
Acinetobacter baumannii; healthcare-associated infections; genomic epidemiology; whole genome sequencing; cgMLST; international clones of high risk; antibiotic resistance
Online: 29 November 2023 (10:59:38 CET)
ARTICLE
|
doi:10.20944/preprints202309.2039.v1
Subject:
Public Health And Healthcare,
Public Health And Health Services
Keywords:
newborn screening; genome sequencing; ethical; legal; social implications (ELSI); NBSTRN; public health; databases; online tools; Recommended Uniform Screening Panel (RUSP)
Online: 29 September 2023 (04:28:14 CEST)
ARTICLE
|
doi:10.20944/preprints202307.1116.v1
Subject:
Public Health And Healthcare,
Public, Environmental And Occupational Health
Keywords:
environmental stressors; pharmaceuticals; antibiotic resistance; selection pressure; public health; tolerant bacteria; environmental pollution; mutation; whole genome sequencing; single nucleotide polymorphisms
Online: 18 July 2023 (05:36:57 CEST)
ARTICLE
|
doi:10.20944/preprints202208.0338.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
migratory birds; Newcastle disease virus-GVII; poultry; phylogenetics; sequence-independent; sin-gle-primer amplification (SISPA); velogenic; whole genome sequencing (WGS)
Online: 18 August 2022 (10:40:10 CEST)
ARTICLE
|
doi:10.20944/preprints201811.0623.v1
Subject:
Biology And Life Sciences,
Plant Sciences
Keywords:
genomic selection; genomic prediction; genotyping by sequencing; pasmo resistance; pasmo severity; quantitative trait loci; single nucleotide polymorphism; Septoria linicola; flax
Online: 30 November 2018 (08:39:11 CET)
ARTICLE
|
doi:10.20944/preprints201708.0103.v1
Subject:
Medicine And Pharmacology,
Oncology And Oncogenics
Keywords:
stem cells; somatic mutations; cancer prevention; carcinogenesis; whole genome sequencing; stem cell division theory of cancer; bad luck of cancer
Online: 30 August 2017 (12:14:52 CEST)
ARTICLE
|
doi:10.20944/preprints201609.0080.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Anatolian Black; East Anatolian Red; South Anatolian Red; Turkish Grey; Holstein Friesian; Innate immunity; Next Generation Sequencing; TLR2; TLR4; TLR6
Online: 23 September 2016 (05:44:43 CEST)
ARTICLE
|
doi:10.20944/preprints202401.0728.v1
Subject:
Medicine And Pharmacology,
Epidemiology And Infectious Diseases
Keywords:
Hypermucoviscous1; Klebsiella pneumoniae2; Hypervirulent3; Mobile genetic elements4; capsule serotypes5; Virulence6; Whole genome sequencing7; sequence types8
Online: 10 January 2024 (03:51:05 CET)
ARTICLE
|
doi:10.20944/preprints202308.0332.v2
Subject:
Biology And Life Sciences,
Biology And Biotechnology
Keywords:
homologous recombination deficiency (HRD); biomarkers; ovarian cancer; DNA repair; BRCA1/2; poly (ADP–ribose) polymerase inhibitors (PARPi); next generation sequencing (NGS)
Online: 6 September 2023 (09:09:09 CEST)
COMMUNICATION
|
doi:10.20944/preprints202206.0374.v1
Subject:
Biology And Life Sciences,
Immunology And Microbiology
Keywords:
antimicrobial resistance; CTX-M-1; Enterobactericeae,; Escherichia coli; extended-spectrum β-lactamase; food safety; IncI1; next-generation sequencing; One Health; virulence
Online: 28 June 2022 (04:18:22 CEST)
ARTICLE
|
doi:10.20944/preprints202011.0640.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Arthroplasty; prosthetic joint replacement; prosthetic joint infection; systemic antibiotic prophylaxis; Antibiotics; chlorhexidine gluconate; coagulase-negative staphylococci; tuf gene sequencing; staphylome; microbiome
Online: 25 November 2020 (12:56:25 CET)
ARTICLE
|
doi:10.20944/preprints201803.0271.v1
Subject:
Biology And Life Sciences,
Plant Sciences
Keywords:
Idaeovirus; Blackcurrant leaf chlorosis associated virus; next-generation sequencing (NGS); bridge reads; abutting primers; RNase R digestion; circular RNA; concatenated RNA
Online: 30 March 2018 (11:40:46 CEST)
ARTICLE
|
doi:10.20944/preprints202409.1258.v1
Subject:
Medicine And Pharmacology,
Epidemiology And Infectious Diseases
Keywords:
sanger sequencing; spirochetemia; early localized Lyme disease; FlaB paralogs; SNP in FlaB gene; single Borrelia burgdorferi cell; platelet-rich plasma
Online: 17 September 2024 (08:10:09 CEST)
CASE REPORT
|
doi:10.20944/preprints202408.0010.v1
Subject:
Medicine And Pharmacology,
Obstetrics And Gynaecology
Keywords:
breast pathology; breast abscess; suppurative breast lesion; tuberculous mastitis; breast cancer; mastitis; idiopathic granulomatous mastitis; somatic mutations; pathogenic mutations; whole-exome sequencing
Online: 1 August 2024 (10:59:25 CEST)
ARTICLE
|
doi:10.20944/preprints202406.0327.v1
Subject:
Medicine And Pharmacology,
Other
Keywords:
severe COVID-19; severe outcome of SARS-CoV-2 infection; whole-genome sequencing; WGS; genetic susceptibility; rare variants; human rare genomic variants
Online: 6 June 2024 (07:30:51 CEST)
ARTICLE
|
doi:10.20944/preprints202405.1848.v1
Subject:
Biology And Life Sciences,
Virology
Keywords:
bioinformatics; HBV; HIV-1; HPV; hybrid capture NGS; insertional mutagenesis; next generation sequencing; oncovirus; virus taxonomy; virus database; viral mapping; virus integration
Online: 28 May 2024 (11:55:16 CEST)
ARTICLE
|
doi:10.20944/preprints202012.0252.v1
Subject:
Social Sciences,
Psychology
Keywords:
Fear extinction; Fear Conditioning; Medial Prefrontal Cortex; RNA sequencing; Differential Gene Expression; Electrophysiological Recordings; Excitatory Post-Synaptic Currents; Spinogenesis; Fear-related Disorders
Online: 10 December 2020 (11:38:50 CET)
ARTICLE
|
doi:10.20944/preprints202312.1576.v1
Subject:
Biology And Life Sciences,
Immunology And Microbiology
Keywords:
16S rRNA gene amplicon sequencing; adverse effects; bacterial contamination; fluorescent staining; masks; N95; personal protective equipment; risk; surgical mask
Online: 20 December 2023 (15:14:56 CET)
ARTICLE
|
doi:10.20944/preprints201903.0036.v1
Subject:
Medicine And Pharmacology,
Oncology And Oncogenics
Keywords:
breast neoplasms, ductal carcinoma in situ (DCIS), gene expression profiling, high-throughput nucleotide sequencing, infiltrating ductal carcinoma (IDC), paraffin embedding, sequence alignment, transcriptome
Online: 4 March 2019 (10:23:25 CET)
ARTICLE
|
doi:10.20944/preprints202402.0355.v1
Subject:
Medicine And Pharmacology,
Oncology And Oncogenics
Keywords:
Mn porphyrin clinical candidate, MnTnBuOE-2-PyP5+ (BMX-001, MnBuOE); Single-cell RNA sequencing; Tumor heterogeneity; Tumor microenvironment; Radiotherapy; Tumor radiosensitization
Online: 6 February 2024 (09:43:28 CET)
ARTICLE
|
doi:10.20944/preprints202201.0390.v1
Subject:
Medicine And Pharmacology,
Oncology And Oncogenics
Keywords:
non-small cell lung cancer (NSCLC); liquid biopsy; cell-free nucleic acid (cfNA); next generation sequencing (NGS); CNA (copy number amplifications); fusions, exon-skipping.
Online: 26 January 2022 (03:21:12 CET)
ARTICLE
|
doi:10.20944/preprints202307.1891.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
bioinformatics 1; hypervariable region 2; mitochondrial DNA 3; mitochondrial genomics 4; mitochondrial haplogroup 5; molecular anthropology 6; next generation sequencing 7; oncogenetics 8; phylogeography 9
Online: 27 July 2023 (09:29:37 CEST)
ARTICLE
|
doi:10.20944/preprints202204.0091.v1
Subject:
Medicine And Pharmacology,
Epidemiology And Infectious Diseases
Keywords:
SARS-CoV-2; SARS-CoV; RT-PCR; Sanger sequencing; RT-qPCR; receptor-binding domain (RBD); N-terminal domain (NTD); Omicron; multi-allelic SNPs; false-positive
Online: 12 April 2022 (03:57:29 CEST)
ARTICLE
|
doi:10.20944/preprints202311.1617.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Chromatin immunoprecipitation followed by sequencing; transcription factors binding sites prediction; cooperative binding of transcription factors; motifs conservation; classification of transcription factors; direct binding of transcription factors
Online: 27 November 2023 (07:26:54 CET)
REVIEW
|
doi:10.20944/preprints202201.0366.v1
Subject:
Medicine And Pharmacology,
Oncology And Oncogenics
Keywords:
cell-free DNA; liquid biopsy; cancer; next-generation sequencing (NGS); minimal residual disease; measurable residual disease; molecular residual disease (MRD); leukemia; lymphoma; myeloma; myeloproliferative neoplasms; myelodysplastic syndrome
Online: 25 January 2022 (08:13:24 CET)
ARTICLE
|
doi:10.20944/preprints202109.0415.v2
Subject:
Biology And Life Sciences,
Virology
Keywords:
Delta variant; Variants of concern; Variants of interest; SARS-CoV-2; Spike protein; Nested RT-PCR; Sanger sequencing; Amino acid mutations; ACE2 RBD; N-terminal domain (NTD)
Online: 2 November 2021 (10:40:46 CET)
ARTICLE
|
doi:10.20944/preprints201807.0397.v2
Subject:
Biology And Life Sciences,
Agricultural Science And Agronomy
Keywords:
flax; genome-wide association study (GWAS); selective sweep; genotyping by sequencing (GBS); bi-parental population; single nucleotide polymorphism (SNP); seed yield; plant height; maturity; fatty acid composition
Online: 3 August 2018 (15:34:24 CEST)
ARTICLE
|
doi:10.20944/preprints202007.0735.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
Variant of Unknown Significance (VUS); Single-Nucleotide Variant (SNV); Variant Effect Prediction (VEP); Stacked Ensemble of Supervised Deep Learners (SESDL); Next Generation Sequencing (NGS); Alternative Allele Frequency (AAF).
Online: 31 July 2020 (06:13:53 CEST)
ARTICLE
|
doi:10.20944/preprints202405.0998.v1
Subject:
Biology And Life Sciences,
Animal Science, Veterinary Science And Zoology
Keywords:
Escherichia coli; pigs; close human contacts; One Health; antibiotic resistance; whole genome sequencing; virulence factors; core genome MLST and hierarchical clustering; sequence type complex 10; South Africa
Online: 15 May 2024 (04:32:27 CEST)
ARTICLE
|
doi:10.20944/preprints202307.1155.v1
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
miRNA; piRNA; mRNA; CA125; progesterone receptor (PGR); new-generation sequencing (NGS); quantitative RT-PCR; serous ovarian carcinoma; borderline cystadenoma; benign cystadenoma; formalin-fixed paraffin-embedded (FFPE) blocks; blood plasma; cytoreduction
Online: 18 July 2023 (09:58:12 CEST)
ARTICLE
|
doi:10.20944/preprints202103.0658.v1
Subject:
Medicine And Pharmacology,
Immunology And Allergy
Keywords:
Pancreatic cancer; RNAseq; Humans; Weight loss; Prognosis; Rectus Abdominis; Carcinoma, Pancreatic Ductal; Adipose Tissue; Pancreatic Carcinoma; Pancreatic Neoplasms; Subcutaneous Fat; High-Throughput Nucleotide Sequencing; Body Composition; Muscles; Cachexia; Muscular Atrophy; Gene Expression
Online: 26 March 2021 (11:24:10 CET)
ARTICLE
|
doi:10.20944/preprints202007.0639.v2
Subject:
Biology And Life Sciences,
Biochemistry And Molecular Biology
Keywords:
chromatin immunoprecipitation with massively parallel sequencing, transcription factors binding sites prediction; cooperative binding of transcription factors; composite elements; motifs conservation; classification of transcription factors; ETS transcription factor family; direct binding of transcription factors; overlap of motifs
Online: 20 August 2020 (13:43:09 CEST)