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Synthesis of Nitrogen-Doped Biomass-Based Activated Carbon Supported Nickel Nanoparticles for Hydrazine Oxidation
Virginija Ulevičienė,
Aldona Balčiūnaitė,
Daina Upskuvienė,
Ance Plavniece,
Aleksandrs Volperts,
Galina Dobele,
Aivars Zhurinsh,
Gediminas Niaura,
Loreta Tamašauskaitė-Tamašiūnaitė,
Eugenijus Norkus
Posted: 10 March 2025
Evaluating the Predictive Capability of Radiomics Features of Perirenal Fat in Enhanced CT Images for Staging, and Grading of UTUC Tumours Using Machine Learning
Abdulrahman Nasser M Al Mopti,
Abdulsalam Alqahtani,
Ali H. D. Alshehri,
Chunhui Li,
Ghulam Nabi
Posted: 10 March 2025
Three-Dimensional Structural Heteromorphs of Mating-Type Proteins in Hirsutella sinensis and the Natural Cordyceps sinensis Insect-Fungal Complex
Xiu-Zhang Li,
Yu-Ling Li,
Jia-Shi Zhu
The MAT1-1-1 and MAT1-2-1 proteins are essential for the sexual reproduction of Ophiocordyceps sinensis. Although Hirsutella sinensis has been postulated to be the sole-anamorph of O. sinensis and to undergo self-fertilization under homothallism or pseudohomothallism, little is known about the three-dimensional (3D) structures of the mating proteins in the natural Cordyceps sinensis insect-fungal complex, which is a valuable therapeutic agent in traditional Chinese medicine. However, the alternative splicing and differential occurrence and translation of the MAT1-1-1 and MAT1-2-1 genes have been revealed in H. sinensis, negating the self-fertilization hypothesis but rather suggesting the occurrence of self-sterility under heterothallic or hybrid outcrossing. In this study, the MAT1-1-1 and MAT1-2-1 proteins in 173 H. sinensis strains and wild-type C. sinensis isolates were clustered into 6 and 5 clades in the Bayesian clustering trees and belonged to 24 and 21 diverse AlphaFold-predicted 3D structural morphs, respectively. Over 3 quarters of the strains/isolates contained either MAT1-1-1 or MAT1-2-1 proteins but not both. The diversity of the heteromorphic 3D structures of the mating proteins suggested functional alterations of the proteins and provided additional evidence supporting the self-sterility hypothesis under heterothallism and hybridization for H. sinensis, Genotype #1 of the 17 genome-independent O. sinensis genotypes. The heteromorphic stereostructures and mutations of the MAT1-1-1 and MAT1-2-1 proteins in the wild-type C. sinensis isolates and natural C. sinensis insect-fungi complex suggest various sources of the mating proteins produced by two or more cooccurring heterospecific fungal species in natural C. sinensis that have been discovered in mycobiotic, molecular, metagenomic, and metatranscriptomic studies and may inspire future studies on the biochemistry of mating and pheromone-receptor proteins and the reproductive physiology of O. sinensis.
The MAT1-1-1 and MAT1-2-1 proteins are essential for the sexual reproduction of Ophiocordyceps sinensis. Although Hirsutella sinensis has been postulated to be the sole-anamorph of O. sinensis and to undergo self-fertilization under homothallism or pseudohomothallism, little is known about the three-dimensional (3D) structures of the mating proteins in the natural Cordyceps sinensis insect-fungal complex, which is a valuable therapeutic agent in traditional Chinese medicine. However, the alternative splicing and differential occurrence and translation of the MAT1-1-1 and MAT1-2-1 genes have been revealed in H. sinensis, negating the self-fertilization hypothesis but rather suggesting the occurrence of self-sterility under heterothallic or hybrid outcrossing. In this study, the MAT1-1-1 and MAT1-2-1 proteins in 173 H. sinensis strains and wild-type C. sinensis isolates were clustered into 6 and 5 clades in the Bayesian clustering trees and belonged to 24 and 21 diverse AlphaFold-predicted 3D structural morphs, respectively. Over 3 quarters of the strains/isolates contained either MAT1-1-1 or MAT1-2-1 proteins but not both. The diversity of the heteromorphic 3D structures of the mating proteins suggested functional alterations of the proteins and provided additional evidence supporting the self-sterility hypothesis under heterothallism and hybridization for H. sinensis, Genotype #1 of the 17 genome-independent O. sinensis genotypes. The heteromorphic stereostructures and mutations of the MAT1-1-1 and MAT1-2-1 proteins in the wild-type C. sinensis isolates and natural C. sinensis insect-fungi complex suggest various sources of the mating proteins produced by two or more cooccurring heterospecific fungal species in natural C. sinensis that have been discovered in mycobiotic, molecular, metagenomic, and metatranscriptomic studies and may inspire future studies on the biochemistry of mating and pheromone-receptor proteins and the reproductive physiology of O. sinensis.
Posted: 10 March 2025
The Reverse RGB Rule: A Color-Coded Approach for Simplified Achalasia Diagnosis via HRM (High-Resolution Manometry)
Mohammed Abdulrasak,
Sohail Hootak,
Mostafa Mohrag,
Ali Someili
Posted: 10 March 2025
Evaluating the Balancing Properties of Wind and Solar PV Production
Riho Meister,
Wahiba Yaïci,
Reza Moezzi,
Mohammad Gheibi,
Külli Hovi,
Andres Annuk
Posted: 10 March 2025
The Information-Processing Universe: A Hypothesis of Spacetime as a Processing Manifestation from a Hidden Information Dimension
Weiran Fang
Posted: 10 March 2025
Assessment of Saher System in Enhancing Traffic Control and Road Safety: Insights from Experts for Dammam, Saudi Arabia
Abdullatif Mohammed Alobaidallah,
Ali Alqahtany,
Khandoker M. Maniruzzaman
Posted: 10 March 2025
Improving Rural Healthcare in Mobile Clinics: Real-time, Live Data-entry into the EMR Using a Satellite Internet Connection
Daniel Jackson Smith,
Elizabeth Mizelle,
Nina Ali,
Valery Cepeda,
Tonya Pearson,
Kayla Crumbley,
Dayana Pimentel,
Simon Herrera Suarez,
Kenneth Mueller,
Quyen Phan
Posted: 10 March 2025
Flexible Surface Reflector Antenna for Small Satellites
Jin-Ho Roh
Posted: 10 March 2025
Mutagenesis of Intrinsically Disordered Domain Impacts Topoisomerase II⍺ Catalytic Activity
Jeong Won Chang,
Addison K. O'Brian,
Allison J. Thomas,
Mattalyn R. Hardin,
Brooke D. Latham,
Daniel Ngabonziza,
Lily G. Simpson,
Benjamin D. Wade,
Laura Kühnhenrich,
Nina M. Thompson
Human topoisomerase II⍺ and IIb regulate DNA topology and knots in chromosomes during crucial cellular processes making these enzymes common targets for anticancer drugs. However, selective inhibition of topoisomerase II⍺ (TOP2A) is desired to decrease adverse effects, which may be mediated by topoisomerase IIb (TOP2B). The main region of difference between the two isoforms is the intrinsically disordered C-terminal domain (CTD), which is being studied as a target for selective inhibition. Our previous work examined several regions within the CTD to determine whether those regions impact biochemical function. In this current study, we designed and constructed four TOP2A mutants with amino acid substitutions in the CTD, which were then assessed for impact on biochemical activity. V1482D exhibited increased levels of relaxation, while both V1482D and K1520I exhibited increased levels of decatenation. No major impact on DNA cleavage or binding were observed with any of the mutants. The isolated impact of the changes on relaxation and decatenation supports the concept that the CTD can affect one aspect of the enzyme’s function in an isolated manner, which was seen in our previous study. Taken together, these results suggest modification of specific positions within the CTD affects substrate selection. These results are mapped onto the CTD for consideration of potential regions to target for inhibition of TOP2A.
Human topoisomerase II⍺ and IIb regulate DNA topology and knots in chromosomes during crucial cellular processes making these enzymes common targets for anticancer drugs. However, selective inhibition of topoisomerase II⍺ (TOP2A) is desired to decrease adverse effects, which may be mediated by topoisomerase IIb (TOP2B). The main region of difference between the two isoforms is the intrinsically disordered C-terminal domain (CTD), which is being studied as a target for selective inhibition. Our previous work examined several regions within the CTD to determine whether those regions impact biochemical function. In this current study, we designed and constructed four TOP2A mutants with amino acid substitutions in the CTD, which were then assessed for impact on biochemical activity. V1482D exhibited increased levels of relaxation, while both V1482D and K1520I exhibited increased levels of decatenation. No major impact on DNA cleavage or binding were observed with any of the mutants. The isolated impact of the changes on relaxation and decatenation supports the concept that the CTD can affect one aspect of the enzyme’s function in an isolated manner, which was seen in our previous study. Taken together, these results suggest modification of specific positions within the CTD affects substrate selection. These results are mapped onto the CTD for consideration of potential regions to target for inhibition of TOP2A.
Posted: 10 March 2025
Differential Topological Analysis of Wolfram’s Elementary Cellular Automata
Arturo Tozzi
Wolfram’s Elementary Cellular Automata (ECA) serve as fundamental models for studying discrete dynamical systems, yet their classification remains challenging under traditional statistical and heuristic methods. By leveraging tools from algebraic topology, homotopy theory and differential geometry, we establish a formal connection between topological invariants and ECA’s structural properties and evolution. We analyse the role of Betti numbers, Euler characteristics, edge complexity and persistent homology in achieving robust separation of the four ECA classes. Additionally, we apply coarse proximity theory and assessed the applicability of Poincaré duality, Nash embedding and Seifert–van Kampen theorems to quantify large-scale connectivity patterns. We find that Class 1 automata exhibit simple, contractible topological spaces, indicating minimal structural complexity, while Class 2 automata exhibit periodic fluctuations in their topological features, reflecting their cyclic structure and repeating patterns. Class 3 automata exhibit a higher variance in their structural properties with persistent topological features forming and dissolving across scales, a signature of chaotic evolution. Class 4 automata exhibit statistically significant increases in higher-dimensional topological voids, suggesting the appearance of stable formations. Edge complexity and fractal dimension emergd as the strongest predictors of increasing computational and topological complexity, confirming that self-similarity and structural complexity play a crucial role in distinguishing cellular automata classes. Further, we address the critical distinction between Class 3 and Class 4 automata, which holds paramount importance in practical applications. Our approach establishes a mathematical framework for automaton classification by identifying emergent structures, with potential applications in computational physics, artificial intelligence and theoretical biology.
Wolfram’s Elementary Cellular Automata (ECA) serve as fundamental models for studying discrete dynamical systems, yet their classification remains challenging under traditional statistical and heuristic methods. By leveraging tools from algebraic topology, homotopy theory and differential geometry, we establish a formal connection between topological invariants and ECA’s structural properties and evolution. We analyse the role of Betti numbers, Euler characteristics, edge complexity and persistent homology in achieving robust separation of the four ECA classes. Additionally, we apply coarse proximity theory and assessed the applicability of Poincaré duality, Nash embedding and Seifert–van Kampen theorems to quantify large-scale connectivity patterns. We find that Class 1 automata exhibit simple, contractible topological spaces, indicating minimal structural complexity, while Class 2 automata exhibit periodic fluctuations in their topological features, reflecting their cyclic structure and repeating patterns. Class 3 automata exhibit a higher variance in their structural properties with persistent topological features forming and dissolving across scales, a signature of chaotic evolution. Class 4 automata exhibit statistically significant increases in higher-dimensional topological voids, suggesting the appearance of stable formations. Edge complexity and fractal dimension emergd as the strongest predictors of increasing computational and topological complexity, confirming that self-similarity and structural complexity play a crucial role in distinguishing cellular automata classes. Further, we address the critical distinction between Class 3 and Class 4 automata, which holds paramount importance in practical applications. Our approach establishes a mathematical framework for automaton classification by identifying emergent structures, with potential applications in computational physics, artificial intelligence and theoretical biology.
Posted: 10 March 2025
By the Moonlight Shadow: Examining the Acoustic Ecology of the European Nightjar (Caprimulgus europaeus) in Northern Greece Using Passive Acoustic Monitoring
Dimitrios Tsioutsiourigas,
Anastasia Rodiou,
Eleftherios Nalmpantis,
Anna Kyriakopoulou,
Tereza Petrusková,
Christos Astaras
Posted: 10 March 2025
Corneal Endothelial Changes after Phacoemulsification Cataract Surgery using the Eight-chop Technique in Diabetic Eyes
Tsuyoshi Sato
Objectives: To investigate corneal endothelial changes and intraocular pressure (IOP) after phacoemulsification using the eight-chop technique and intraoperative parameters in patients with diabetes. Methods: Eyes of patients with cataracts who underwent phacoemulsification were included in this study. Cataract surgery was performed using the eight-chop technique. The operative time, phaco time, aspiration time, cumulative dissipated energy, and volume of fluid used were measured. The best-corrected visual acuity, IOP, corneal endothelial cell density (CECD), central corneal thickness (CCT), coefficient of variation (CV), and percentage of hexagonal cells (PHC) were measured pre- and post-operatively. Results: Overall, 181 eyes of 138 patients with cataracts were evaluated. In the diabetes group, the CECD loss rates were 5.1%, 3.9%, and 2.1% at 7 weeks, 19 weeks, and 1 year post-operatively, respectively. In the control group, the CECD loss rates were 2.8%, 2.6%, and 1.2% at 7 weeks, 19 weeks, and 1 year postoperatively, respectively. Significant differences in the CV and PHC were observed preoperatively and postoperatively between the diabetes and control groups (p < 0.01 or p = 0.01, 0.02). Significant differences were also observed between CV and PHC preoperatively, 19 weeks, and 1 year postoperatively in the diabetes and control groups (p < 0.01). At 1 year postoperatively, IOP reduction rates were 8.0% and 11.2% in the diabetes and control groups, respectively. Conclusions: CECD loss in the eight-chop technique was minimal. The repair and healing mechanisms of the endothelium may have increased by phacoemulsification using the eight-chop technique postoperatively. The IOP reduction was maintained in both groups postoperatively.
Objectives: To investigate corneal endothelial changes and intraocular pressure (IOP) after phacoemulsification using the eight-chop technique and intraoperative parameters in patients with diabetes. Methods: Eyes of patients with cataracts who underwent phacoemulsification were included in this study. Cataract surgery was performed using the eight-chop technique. The operative time, phaco time, aspiration time, cumulative dissipated energy, and volume of fluid used were measured. The best-corrected visual acuity, IOP, corneal endothelial cell density (CECD), central corneal thickness (CCT), coefficient of variation (CV), and percentage of hexagonal cells (PHC) were measured pre- and post-operatively. Results: Overall, 181 eyes of 138 patients with cataracts were evaluated. In the diabetes group, the CECD loss rates were 5.1%, 3.9%, and 2.1% at 7 weeks, 19 weeks, and 1 year post-operatively, respectively. In the control group, the CECD loss rates were 2.8%, 2.6%, and 1.2% at 7 weeks, 19 weeks, and 1 year postoperatively, respectively. Significant differences in the CV and PHC were observed preoperatively and postoperatively between the diabetes and control groups (p < 0.01 or p = 0.01, 0.02). Significant differences were also observed between CV and PHC preoperatively, 19 weeks, and 1 year postoperatively in the diabetes and control groups (p < 0.01). At 1 year postoperatively, IOP reduction rates were 8.0% and 11.2% in the diabetes and control groups, respectively. Conclusions: CECD loss in the eight-chop technique was minimal. The repair and healing mechanisms of the endothelium may have increased by phacoemulsification using the eight-chop technique postoperatively. The IOP reduction was maintained in both groups postoperatively.
Posted: 10 March 2025
A Simple Scenario for Explaining Asymmetric Deformation Across the Altyn Tagh Fault in Northern Tibetan Plateau: Contributions from Multiple Faults
Yi Luo,
Hongbo Jiang,
Wanpeng Feng,
Yunfeng Tian,
Wenliang Jiang
Posted: 10 March 2025
Physiological Mechanism of AMF Regulating the Growth of Trifoliate Orange Under Low Temperature Stress
Changlin Li,
Yan Wang,
Qiaofeng Yang,
Fuyuan Su,
Chuanwu Yao,
Hua Zhang,
Zhonghua Yao,
Dejian Zhang,
Xian Pei
Posted: 10 March 2025
Complexity Analysis of Environmental Time Series
Holger Lange,
Michael Hauhs
Posted: 10 March 2025
Alien Mammals in the Afrotropical Region and Their Impact on the Vertebrate Biodiversity: A Review
Grzegorz Kopij
Posted: 10 March 2025
LOLATAO, an Artificial Intelligence-Based Virtual Assistant for Clinical Follow-Up of Atrial Fibrillation (AF) Patients on Oral Anticoagulant Therapy: (OAT): A Feasibility Study
Amparo Santamaria,
Cristina Antón Maldonado,
Beatriz Sánchez-Quiñones,
Nataly Ibarra Vega,
Pedro Gónzalez,
Rafael Carrasco
Posted: 10 March 2025
Robotic Rehabilitation for Neurological Conditions through Multilateral Shared Control Architecture
Srikar Annamraju,
Harris Nisar,
Anne Christine Horowitz,
Dusan Stipanovic
Posted: 10 March 2025
Neuro Fuzzy System to Predict Timely Harvest in Stevia Crops
Shanti Maryse Gutiérrez-Magaña,
Noel García-Díaz,
Leonel Soriano-Equigua,
Walter Mata-López,
Juan García-Virgen,
Jesús Emmanuel Brizuela-Ramírez
Agriculture is essential for food production and raw materials. A key aspect of this sector is harvest, the stage at which the commercial part of the plant is separated. Timely harvesting minimizes post-harvest losses, preserves product quality and optimizes production processes. Globally, a substantial amount of food is wasted, impacting food security and natural resources. To address this problem, an Adaptive Neuro-Fuzzy Inference System was developed to predict timely harvesting in crops. Stevia, a native plant from Brazil and Paraguay, with an annual production 100,000 to 200,000 tons and a market of 400 million dollars, is the focus of this study. The system considers soil pH, Brix Degrees and leaf colorimetry as inputs. The output is binary: 1 indicates timely harvest and 0 indicates no timely harvest. To assess its performance, Leave One Out Cross Validation was used, obtaining an r² of 0.99965 and a Residual Absolute Error of 0.00064305, demonstrating its accuracy and robustness. In addition, an interactive application that allows farmers to evaluate crop status and optimize decision making was developed.
Agriculture is essential for food production and raw materials. A key aspect of this sector is harvest, the stage at which the commercial part of the plant is separated. Timely harvesting minimizes post-harvest losses, preserves product quality and optimizes production processes. Globally, a substantial amount of food is wasted, impacting food security and natural resources. To address this problem, an Adaptive Neuro-Fuzzy Inference System was developed to predict timely harvesting in crops. Stevia, a native plant from Brazil and Paraguay, with an annual production 100,000 to 200,000 tons and a market of 400 million dollars, is the focus of this study. The system considers soil pH, Brix Degrees and leaf colorimetry as inputs. The output is binary: 1 indicates timely harvest and 0 indicates no timely harvest. To assess its performance, Leave One Out Cross Validation was used, obtaining an r² of 0.99965 and a Residual Absolute Error of 0.00064305, demonstrating its accuracy and robustness. In addition, an interactive application that allows farmers to evaluate crop status and optimize decision making was developed.
Posted: 10 March 2025
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