3.1.5. The Synthetic Route of Compound 5
Compound
5 was synthesized as described in the literature[
52]. The mixture of SN38 (1.00 g, 2.50 mmol), (Boc)
2O (1.00 g, 4.50 mmol), pyridine (5 mL) and dichloromethane (50 mL) was stirred in a flask at room temperature. The reaction process was monitored using TLC. After the reaction was completed, the reaction solution was washed for three times with 1% HCl and water respectively. The resulting dichloromethane fraction was dried with anhydrous magnesium sulfate, filtered and concentrated in vacuum to obtain compound
5, a faint yellow solid, with the yield of 86%.
1H-NMR (300 MHz, Chloroform-d) δ 8.26 (d, J = 9.2 Hz, 1H), 7.91 (d, J = 2.5 Hz, 1H), 7.78 – 7.56 (m, 2H), 5.77 (d, J = 16.4 Hz, 1H), 5.44 – 5.16 (m, 3H), 3.84 (s, 1H), 3.18 (q, J = 7.6 Hz, 2H), 2.07 – 1.80 (m, 2H), 1.63 (s, 9H), 1.42 (t, J = 7.6 Hz, 3H), 1.05 (t, J = 7.4 Hz, 3H). Analytical data were in suitable accordance with the reported data[
52]. Judging from the signal of 1.57ppm in NMR, some Boc-OH existed in the product. Since Boc-OH had difficulty in reacting with compound
5 due to its high steric hindrance, compound
5 was directly used in the next step, without further purification.
3.1.6. The Synthetic Route of Compound 6 and 7
Compound
6 and
7 were synthesized by the method reported in the literature[
53].Compound
3 (355 mg, 1.2 mmol), compound
5 (518 mg, 1.0 mmol), EDCI (229 mg, 1.2 mmol) and DMAP (15 mg,0.12 mmol) were dissolved in 60 mL dichloromethane and stirred at room temperature. The reaction process was monitored using TLC. After the reaction was over, the reaction solution was washed for three times with 1% HCl and brine respectively. The resulting dichloromethane fraction was dried with anhydrous sodium sulfate, filtered and concentrated in vacuum to obtain compound
6, a faint yellow solid, with the yield of 73%. The resulted compound
6 without any purification and trifluoroacetic acid (9 mL) were dissolved 20 mL dichloromethane and stirred at 30°C to remove Boc protecting group. The reaction process was monitored using TLC. After the reaction was finished, the dichloromethane layer was washed with saturated NaHCO
3, brine and H
2O respectively. Then organic layer was dried with anhydrous sodium sulfate. After removal of dichloromethane in vacuo, compound
7 was obtained as a faint yellow solid with the yield of 82%. Compound
7 was directly used in the next step, without further purification.
1H-NMR (400 MHz, Chloroform-
d) δ 8.10 (s, 1H), 7.44 (d, J = 10.0 Hz, 1H), 7.38 (d, J = 2.4 Hz, 1H), 7.26 (s, 1H), 5.71 (d, J = 17.0 Hz, 2H), 5.39 (d, J = 17.0 Hz, 1H), 5.19 (s, 1H), 3.67 – 3.44 (m, 6H), 3.03 (m, 2H), 2.89 (m, 2H), 2.66 – 2.47 (m, 2H), 2.30 – 2.05 (m, 2H), 1.33 (t, J = 7.7 Hz, 3H), 1.01 (t, J = 7.5 Hz, 3H).
3.1.7. The Synthetic Route of Compound 8
To a solution of compound 4 (300 mg, 1.65 mmol) in t-BuOH/H2O mixture (2:1, 20 mL), sodium ascorbate (594 mg, 0.3 mmol) and CuSO4 (750 mg, 0.3 mmol) were added and stirred at room temperature and under argon atmosphere. When this mixture was yellow, compound 7 (268 mg, 0.4 mmol) was added and stirred at 40 °C. The reaction process was monitored by TLC. After the reaction was over, t-BuOH was removed in vacuum and the residue was lyophilized to prepare the crude compound 8. Then the crude compound 8 was purified using silica gel column chromatography. The final compound 8 was a faint yellow solid, with the yield of 52%. HPLC/Purity: 97.3% (tR = 7.056), 1H-NMR (400 MHz, DMSO-d6) δ 10.30 (s, 1H), 8.39 (s, 1H), 8.01 (s, 2H), 7.93 (d, J= 8.9 Hz, 1H), 7.77 (d, J = 9.0 Hz, 1H), 7.34 (t, J = 13.5 Hz, 2H), 7.10 (s, 1H), 5.50 (s, 2H), 5.24 (d, J = 17.0 Hz, 2H), 5.07 (m, 6H), 4.52 (q, J = 8.8 Hz, J = 14.7 Hz, 6H), 3.14 – 2.98 (m, 2H), 2.89 – 2.60 (m, 2H), 2.40 – 2.23 (m, 4H), 2.15 (m, 2H), 1.55 – 1.21 (m,15H), 1.20 – 1.07 (m, 13H), 0.95 (t, J = 7.1 Hz, 3H), 0.75 (t, J = 7.2 Hz, 18H); 13C NMR (101 MHz, DMSO-d6) δ 175.63 , 173.14 , 172.12 , 167.83 , 157.23 , 157.05 , 149.05 , 147.15 , 146.19 , 144.01 , 143.19 , 142.15 , 131.76 , 128.59 , 128.21 , 127.29 , 122.88 , 118.04 , 105.17 , 94.92 , 76.61 , 66.61 , 59.39 , 57.10 , 49.76 , 49.06 , 44.69 , 34.50 , 34.32 , 30.58 , 28.73 , 22.71 , 20.41 , 14.19 , 13.80 , 8.10; ESI-MS: m/z: calcd.1239.62 ([M+Na]+), 1255.59 ([M+K]+); found 1239.70 [M+Na]+, 1255.65 [M+K]+. The peak at 8.39 ppm (s, 1H) showed active hydrogen on amide bond. Due to hydrogen exchange, the integration of active hydrogen was insufficient. In addition, peak splitting of hydrogen seemed to be irregular perhaps due to the different 3D structures caused by these crowded repeating units.
3.1.8. The Synthetic Route of Compound 9
Compound 8 (1.22 g, 1 mmol), biotin (44.8 mg, 2 mmol), EDCI (0.488 g, 2.5 mmol) and DMAP (305 mg, 2.5 mmol) were dissolved in 10 mL DMF, and stirred overnight at 25 °C. After the reaction was completed, 100 mL ethyl acetate was added to obtain light yellow solution. The resulted solution was washed with brine for three times and dried with anhydrous sodium sulfate. After removal of ethyl acetate in vacuo, the crude product was obtained. Then the crude product was purified with silica gel column chromatography to obtain light yellow compound 9 with the yield of 43%. HPLC/Purity: 99.2% (tR = 13.359).1H-NMR (400 MHz, DMSO-d6) δ 8.40 (s, 1H), 8.23 (s, 1H), 8.21 (s, 1H), 8.13 (d, J = 9.1 Hz, 1H), 8.04 (s, 2H), 7.97 (d, J = 2.0 Hz, 1H), 7.80 (d, J = 4.8Hz, 1H), 7.60 (dt, J = 7.8 Hz, J = 2.3 Hz, 1H), 7.21 (d, J = 17.1 Hz, 1H), 6.51 (s, 1H), 6.41 (s, 1H), 5.52 (s, 2H), 5.37 – 5.16 (m, 4H), 5.10 (m, 5H), 4.98 -4.77 (m, 1H), 4.62 – 4.48 (m, 4H), 4.40 – 4.29 (m, 1H), 4.23 – 4.13 (m, 1H), 3.22 – 3.10 (m, 3H), 2.86 (dd, J = 12.5, 5.0 Hz, 2H), 2.70 (t, J = 7.2 Hz, 3H), 2.61 (d, J = 12.4 Hz, 1H), 2.51 (dt, J = 8.9, 3.8 Hz, 2H), 2.38 – 2.24 (m, 4H), 2.22 – 2.09 (m, 2H), 1.73-1.25 (m, 3H), 1.63 – 1.21(m, 17H), 1.20 – 1.06 (m, 12H), 1.01 – 0.89 (m, 3H), 0.83 – 0.63 (m, 18H). 13C NMR (101 MHz, DMSO-d6) δ 175.64 , 175.33 , 173.16 , 172.26 , 172.14 , 167.75 , 163.21 , 156.99 , 152.17 , 149.68 , 146.86 , 146.61 , 146.15 , 145.77 ,142.17 , 141.75 , 11.50 , 128.76 , 127.48 , 127.29 , 126.14 , 124.73 , 119.05 , 115.67 , 95.77, 76.56 , 66.64 , 62.89 , 61.51 , 59.70 , 59.40 , 57.12 , 55.82 , 49.87 , 49.10 ,44.71 , 34.51 , 34.47, 34.33, 33.85, 30.61, 28.50, 28.45, 24.78, 22.68, 20.43, 20.36, 14.10, 8.11; ESI-MS: m/z: calcd.1465.69 ([M+Na]+), 1481.67 ([M+K]+); found 1465.80 [M+Na]+, 1481.80 [M+K]+. The peaks at 8.40 ppm (s, 1H),8.23 (s, 1H) and 8.21 (s, 1H) showed active hydrogens on amide bonds. Due to hydrogen exchange, the integration of active hydrogens was insufficient. In addition, peak splitting of hydrogen seemed to be irregular perhaps due to the different 3D structures caused by these crowded repeating units.