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Gut Microbiome and Nutritional Profiles of Colon Cancer Patients Undergoing Chemotherapy: A Longitudinal Pilot Study
Claire Han
,Daniel Spakowicz
,Diane Von Ah
,Anne Noonan
,Pyter Leah
Posted: 22 December 2025
Sexual Dysfunction Among Melanoma Survivors: A Scoping Review of Current Evidence and Clinical Gaps
Omar Alqaisi
,Patricia Tai
,Bayan Abu Ali
,Lorent Sijarina
,Kurian Joseph
,Suhair Al-Ghabeesh
Sexual health is a fundamental component of quality of life that is frequently compromised in cancer patients. In melanoma care, these issues remain under addressed despite increasing survivorship. This scoping review aimed to map the current literature on sexual health concerns in melanoma patients. Following PRISMA-ScR guidelines, five databases were searched (2010–2025). Ten studies met the inclusion criteria, including cross-sectional, qualitative, and systematic reviews. Sexual dysfunction affected up to 52% of melanoma patients, with higher prevalence in men (68.9%) than women (41.3%). Contributing factors included visible scarring, hormonal imbalances (e.g., testosterone deficiency in 69% of men receiving immunotherapy), body image concerns, anxiety, and depression. Women were more affected by body image and recurrence anxiety, while men experienced higher rates of treatment-induced hypogonadism. Sexual health concerns are highly prevalent yet systematically overlooked in melanoma care. Gaps remain in longitudinal data, cultural considerations, and evidence-based interventions. Routine screening and integrated psychosocial support are critical to improving patient-centered survivorship care.
Sexual health is a fundamental component of quality of life that is frequently compromised in cancer patients. In melanoma care, these issues remain under addressed despite increasing survivorship. This scoping review aimed to map the current literature on sexual health concerns in melanoma patients. Following PRISMA-ScR guidelines, five databases were searched (2010–2025). Ten studies met the inclusion criteria, including cross-sectional, qualitative, and systematic reviews. Sexual dysfunction affected up to 52% of melanoma patients, with higher prevalence in men (68.9%) than women (41.3%). Contributing factors included visible scarring, hormonal imbalances (e.g., testosterone deficiency in 69% of men receiving immunotherapy), body image concerns, anxiety, and depression. Women were more affected by body image and recurrence anxiety, while men experienced higher rates of treatment-induced hypogonadism. Sexual health concerns are highly prevalent yet systematically overlooked in melanoma care. Gaps remain in longitudinal data, cultural considerations, and evidence-based interventions. Routine screening and integrated psychosocial support are critical to improving patient-centered survivorship care.
Posted: 22 December 2025
Optimal CeO₂ Doping for Synergistically Enhanced Mechanical, Tribological, and Thermal Properties in Zirconia Ceramics
Optimal CeO₂ Doping for Synergistically Enhanced Mechanical, Tribological, and Thermal Properties in Zirconia Ceramics
Feifan Chen
,Yongkang Liu
,Zhenye Tang
,Xianwen Zeng
,Yuwei Ye
,Hao Chen
Zirconium oxide (ZrO₂) ceramics are widely used in thermal barrier coatings and high temperature structural parts due to their excellent high temperature performance and thermal insulation characteristics. However, its high temperature phase transition, thermal expansion coefficient mismatch and thermal conductivity increase limit its further application. In order to improve the comprehensive properties of ZrO₂ ceramics, the effects of different CeO₂ doping levels (0-20 wt.%) on the microstructure, mechanical properties, tribological behavior and thermophysical properties of ZrO₂ ceramics were systematically investigated. The sample was prepared by a simple and efficient method of ball milling combined with pressure-free sintering, which has simple process and low cost, and was conducive to achieving the uniformity of composition and controllable microstructure. The results showed that 15 wt.% CeO₂ was the optimal doping concentration. At this time, the density of the material was the highest, and the hardness was 310 HV₁, which was 27.64% higher than that of the undoped sample. The friction coefficient and wear rate were reduced to 0.205 and 1.81×10⁻³ mm³/N·m, respectively, showing the optimal wear resistance. At 1200 °C, the thermal expansion coefficient decreased by 72.21%, and the thermal conductivity decreased to 0.612 W/(m·K). The improved performance was mainly attributed to the solid solution enhancement of Ce⁴⁺, grain refinement and phonon scattering effect of enhanced oxygen vacancy. This study provided an important basis for optimizing the comprehensive properties of ZrO₂ ceramics by component design.
Zirconium oxide (ZrO₂) ceramics are widely used in thermal barrier coatings and high temperature structural parts due to their excellent high temperature performance and thermal insulation characteristics. However, its high temperature phase transition, thermal expansion coefficient mismatch and thermal conductivity increase limit its further application. In order to improve the comprehensive properties of ZrO₂ ceramics, the effects of different CeO₂ doping levels (0-20 wt.%) on the microstructure, mechanical properties, tribological behavior and thermophysical properties of ZrO₂ ceramics were systematically investigated. The sample was prepared by a simple and efficient method of ball milling combined with pressure-free sintering, which has simple process and low cost, and was conducive to achieving the uniformity of composition and controllable microstructure. The results showed that 15 wt.% CeO₂ was the optimal doping concentration. At this time, the density of the material was the highest, and the hardness was 310 HV₁, which was 27.64% higher than that of the undoped sample. The friction coefficient and wear rate were reduced to 0.205 and 1.81×10⁻³ mm³/N·m, respectively, showing the optimal wear resistance. At 1200 °C, the thermal expansion coefficient decreased by 72.21%, and the thermal conductivity decreased to 0.612 W/(m·K). The improved performance was mainly attributed to the solid solution enhancement of Ce⁴⁺, grain refinement and phonon scattering effect of enhanced oxygen vacancy. This study provided an important basis for optimizing the comprehensive properties of ZrO₂ ceramics by component design.
Posted: 22 December 2025
Co-Infection and Phylogenetic Evolution of Chicken Infectious Anemia Virus in Marek’s Disease Tumour-Bearing Flocks in Central China During 2020-2023
Fang Han
,Bin Shi
,Lu-Ping Zheng
,Man Teng
,Shu-Ge Wang
,Wen-Kai Zhang
,Zhi-Feng Peng
,Qin Luo
,Gui-Xi Li
,Yong-Xu Zhao
+4 authors
The avian immunosuppressive and neoplastic diseases are great threats to the poultry industry causing huge economic losses worldwide. Most recently, the emerging hypervirulent variants of Marek’s disease virus (HV-MDV), partially co-infected with avian leukosis virus (ALV) and/or reticuloendotheliosis virus (REV), have been identified as the key driver of tumour outbreaks in vaccinated chicken flocks, but the role of chicken infectious anaemia virus (CIAV) remains unclear. Herein, we have investigated the prevalence and co-infection of CIAV in 72 clinical tumour-bearing flocks collected from central China during 2020-2023, which has shown a CIAV positivity rate of 59.7% (43/72). Notably, the incidence of CIAV mono-infection increased significantly from 0% (0/30) in 2020-2021 to 26.2% (11/42) in 2022-2023, whereas CIAV+MDV co-infection decreased from 66.7% (20/30) to 28.6% (12/42). A total of 20 viral genomes of epidemic CIAV isolates from diverse sources were obtained, and the phylogenetic analysis including 91 reference isolates were clustered into four major lineages (A–D), with a clade C further subdivided into subclades C1 and C2. Clade C1 consisted predominantly of Asian isolates, with 88.5% (46/52) of the isolates originated from mainland China. Among the 20 new isolates, 17 were clustered in subclade C1, two in C2, and one in B. The VP1 gene phylogeny showed a topology largely consistent with that of the whole-genome analysis. Moreover, all newly characterized isolates contained glutamine (Q) at VP1 residue 394, a molecular marker associated with high pathogenicity. Collectively, our data suggest that prevalent HV-MDV variants together with CIAV co-infections are the primary drivers of the ongoing tumour outbreaks in Chinese poultry flocks. Furthermore, the increased pathogenicity observed in CIAV mono-infections, likely resulting from an independently evolving lineage among circulating Chinese strains, will pose a significant challenge for future control of disease.
The avian immunosuppressive and neoplastic diseases are great threats to the poultry industry causing huge economic losses worldwide. Most recently, the emerging hypervirulent variants of Marek’s disease virus (HV-MDV), partially co-infected with avian leukosis virus (ALV) and/or reticuloendotheliosis virus (REV), have been identified as the key driver of tumour outbreaks in vaccinated chicken flocks, but the role of chicken infectious anaemia virus (CIAV) remains unclear. Herein, we have investigated the prevalence and co-infection of CIAV in 72 clinical tumour-bearing flocks collected from central China during 2020-2023, which has shown a CIAV positivity rate of 59.7% (43/72). Notably, the incidence of CIAV mono-infection increased significantly from 0% (0/30) in 2020-2021 to 26.2% (11/42) in 2022-2023, whereas CIAV+MDV co-infection decreased from 66.7% (20/30) to 28.6% (12/42). A total of 20 viral genomes of epidemic CIAV isolates from diverse sources were obtained, and the phylogenetic analysis including 91 reference isolates were clustered into four major lineages (A–D), with a clade C further subdivided into subclades C1 and C2. Clade C1 consisted predominantly of Asian isolates, with 88.5% (46/52) of the isolates originated from mainland China. Among the 20 new isolates, 17 were clustered in subclade C1, two in C2, and one in B. The VP1 gene phylogeny showed a topology largely consistent with that of the whole-genome analysis. Moreover, all newly characterized isolates contained glutamine (Q) at VP1 residue 394, a molecular marker associated with high pathogenicity. Collectively, our data suggest that prevalent HV-MDV variants together with CIAV co-infections are the primary drivers of the ongoing tumour outbreaks in Chinese poultry flocks. Furthermore, the increased pathogenicity observed in CIAV mono-infections, likely resulting from an independently evolving lineage among circulating Chinese strains, will pose a significant challenge for future control of disease.
Posted: 22 December 2025
The Relationship Between Mental Health Disorders and Climate Factors Among Residents of Kampala District Attending Butabika National Referral Mental Hospital, Uganda
Oliver Akello
,Rebecca Nuwamatsiko
,Lynn Atuyambe
,John B Isunju
Posted: 22 December 2025
Antimicrobial Use and Resistance: Knowledge, Attitudes, and Practices of Broiler Farmers in Mzimba, Malawi
Abel Compbel Chipembo
,Goliath Eneya Zulu
,Precius Mastala
,Sam Mvula
,Thomas S.G Malinki
,Wilson Friday
,Martin Kalumbi
,Alberto Pondja
,Janelisa Musaya
,Belisário Moiane
+1 authors
Background: There is wide use of antimicrobials in chicken production worldwide. However, little is known about the factors that motivate poultry farmers towards antimicrobial use (AMU), and awareness of antimicrobial resistance (AMR), and how such factors can lead to AMR in bacterial poultry pathogens, particularly those isolated from chicken meat. Objective: To evaluate knowledge, attitudes, and practices about the use of antimicrobials among chicken farmers in the Mzimba district, Malawi. Materials and methods: A cross-sectional study was conducted involving 89 chicken farmers in Mzimba to assess their knowledge, attitudes, and practices (KAP) related to AMU and AMR. Data analysis was performed using STATA version 15, applying linear regression and Pearson correlations analysis for KAP scores. Results: Among the chicken farmers, 46.1%, 43.8%, and 42.7% demonstrated good knowledge, attitudes, and practices, respectively. Training on AMU and AMR was significantly associated with knowledge (p = 0.002) and practices (p = 0.02). There was a weak relationship among knowledge, attitudes, and practices scores with p-values of 0.2, 0.07, and -0.05. Gaps existed in coordination between veterinarians and farmers and all farmers (100%) were accessing antimicrobials from veterinary shops without consulting veterinarians. Farmers were not aware of policies related to AMR and AMU. Conclusion: chicken farmers exhibited low KAP levels on AMU and AMR. This situation constitutes an emergency of AMR and therefore underscores for policy development targeted enforce regulations, and improve KAP through trainings programs on AMU, AMR, and importance of consulting veterinarians in chicken production.
Background: There is wide use of antimicrobials in chicken production worldwide. However, little is known about the factors that motivate poultry farmers towards antimicrobial use (AMU), and awareness of antimicrobial resistance (AMR), and how such factors can lead to AMR in bacterial poultry pathogens, particularly those isolated from chicken meat. Objective: To evaluate knowledge, attitudes, and practices about the use of antimicrobials among chicken farmers in the Mzimba district, Malawi. Materials and methods: A cross-sectional study was conducted involving 89 chicken farmers in Mzimba to assess their knowledge, attitudes, and practices (KAP) related to AMU and AMR. Data analysis was performed using STATA version 15, applying linear regression and Pearson correlations analysis for KAP scores. Results: Among the chicken farmers, 46.1%, 43.8%, and 42.7% demonstrated good knowledge, attitudes, and practices, respectively. Training on AMU and AMR was significantly associated with knowledge (p = 0.002) and practices (p = 0.02). There was a weak relationship among knowledge, attitudes, and practices scores with p-values of 0.2, 0.07, and -0.05. Gaps existed in coordination between veterinarians and farmers and all farmers (100%) were accessing antimicrobials from veterinary shops without consulting veterinarians. Farmers were not aware of policies related to AMR and AMU. Conclusion: chicken farmers exhibited low KAP levels on AMU and AMR. This situation constitutes an emergency of AMR and therefore underscores for policy development targeted enforce regulations, and improve KAP through trainings programs on AMU, AMR, and importance of consulting veterinarians in chicken production.
Posted: 22 December 2025
Cognitive Effects of Taurine and Related Sulphur-Containing Amino Acids: A Systematic Review of Human Trials and Considerations for Plant-Based Dietary Transitions
Jack A Moore
,Alecia L. Cousins
,Rebecca MJ Taylor
,Amy R Griffiths
,Hayley A Young
Posted: 22 December 2025
An Interesting Equation Leads to the MOND but Does not Rule out the Existence of Dark Matter
Jinwen Hu
Posted: 22 December 2025
The Potential of Hydrogen Fuel Cell Buses for Sustainable Urban Transportation: A Life Cycle Perspective
Camila Padovan
,Ana Carolina Angelo
,Marcio D'Agosto
,Pedro Carneiro¹
Posted: 22 December 2025
β₃-Adrenergic Signaling in Heart Failure: A Stage-Dependent Double-Edged Sword
Antoine Fakhry AbdelMassih
,Mary Fons Fahmy
,Raghad Hashem Altelly
Posted: 22 December 2025
The Class Effects and National Security Tensions of the Criminal Record Sealing System: A Critique of Professor Yin Bo's Related Discourse at China University of Political Science and Law Based on Marxism and Xi Jinping Thought on the Rule of Law
Wei Meng
Posted: 22 December 2025
Macro-Financial Blind Spots in Emerging Markets: Non-Bank Intermediation, Funding Liquidity, and the Persistence of Global Shock Transmission
Gustavo Pessoa
Despite significant advances in bank regulation and the widespread adoption of macroprudential frameworks, emerging market economies remain persistently vulnerable to global financial shocks. Episodes such as the Global Financial Crisis, the COVID-19 market turmoil, and recent monetary tightening cycles reveal that financial stress originating in core markets continues to transmit rapidly and forcefully to emerging economies. This paper argues that such vulnerability reflects structural features of contemporary financial systems rather than deficiencies in domestic banking regulation alone. Adopting a conceptual and analytical approach, the article develops an integrated framework of macro-financial blind spots that links global financial cycles, non-bank financial intermediation, and regulatory fragmentation. The analysis highlights how funding liquidity, collateral valuation, margin dynamics, and market-based leverage amplify global shocks through channels that lie largely outside traditional, bank-centric macroprudential frameworks. As market-based finance expands, systemic risk increasingly originates in activities rather than institutions, limiting the effectiveness of entity-based regulation and reinforcing emerging markets’ role as price-takers in global portfolios. The paper contributes to the literature by synthesizing insights from macroprudential policy, market liquidity, and non-bank finance to explain the persistence of emerging market vulnerability in an era of globalized funding. It further derives policy implications for macro-financial governance, emphasizing the need for system-wide, activity-based approaches, improved data and transparency, and stronger domestic and international regulatory coordination. These findings are relevant for policymakers seeking to reconcile financial integration with systemic resilience in emerging markets.
Despite significant advances in bank regulation and the widespread adoption of macroprudential frameworks, emerging market economies remain persistently vulnerable to global financial shocks. Episodes such as the Global Financial Crisis, the COVID-19 market turmoil, and recent monetary tightening cycles reveal that financial stress originating in core markets continues to transmit rapidly and forcefully to emerging economies. This paper argues that such vulnerability reflects structural features of contemporary financial systems rather than deficiencies in domestic banking regulation alone. Adopting a conceptual and analytical approach, the article develops an integrated framework of macro-financial blind spots that links global financial cycles, non-bank financial intermediation, and regulatory fragmentation. The analysis highlights how funding liquidity, collateral valuation, margin dynamics, and market-based leverage amplify global shocks through channels that lie largely outside traditional, bank-centric macroprudential frameworks. As market-based finance expands, systemic risk increasingly originates in activities rather than institutions, limiting the effectiveness of entity-based regulation and reinforcing emerging markets’ role as price-takers in global portfolios. The paper contributes to the literature by synthesizing insights from macroprudential policy, market liquidity, and non-bank finance to explain the persistence of emerging market vulnerability in an era of globalized funding. It further derives policy implications for macro-financial governance, emphasizing the need for system-wide, activity-based approaches, improved data and transparency, and stronger domestic and international regulatory coordination. These findings are relevant for policymakers seeking to reconcile financial integration with systemic resilience in emerging markets.
Posted: 22 December 2025
Recent Advances in Reversible Thermochromic Materials for Smart Textiles: A Review
Qiucheng Lu
,Xiaohui Zhao
,Wang Xu
,Ziqiang Bi
,Hailin Li
,Yuqing Liu
Posted: 22 December 2025
An Oral Ketamine-Like Approach to Treatment-Resistant Obsessive-Compulsive Disorder—A Review of Mechanism, Clinical Experience, and Future Directions
Ngo Cheung
Posted: 22 December 2025
Viscoelastic Counterspace: Natural Induction as the Micro-Physics of the Extrinsic Constitutive Law
Henry Arellano-Peña
Posted: 22 December 2025
Digital Sustainable Marketing and Green Consumer Choices: The Mediating Roles of Green Perceived Value and Green Skepticism in Saudi Arabia
Amr Noureldin
,Fatma Alkhofaily
Posted: 22 December 2025
Consciousness as 4-Manifold Painlevé V Dynamics: From Quantum Topology to Classical Gamma Oscillations
Michel Planat
Posted: 22 December 2025
New SPRi Biosensors for Simultaneous Detection of Tau Protein Isoforms—The Importance of The ptau181/Total Tau Ratio in Alzheimer's Disease
Zuzanna Zielinska
,Ewa Gorodkiewicz
Tau protein is a nonspecific marker of neurodegeneration, and its phosphorylated form, ptau-181, is specifically associated with Alzheimer's disease (AD). Calculating the ratio of the phosphorylated form to total tau protein can help distinguish AD from other tauopathies or neurodegeneration, as well as reduce the impact of individual differences in total tau protein levels. This also allows for monitoring and comparing the dynamics of changes within the same patient. For this purpose, two SPRi biosensors were constructed, sensitive to the proteins described: total tau and ptau-181 for plasma determinations. The use of these biosensors requires prior sensor validation, during which specific parameters of the analytical method are established. A study of the optimal concentration of the receptor layer in which particular antibodies were immobilized found that the optimal concentration for total tau protein determinations was 1000 ng/mL. For ptau-181, it was 90 ng/mL. Biosensor layer formation was confirmed by analysis over a wide angle range, which enabled the generation of SPR curves. The dynamic range of the sensors is 1–50 pg/mL for total tau and 1–100 pg/mL for ptau-181. The limits of detection are 0.18 pg/mL and 0.037 pg/mL, respectively. Low standard deviation (SD) and coefficient of variation (CV) values indicate good precision and accuracy of the results obtained using the SPRi biosensors. Specificity testing confirmed that no interferents influenced the assay. The method is therefore suitable for researching biological materials, such as blood plasma. Proteins were thus measured in the blood plasma of AD patients and controls. Statistical analysis revealed significant differences in the concentrations of tau and ptau-181 protein in both groups. The calculated ptau/total tau ratio for both sample groups also demonstrated high statistical significance. This suggests that a high ratio may be characteristic of AD. However, more extensive analysis is needed to obtain cutoff values. The ROC curves indicate that both biosensors have good diagnostic utility, with lower specificity for total tau.
Tau protein is a nonspecific marker of neurodegeneration, and its phosphorylated form, ptau-181, is specifically associated with Alzheimer's disease (AD). Calculating the ratio of the phosphorylated form to total tau protein can help distinguish AD from other tauopathies or neurodegeneration, as well as reduce the impact of individual differences in total tau protein levels. This also allows for monitoring and comparing the dynamics of changes within the same patient. For this purpose, two SPRi biosensors were constructed, sensitive to the proteins described: total tau and ptau-181 for plasma determinations. The use of these biosensors requires prior sensor validation, during which specific parameters of the analytical method are established. A study of the optimal concentration of the receptor layer in which particular antibodies were immobilized found that the optimal concentration for total tau protein determinations was 1000 ng/mL. For ptau-181, it was 90 ng/mL. Biosensor layer formation was confirmed by analysis over a wide angle range, which enabled the generation of SPR curves. The dynamic range of the sensors is 1–50 pg/mL for total tau and 1–100 pg/mL for ptau-181. The limits of detection are 0.18 pg/mL and 0.037 pg/mL, respectively. Low standard deviation (SD) and coefficient of variation (CV) values indicate good precision and accuracy of the results obtained using the SPRi biosensors. Specificity testing confirmed that no interferents influenced the assay. The method is therefore suitable for researching biological materials, such as blood plasma. Proteins were thus measured in the blood plasma of AD patients and controls. Statistical analysis revealed significant differences in the concentrations of tau and ptau-181 protein in both groups. The calculated ptau/total tau ratio for both sample groups also demonstrated high statistical significance. This suggests that a high ratio may be characteristic of AD. However, more extensive analysis is needed to obtain cutoff values. The ROC curves indicate that both biosensors have good diagnostic utility, with lower specificity for total tau.
Posted: 22 December 2025
Twisting Paths: The Paradox of Fiber Branching in Muscle Regeneration
Leonit Kiriaev
,Kathryn N. North
,Stewart I. Head
,Peter J. Houweling
Posted: 22 December 2025
Rapid Phylogenomic Analysis of Thousands Outbreak‐Causing Viral Genomes Using Covary
Marvin I. De los Santos
Rapid phylogenomic analysis is essential for outbreak surveillance and large-scale viral comparative genomics, yet conventional alignment-based workflows remain computationally intensive and difficult to deploy at scale. Covary is a computational framework designed for large-scale biological sequence analysis. It is a translation-aware, alignment-free machine learning framework that encodes genomic information into biologically informed vector representations, enabling efficient genome-scale comparison without multiple sequence alignment (MSA). Here, Covary was applied to thousands-scale analysis of outbreak-causing viral genomes to assess its scalability and biological resolution. A total of 4,000 complete genomes of SARS-CoV-2, dengue virus, measles virus, and alphainfluenza virus were retrieved from the NCBI Viral Genomes Resource, of which 3,831 passed quality filtering and were analyzed using Covary. Results showed that Covary rapidly processed all genomes and consistently grouped sequences according to expected taxonomic assignments and known ingroup structure, including SARS-CoV-2 Pango lineages, dengue virus subtypes, measles virus geographic origin, and alphainfluenza virus clades. Covary completed the analysis in 45 minutes on free-tier Google Colab, inferring genome-wide relationships using modest computational resources. These results demonstrate that Covary enables rapid, alignment-free phylogenomic analysis of thousands of outbreak-causing viral genomes without requiring advanced computational infrastructure. In conclusion, Covary represents a scalable, deploy-ready machine learning pipeline for genome-informed outbreak surveillance and monitoring systems.
Rapid phylogenomic analysis is essential for outbreak surveillance and large-scale viral comparative genomics, yet conventional alignment-based workflows remain computationally intensive and difficult to deploy at scale. Covary is a computational framework designed for large-scale biological sequence analysis. It is a translation-aware, alignment-free machine learning framework that encodes genomic information into biologically informed vector representations, enabling efficient genome-scale comparison without multiple sequence alignment (MSA). Here, Covary was applied to thousands-scale analysis of outbreak-causing viral genomes to assess its scalability and biological resolution. A total of 4,000 complete genomes of SARS-CoV-2, dengue virus, measles virus, and alphainfluenza virus were retrieved from the NCBI Viral Genomes Resource, of which 3,831 passed quality filtering and were analyzed using Covary. Results showed that Covary rapidly processed all genomes and consistently grouped sequences according to expected taxonomic assignments and known ingroup structure, including SARS-CoV-2 Pango lineages, dengue virus subtypes, measles virus geographic origin, and alphainfluenza virus clades. Covary completed the analysis in 45 minutes on free-tier Google Colab, inferring genome-wide relationships using modest computational resources. These results demonstrate that Covary enables rapid, alignment-free phylogenomic analysis of thousands of outbreak-causing viral genomes without requiring advanced computational infrastructure. In conclusion, Covary represents a scalable, deploy-ready machine learning pipeline for genome-informed outbreak surveillance and monitoring systems.
Posted: 22 December 2025
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