Since ETS methods were relatively inefficient, and the resulting embryos yielded an insufficient amount of PrE lineages necessary for VE formation, Sozen et al. introduced an advanced approach where they incorporated XENCs into the ETS model, named ETX embryos[
8]. XENCs are derived from the PrE of blastocysts, expressing unique markers for extra-embryonic endoderm derivates, and can contribute exclusively to extra-embryonic endoderm lineages[
76]. By E5.0, the PrE undergoes segregation into two subpopulations, VE and parietal endoderm (PE), which play crucial roles in embryonic development, patterning, and maturation[
77]. The inclusion of XENCs not only results in a closer resemblance to the structure of a natural embryo but also enables the formation of an embryo-like structure without the need for an external extracellular matrix (ECM) supply, such as Matrigel. Moreover, this approach allows for the investigation of further developmental stages that were not able to be studied using the ETS model. To enhance efficiency and promote post-implantation development, several approaches have been suggested based on the co-culturing model using ETX embryos[
6,
9,
10,
11,
12,
13,
15]. These ETX-embryoids recapitulated the developmental events observed in E4.5-E7.0 natural embryo, including lumenogenesis for the formation of pro-amniotic cavity (PCX, E-CAD, and aPKC expression)[
6], asymmetry breaking (T/Brachyury expression), and PGC specification, as shown in ETS-embryos. However, the ETX-embryoids demonstrate more similar cell proportions to natural embryos and undergo further post-implantation development[
8].
Figure 3.
Synthetic embryos constructed with wild-type ESCs, TSCs, and XENCs, called ETX embryos or ETX embryoids. The self-organization and sorting of ESCs, TSCs, and XENCs are controlled by cadherin code, facilitating the formation of ETX embryoids. These ETX embryoids can develop to the stage comparable to natural embryos at E5.5-7.0. ESCs: Embryonic stem cells; TSCs: Trophoblast stem cells; XENCs: Extraembryonic endoderm cells.
4.1. ETX embryos using wild-type ESCs, TSCs, and XENCs
The primary distinction between the ETS-model and the ETX model lies in the presence of a layer of XENC-like cells that generate a VE-like structure that induces signals for lumenogenesis, A-P axis, and EMT [
78,
79]. On day 5 of culture with XENCs, the ESC compartment overlaying XENCs became squamous and the TSC compartment overlaying XENCs became cuboidal[
8], resembling the E6.75 natural embryos[
80]. Supplementing the XENC layer is essential for the maturation of both the ESC and TSS compartments by providing a basal membrane and plays a crucial role in embryonic development[
81]. However, it should be noted that XENCs are unable to contribute to PE, resulting in the inevitable absence of parietal yolk sac formation[
77].
ETS-embryos need ECM as a substitute for PrE lineages. However, ECM and adherent environments are not required for the generation of ETX-embryos[
6,
8,
12,
13,
15,
16]. Therefore, shaking, rolling, or rotating culture systems can be adapted for ETX-embryo formation with higher efficiency or enhanced development[
6,
12,
15,
16]. After 4 days, aggregates of ESCs, TSCs, and XENCs within inverted-pyramidal microwells (AggreWell) plates generate a structure resembling E5–6 mouse embryos, wherein the ESC and the TSC compartments merge with each other and are enveloped by a cell layer derived from XENC[
8]. Zhang et al. compared several different methods for ETX embryo formation and established the suspension-shaking culture method, which was most suitable for stimulating intercellular communication, recognition, and organization into specific compartments in order[
6].
Sozen et al. used AggreWell plates to form aggregates of the three types of blastocyst-derived stem cells, namely ESCs, TSCs, and XENCs, thereby generating ETX-embryos [
8] The ETX system enabled the researchers to recapitulate
in vitro processes of AVE formation, EMT, mesoderm, PGCs, and definitive endoderm formation as observed during early post-implantation development. After 96 h of culture, the ETX-embryos developed into a structure resembling E5.5 natural embryos. When comparing the developmental potential of ETX- and ETS-embryos, ETX-embryos yielded more T/Brachyury-expressing cells than ETS-embryos. These T/Brachyury-expressing cells were found to be expressing EMT markers,
Snail,
Vimentin,
Mmp9, and
N-cadherins[
82]. Intriguingly, PGC-like cells emerged on day 6 of culture at the boundary between the ESC and TSC compartments, analogous to the location where mesoderm and PGC are formed in E6.5–7.0 natural embryos. AVE specification in ETX-embryos was confirmed by asymmetric expression of Lefty1 on day 4–5 of culture and the expression of
Otx2 (a regulator of AVE), which was confined to XENCs overlying the EPI region but not in the extraembryonic compartment. Definitive endoderm cells derived from ESCs, characterized by
Foxa2 and
Sox17 expression, emerged on day 5 and eventually replaced the VE layers derived from XENCs by the end of day 6. Collectively, the ETX-embryos generated by Sozen et al. faithfully recapitulated the spatio-temporal events observed during gastrulation in natural embryos.
Zhang et al. utilized a nonadherent-suspension-shaking method to culture a combination of three types of stem cells, ESCs, TSCs, and XENCs, and generated embryo-like structures resembling E5.75 embryos[
6]. These ETX-embryoids exhibited spatial distribution of extraembryonic ectoderm, EPI, and VE, and formed a pro-amniotic cavity. Cavities formed earlier in the ESC compartment (by 60 h) than in the TSC compartment (by 72 h) and later coalesced to form a large cavity (by 84 h). To trace the XENC contribution in the ETX-embryoids, they used Lefty1-mCherry transgenic XENCs and found that DVE/AVE markers were detected in mCherry
+ XENC-derived cells. By using Blimp1-mVenus and Stella-ECFP double transgenic ESCs [
83,
84], PGC specification as well as mesodermal differentiation could be monitored because PGC marker Blimp1 is also co-expressed in many mesoderm-involved genes[
85,
86]. At 84 h, Blimp1-mVenus
+/Stella-ECFP
- cells were detected in the ESC compartment near the ESC and TSC boundary. These Blimp1-mVenus
+/Stella-ECFP
- cells were found to express other PGC markers (
Prdm14,
Stella, and
Tfapc2) and mesoderm markers (
Flk1,
Hhex, and
Hand1), indicating that mesoderm formation and PGC specification were induced in confined areas of ETX-embryoids. Moreover, the ETX-embryoids showed implantation potential after transfer into E2.5–3.5 pseudopregnant mice. At 48 h post-transfer, E5.5 embryo-like structures were observed within the decidual tissue of the uterus. However, the subsequent examination failed to detect further embryonic morphologies, indicating a limited developmental potential restricted to the earlier stages of implantation.
Bao et al. discovered that the efficiency of ETX-embryoid formation was closely associated with cadherin codes[
87]. Three major kinds of cadherins regulate cell-cell adhesion force during embryogenesis and gastrulation[
88]. E-cadherin is expressed across all lineages during peri-implantation development, whereas P-cadherin is specifically upregulated in the TE following implantation, and K-cadherin shows elevated levels exclusively in the PrE prior to implantation. Bao et al. observed that only 15.4% of the ETX-embryoids formed correctly sorted structures resembling postimplantation embryos, while a notable proportion exhibited missorted ETX structures such as mislocalization of XENCs and more than one EPI or trophoblast compartments. They found that the optimal balance between E-cadherin and K-cadherin played a crucial role in ensuring appropriate XENC sorting, and knock-down of P-cadherin in TSCs or E-cadherin in ESCs disrupted the process of ETX embryogenesis. Overall, the cadherin code exerted a significant influence on sorting efficiency and contributed to enhanced lumenogenesis and basement membrane formation in ETX embryos.
4.2. ETiX embryos using ESCs facilitating PrE-lineage differentiation
Since the ETX model system still showed limited gastrulation, several researchers attempted to use cell types other than wild-type stem cells. VE is the PrE-derived cell type that directly interact with EPI and extraembryonic ectoderm. However, XENCs were more similar to PE than to VE [
89,
90]. Therefore, XENCs need to be replaced with more VE-like cell types. Overexpression of
Gata4 or
Gata6 in ESCs efficiently induces endodermal lineage differentiation[
91,
92] that replaces XENCs[
11,
12,
13]. Amandei et al. used dox-inducible Gata4-containing ESCs (Gata4-ESCs) as a substitute for XENCs[
11,
12]. Compacted aggregates were formed 48 h after combining ESCs, TSCs, and dox-treated Gata4-ESCs in AggreWell. Lumenogenesis was observed in ESC and TSC compartments at 72 h, and the lumens were fused at 96 h. These ETX-embryos with induced XENCs were initially termed iETX but are referred to here as ETiX. Four-day-old ETiX embryos resembled E5.5 natural embryos showing AVE specification and migration to the distal/lateral position, which was rarely observed in ETX embryos. On day 5, ETiX embryos by Amadei et al. showed A-P axis formation, EMT, mesoderm, and definitive endoderm formation that typically occurs in E6.5 natural embryos[
93,
94,
95]. In approximately 20% of the ETiX embryos,
Runx1, an extra-embryonic mesoderm marker, was expressed in T/Brachyury
+ cells positioned between the VE-like layer and TSC compartment[
11,
96,
97]. However, beyond day 6, further development of ETiXs was not possible due to the limitations of the culture environment[
11].
Amadei et al. also showed that the ETiX embryos further developed to form neural tubes flanked by somites, beating heart, gut tubes, yolk sacs, and blood islands, comparable to E8.5 natural embryos[
12]. At day 7, T/Brachyury
+ notochord-like structures were detected in ETiX embryos[
12,
98]. Notochord induces neurulation by secreting signal molecules such as sonic hedgehog to pattern the dorsoventral axis and stimulates neural differentiation[
99,
100,
101]. An SOX1
+ neural tube-like structure was also found above the notochord, simulating the A-P axis of E8.0 embryos with SOX1
+ and SOX2
+ neuroepithelial cells[
12,
102]. The ETiX embryoids also showed regional expression of PAX6, OLIG2, NKX2-2, FOXA2, PAX3, and SOX10, confirming the presence of the neural tube, floor plate, somatic mesoderm, and neural crest cells[
12,
103,
104,
105,
106]. Further developmental potential of ETiX embryos was suggested by the detection of subclusters that showed transcriptomic similarity to E9.5 natural embryos[
12]. Somite formation, which is crucial for segmental organization, was also observed in ETiX embryoids with paired somite blocks expressing the HOXB4 protein, similar to natural E8.0 embryos[
12,
107]. Additionally, a beating structure expressing cardiac markers, myosin heavy chain 2 (MYH2), and GATA4, emerged below the encephalon region, reminiscent of early cardiac development seen in E8.0 natural embryos[
108,
109]. Amadei et al. attempted to extend the developmental potential of ETiX embryos up to the E8.5 natural embryos by employing the
ex utero culture technique on a roller culture platform, as detailed in the study by Aguilera-Castrejon et al.[
14]. Although the timing of these developmental events in the ETiX embryoids closely matched the corresponding stages observed in natural embryos, heart looping, which is typically observed in E8.5 natural embryo, was not observed[
110]. Day 8 ETiX embryoids reproduced the formation of foregut and hindgut pockets similar to E8.5 natural embryos via expressing SOX2 and SOX17, respectively. However, single-cell RNA-sequencing (scRNA-seq) data revealed that organ-specific identities in the gut appearing after E8.5 were not observed in ETiX, indicating a limited development of the VE[
12,
95].
ETiX embryoids are also capable of recapitulating the development of extraembryonic structures, including the amnion, yolk sac, and chorion-allantois complex, and RUNX1-positive blood islands, mirroring the developmental timeline of natural embryos[
12,
95,
111]. These structures emerged at specific stages; the amnion and amniotic mesoderm appeared on day 6, followed by the yolk sac and allantois on days 7 and 8. However, the chorion lineage in ETiX embryoids exhibited incomplete maturation, as evidenced by altered or absent expression of genes associated with the ectoplacental cone, trophoblast giant cells, and spongiotrophoblast cells. Therefore, the extraembryonic lineages derived from the EPC were mostly absent in ETiX embryoids, indicating an incomplete replication of the extraembryonic development[
12]. It is worth noting that the lack of interaction with the maternal environment in the ETiX model may lead to defective development of the extraembryonic compartment.
Figure 4.
Embryoid formation by the combination of wild-type ESCs with induced XENCs (iXENCs) and induced TSCs (iTSCs). ETiX embryoids are generated using iXENCs and EiTiX embryoids are generated using iXENCs and iTSCs. Key events and unique culture methods were illustrated for each ETiX and EiTiX embryoids. WT: wild-type; ESCs: embryonic stem cells; iXENCs: induced extraembryonic endoderm cells; TSCs: trophoblast stem cells; iTSCs: induced trophoblast stem cells.
Figure 4.
Embryoid formation by the combination of wild-type ESCs with induced XENCs (iXENCs) and induced TSCs (iTSCs). ETiX embryoids are generated using iXENCs and EiTiX embryoids are generated using iXENCs and iTSCs. Key events and unique culture methods were illustrated for each ETiX and EiTiX embryoids. WT: wild-type; ESCs: embryonic stem cells; iXENCs: induced extraembryonic endoderm cells; TSCs: trophoblast stem cells; iTSCs: induced trophoblast stem cells.
To induce the PrE lineage for ETiX embryo formation, Dupont et al. used Gata6-overexpressing ESCs (PrE-ESCs) that contained a dox-inducible
Fgfr2 and
Gata6 transgene[
13]. Upon induction of Gata6 with stimulation of the FGF-ERK pathway, PrE-ESCs subsequently express
Gata4 and
Sox17, similar to what is observed during normal embryogenesis[
13,
112]. Dupont et al. utilized a static culture system, U-bottomed 384-well plate, and introduced a time-delay method by adding TSCs on the following day after aggregation of ESCs and PrE-ESCs[
13]. This approach led to ETX-embryos having enhanced development potential, extending it until the late gastrulation stage. Until day 5, the developmental events of Dupont’s ETiX-embryos were comparable to previous ETX or ETiX models, including VE formation, PGC-specification, and mesoderm and A-P axis formation, as observed in E6.0–6.5 natural embryos[
13,
113]. By day 6, the ETiX-embryos exhibited a structure similar to that of the late gastrulation stage of E7.5 natural embryos, characterized by the formation of exocoelom surrounded by chorion and amnion derived from extraembryonic mesoderm. Staining with Eomes confirmed the presence of a bilayer amnion-like membrane[
13,
114]. By whole-mount staining analysis, Tal1
+ hematoendothelial/blood progenitors-like cells were identified, and this finding was further validated using scRNA-seq, revealing the similarity between day 6 ETiX and
in vivo E7.5 embyos[
13,
115,
116]. Further formation of headfold, heart, and foregut entrance were sporadically examined in ETiX embryos on day 7 or 8 of culture.
4.3. EiTiX embryos constructed with ESCs and induced TSCs (iTSCs) and induced XENCs (iXENCs)
Langkabel et al. proposed the EiTiX model using ESC and inducible ESC lines[
9,
10]. They employed 5F-ESCs (carrying dox-inducible Cdx2, Tfap2c, Eomes, Gata3, and Ets2) as substitutes for TSCs, and iGATA6-ESCs (carrying dox-inducible Gata6) as substitutes for XENCs. To achieve a non-adherent 3D culture, these three ESC lines were co-cultured in an agarose micro-tissue well, and after 24 h of culture, doxycycline was added to the medium for 3 days to induce transgene expression of 5F-ESCs and iGATA6-ESCs. By allowing an additional day without doxycycline, the aggregates successfully underwent compartmentation into ExE-, VE-, and EPI- like structures in a corresponding manner, mimicking E5.25 embryos[
3,
117]. Formation of rosette and lumen was observed in both the EPI and ExE compartments; however, the fusion of the lumens (leading to the formation of the proamniotic cavity) and further developmental progression were rarely observed. These embryoids were named as Rosette-to-Lumen stage embryoids (RtL-embryoids) to highlight their specific transcriptional process, which involves epithelialization to lumenogenesis.
The EiTiX strategy was also employed by the Zernicka-Goetz group in 2022 using iCdx2-ESCs (carrying dox-inducible Cdx2) and iGata4-ESCs (carrying dox-inducible Gata4)[
15]. Aggregates of ESCs, iCdx2-, and iGata4-ESCs were able to form embryo-like structures called EiTiX-embryoids resembling post-implantation embryos[
15,
118,
119]. On day 6, EiTiX-embryoids underwent EMT, PGC specification, and intercalation of definitive endoderm (Foxa2
+ and Sox17
+) into the VE-like layer, which was corresponding to E6.5-7.5 natural embryos. By day 7 of culturing, EiTiX-embryoids exhibited the A-P axis through the expression of SOX1 and SOX2, indicating the onset of neurulation[
102,
120]. In addition, the expression of Myh2 and Gata4, accompanied by a beating heart, indicated cardiac development[
108,
109]. Subsequently, on day 8, the EiTiX-embryoids displayed well-formed headfolds, a developed heart, tail, and chorion, resembling the developmental stage of E8.0–8.5 natural embryos[
121,
122]. Furthermore, the expression of the pharyngeal mesoderm marker Islet1, which had not been confirmed in previous models, was observed between the heart region and the forebrain region[
123]. By tracking the GFP
+ iCdx2-ESCs, they found that iCdx2-ESCs developed into the chorion but not into the ectoplacental cone and trophoblast giant cell lineages.
Tarazi et al. tried to combine former EiTiX-embryoid formation methods (static culture using AggreWells and nonadherent-suspension-shaking method) and
ex utero culture method using a roller culture system to enhance post-implantation development of EiTiX-embryoids[
14,
16]. Three naïve pluripotent state ESCs (wild-type ESCs, iCdx2-ESCs, and iGata4-ESCs) were used to generate EiTiX-embryoids, which subsequently formed egg-cylinder like structures referred to as “eEmbryos” after day 5. Upon transfer into a roller
ex utero culture system, 8-day-old eEmbryos displayed remarkable similarities to E8.5 natural embryos, including the presence of four pairs of somites, a neural tube, an invaginating foregut, a beating heart, and the establishment of the head-to-tail and dorsoventral axes. Additionally, advanced eEmbryos exhibited blood circulation in the yolk sac. However, like previous embryoid models, eEmbryos lacked key markers associated with chorion and ectoplacental cone progenitor cell lineages, such as trophoblast giant cells and spongiotrophoblast, despite the emergence of similar structures[
14,
16].