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Submitted:
31 July 2023
Posted:
01 August 2023
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Gene | GenBank Accesion NO. | Primer Sequences (5’-3’) | Product Size (bp) |
---|---|---|---|
IGF1 | XM_005022553 | F: TGGCCTGTGTTTGCTTACCTR: GCCTCTGTCTCCACATACGA | 106 |
FGFR1 | MH359131 | F: TTTTCTCACGACCCTCTGCCR: CCTCAGTGTCGCTTCAGTCC | 86 |
ACSL3 | XM_005026417 | F: ACACTACCCCACTTTGCGATR: TCCACAAAGCAGGATGCGAA | 83 |
ACSL6 | XM_038186369 | F: AAGAGCCATTGCACAAACGGR:TTGGTTGCAGAATGAACGCC | 118 |
HSPA8 | XM_027444224.2 | F: AAGATGTCGAAGGGACCAGCR: CTGTGTCTGTGAAGGCGACA | 145 |
NR1H3 | NM_001310423 | F: ACGCCCCAAATGAGTAGCATR: AAGAGGTGTATGTGCGTGGG | 74 |
GAPDH | XM_038180584 | F: GGTTGTCTCCTGCGACTTCAR: TCCTTGGATGCCATGTGGAC | 165 |
Samples | Total clean reads | Total clean bases | unique match | multi-position match | Total mapped reads | Total unmapped reads |
---|---|---|---|---|---|---|
W20 sample 1 | 140085820 (100.00%) | 17575757205 (100.00%) | 104694517 (74.47%) | 24316000 (17.36%) | 129010517 (92.09%) | 11075303 (7.91%) |
W20 sample 2 | 152129548 (100.00%) | 19161362732 (100.00%) | 116442590 (76.54%) | 24961089 (16.41%) | 141403679 (92.95%) | 10725869 (7.05%) |
W20 sample 3 | 141677462 (100.00%) | 18577850816 (100.00%) | 113895963 (80.39%) | 16964272 (11.97%) | 130860235 (92.36%) | 10817227 (7.64%) |
W29 sample 1 | 132793402 (100.00%) | 17260232547 (100.00%) | 104917382 (79.01%) | 17256557 (13.00%) | 122173939 (92.00%) | 10619463 (8.00%) |
W29 sample 2 | 140933246 (100.00%) | 17798316784 (100.00%) | 112350813 (79.72%) | 18298590 (12.98%) | 130649403 (92.70%) | 10283843 (7.30%) |
W29 sample 3 | 118826918 (100.00%) | 15501757897 (100.00%) | 94655519 (79.66%) | 15227136 (12.81%) | 109882655 (92.47%) | 8944263 (7.53%) |
W320 sample 1 | 128259234 (100.00%) | 16516406070 (100.00%) | 101193254 (78.90%) | 15625664 (12.18%) | 116818918 (91.08%) | 11440316 (8.92%) |
W320 sample 2 | 118574410 (100.00%) | 15726318356 (100.00%) | 96473120 (81.36%) | 13380850 (11.28%) | 109853970 (92.65%) | 8720440 (7.35%) |
W320 sample 3 | 122680820 (100.00%) | 16005030545 (100.00%) | 97552630 (79.52%) | 16017790 (13.06%) | 113570420 (92.57%) | 9110400 (7.43%) |
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