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This version is not peer-reviewed
Nucleotide position | Amino acid in BCMV SVK |
Amino acid in BCMV PV 0915 |
Protein of BCMV |
---|---|---|---|
829-831 | S | R | P1 |
832-834 | L | P | |
856-858 | E | K | |
862-864 | V | A | |
868-870 | L | S | |
871-873 | T | A | |
880-882 | K | R | |
883-885 | H | Q | |
895-897 | K | D | |
898-900 | A | S | |
904-906 | L | F | |
907-909 | Q | R | |
913-915 | K | R | |
919-921 | E | Q | |
958-960 | V | S | |
961-963 | I | F | |
1156-1158 | L | V | |
1192-1194 | M | L | |
1198-1200 | L | H | |
1216-1218 | Q | K | |
1234-1236 | L | I | |
1237-1239 | P | N | |
1240-1242 | C | I | |
1243-1245 | F | Y | |
1246-1248 | T | K | |
1249-1251 | H | Q | |
1252-1254 | G | C | |
1255-1257 | D | L | |
1258-1260 | P | A | |
1261-1263 | V | A | |
1264-1266 | F | L | |
1267-1269 | G | C | |
1279-1281 | H | T | |
1282-1284 | L | Y | |
1285-1287 | L | R | |
1288-1290 | Y | H | |
1291-1293 | A | L | |
1297-1299 | S | N | |
1300-1302 | R | G | |
2581-2583 | V | M | Hc-pro |
2584-2586 | P | L | |
5755-5757 | L | F | CI |
8515-8517 | V | G | Nib |
9001-9003 | N | K | CP |
9139-9141 | R | K | |
9151-9153 | I | R | |
9169-9171 | E | V | |
9184-9186 | M | I | |
9190-9192 | I | N | |
9790-9792 | S | P |
Fragment | Primer | Sequence of primer (5´→ 3´) | Locations of primers (nucleotides) |
Product size (bp) |
---|---|---|---|---|
1. | F1 | AAAATAAAACAACTCATAAA | 1-20 | 826 |
R1 | ACTGAACAGCCCCCTTAGGT | 806-826 | ||
2. | F2 | TACCATCAAACAGCAACCTA | 792-811 | 718 |
R2 | TGAACTTATCACGCCATCCA | 1491-1510 | ||
3. | F3 | ATTCTCAGAGCCCTGAATTG | 1460-1479 | 727 |
R3 | ATTGGGGTTTTTCCTGATCC | 2168-2187 | ||
4. | F4 | CATTCCTTCAGAGGGTTACA | 2139-2158 | 759 |
R4 | TCTTTTGGGCTTGAAGATGC | 2879-2898 | ||
5. | F5 | CTCAAGAGCCCGACTAAGAG | 2378-2396 | 691 |
R5 | CTTGATGAGCTGTTCCAGCA | 3050-3069 | ||
6. | F6 | TGGATCCAAAGGGATCAAAG | 3010 - 3029 | 726 |
R6 | TGGGCATAACTGGCTTTTCT | 3717-3736 | ||
7. | F7 | CAAAGCTTTTGTGAAGCGAG | 3681-3700 | 906 |
R7 | GAATGCAATTGCCGAAGAAT | 4568-4587 | ||
8. | F8 | TCATCATTTTTGATGAGTGC | 4538-4557 | 651 |
R8 | AACGCTGCCTCTGTTGCTAT | 5170-5189 | ||
9. | F9 | GATGGGAGAACGATGCAGAT | 4864-4883 | 778 |
R9 | GGATCAGTGCTGAGCGTGTA | 5623-5642 | ||
10. | F10 | CACCAATACACCAGCCAATG | 5419-5438 | 622 |
R10 | ATCCAGCCACCACCAAGTAG | 6022-6041 | ||
11. | F11 | GGGTCTCAAAGGAAAGTGGG | 5958-5977 | 703 |
R11 | TCTCAACGGCCACCTCCTCA | 6642-6661 | ||
12. | F12 | GCGTATCAAGAGAAGTGAGG | 6609-6628 | 829 |
R12 | GCTTTGTCACCAACGCACTA | 7452-7471 | ||
13. | F13 | GGGCTCCCATTAGTTTCAGT | 7114-7133 | 653 |
R13 | TGCTGCTTTCAGGTTCAATG | 7748-7767 | ||
14. | F14 | TATGTCACGGATCCAGAAGA | 7717-7736 | 762 |
R14 | CCCACAAGTCCACTTCCTGT | 8460-8479 | ||
15. | F15 | ACAACAGTGGGCAACCTTCC | 8309-8328 | 541 |
R15 | TCTTGTCCTTCCCAGTGTCC | 8982-9001 | ||
16. | F16 | ATCTGTGCACCTACAATCAG | 8922-8941 | 763 |
R16 | TGCTGTTAACGTTGCTGAGG | 9666-9685 | ||
17. | F17 | CAATGGCACTTCACCAGATG | 9357-9376 | 693 |
R17 | AAACAAACATTGCCGTAGCT | 10031-10050 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Submitted:
25 April 2023
Posted:
25 April 2023
You are already at the latest version
This version is not peer-reviewed
Submitted:
25 April 2023
Posted:
25 April 2023
You are already at the latest version
Nucleotide position | Amino acid in BCMV SVK |
Amino acid in BCMV PV 0915 |
Protein of BCMV |
---|---|---|---|
829-831 | S | R | P1 |
832-834 | L | P | |
856-858 | E | K | |
862-864 | V | A | |
868-870 | L | S | |
871-873 | T | A | |
880-882 | K | R | |
883-885 | H | Q | |
895-897 | K | D | |
898-900 | A | S | |
904-906 | L | F | |
907-909 | Q | R | |
913-915 | K | R | |
919-921 | E | Q | |
958-960 | V | S | |
961-963 | I | F | |
1156-1158 | L | V | |
1192-1194 | M | L | |
1198-1200 | L | H | |
1216-1218 | Q | K | |
1234-1236 | L | I | |
1237-1239 | P | N | |
1240-1242 | C | I | |
1243-1245 | F | Y | |
1246-1248 | T | K | |
1249-1251 | H | Q | |
1252-1254 | G | C | |
1255-1257 | D | L | |
1258-1260 | P | A | |
1261-1263 | V | A | |
1264-1266 | F | L | |
1267-1269 | G | C | |
1279-1281 | H | T | |
1282-1284 | L | Y | |
1285-1287 | L | R | |
1288-1290 | Y | H | |
1291-1293 | A | L | |
1297-1299 | S | N | |
1300-1302 | R | G | |
2581-2583 | V | M | Hc-pro |
2584-2586 | P | L | |
5755-5757 | L | F | CI |
8515-8517 | V | G | Nib |
9001-9003 | N | K | CP |
9139-9141 | R | K | |
9151-9153 | I | R | |
9169-9171 | E | V | |
9184-9186 | M | I | |
9190-9192 | I | N | |
9790-9792 | S | P |
Fragment | Primer | Sequence of primer (5´→ 3´) | Locations of primers (nucleotides) |
Product size (bp) |
---|---|---|---|---|
1. | F1 | AAAATAAAACAACTCATAAA | 1-20 | 826 |
R1 | ACTGAACAGCCCCCTTAGGT | 806-826 | ||
2. | F2 | TACCATCAAACAGCAACCTA | 792-811 | 718 |
R2 | TGAACTTATCACGCCATCCA | 1491-1510 | ||
3. | F3 | ATTCTCAGAGCCCTGAATTG | 1460-1479 | 727 |
R3 | ATTGGGGTTTTTCCTGATCC | 2168-2187 | ||
4. | F4 | CATTCCTTCAGAGGGTTACA | 2139-2158 | 759 |
R4 | TCTTTTGGGCTTGAAGATGC | 2879-2898 | ||
5. | F5 | CTCAAGAGCCCGACTAAGAG | 2378-2396 | 691 |
R5 | CTTGATGAGCTGTTCCAGCA | 3050-3069 | ||
6. | F6 | TGGATCCAAAGGGATCAAAG | 3010 - 3029 | 726 |
R6 | TGGGCATAACTGGCTTTTCT | 3717-3736 | ||
7. | F7 | CAAAGCTTTTGTGAAGCGAG | 3681-3700 | 906 |
R7 | GAATGCAATTGCCGAAGAAT | 4568-4587 | ||
8. | F8 | TCATCATTTTTGATGAGTGC | 4538-4557 | 651 |
R8 | AACGCTGCCTCTGTTGCTAT | 5170-5189 | ||
9. | F9 | GATGGGAGAACGATGCAGAT | 4864-4883 | 778 |
R9 | GGATCAGTGCTGAGCGTGTA | 5623-5642 | ||
10. | F10 | CACCAATACACCAGCCAATG | 5419-5438 | 622 |
R10 | ATCCAGCCACCACCAAGTAG | 6022-6041 | ||
11. | F11 | GGGTCTCAAAGGAAAGTGGG | 5958-5977 | 703 |
R11 | TCTCAACGGCCACCTCCTCA | 6642-6661 | ||
12. | F12 | GCGTATCAAGAGAAGTGAGG | 6609-6628 | 829 |
R12 | GCTTTGTCACCAACGCACTA | 7452-7471 | ||
13. | F13 | GGGCTCCCATTAGTTTCAGT | 7114-7133 | 653 |
R13 | TGCTGCTTTCAGGTTCAATG | 7748-7767 | ||
14. | F14 | TATGTCACGGATCCAGAAGA | 7717-7736 | 762 |
R14 | CCCACAAGTCCACTTCCTGT | 8460-8479 | ||
15. | F15 | ACAACAGTGGGCAACCTTCC | 8309-8328 | 541 |
R15 | TCTTGTCCTTCCCAGTGTCC | 8982-9001 | ||
16. | F16 | ATCTGTGCACCTACAATCAG | 8922-8941 | 763 |
R16 | TGCTGTTAACGTTGCTGAGG | 9666-9685 | ||
17. | F17 | CAATGGCACTTCACCAGATG | 9357-9376 | 693 |
R17 | AAACAAACATTGCCGTAGCT | 10031-10050 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Miriam Brito
et al.
Viruses,
2012
Alina Puig
Agronomy,
2021
Tengzhi Xu
et al.
Viruses,
2022
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