Fluxgate magnetometers require calibration methods appropriate to their application levels and particularities; however the development of fully controlled calibration procedures presents a particular challenge regarding the inevitable influence of the local geomagnetic field and other external interferences when a laboratory with magnetically shielded walls is not available. In that context, we discussed the development of an automated calibration method for fluxgate magnetometers, considering those limitations in time and space, and avoiding some of the problems commonly found in other proposed solutions for the same challenge. For this task, we designed and built a new set of high level procedures, electronic systems and software, which perform active testing and automated calibration of fluxgate magnetometers, considering some resource constraints and employing instruments commonly found in electronic calibration laboratories.