This paper addresses the alliance route network design problem considering uncertainty of unit transportation cost. An alliance route network is constructed based on the hub-and-spoke (HS) network , in which airlines can achieve inter-area passenger transport through their international gateways. The design problem is formulated with a robust model containing a set of uncertain cost parameters. The model is established based on the three-subscript model of the HS network. A case study collected from real-world data is used to test the proposed model. The results show that the robust solution can reduce the impact of cost uncertainty.