2.1. Routine Blood Tests
If IBD is suspected, laboratory tests can guide further investigation and contribute to the differential diagnosis. Blood count, electrolytes, erythrocyte sedimentation rate (ESR), C reactive protein (CRP) and stool cultures are routine exams which can be easily performed on peripheral blood samples and are useful to detect acute ongoing inflammation. However, they are not specific to detect intestinal inflammation.
Especially when managing pediatric patients, non-invasive investigations should represent the first line assessment. The performance of blood tests has been tested in 153 children with a clinical suspicion of IBD [
1]: 103 had a final diagnosis of IBD. Platelet count and hemoglobin rate were found the most reliable tests for differentiating IBD from non-IBD patients (p<0.002 and p< 0.007, respectively). Anemia or thrombocytosis had a diagnostic sensitivity and specificity of 91% and 80%, with a positive predictive value of 94% and a negative predictive value of 76%.
Anemia is frequent in IBD. It may stem from multiple sources, the most obvious being acute, chronic, or occult bleeding, but the role of chronic inflammation also needs to be considered [
2,
3]. The biochemical assessment of iron metabolism allows one to discriminate iron-deficiency anemia which is characterized by low serum iron and ferritin with high serum levels of transferrin and total iron binding capacity, from anemia induced by chronic inflammation which has a normal/high ferritin, low transferrin, and total iron binding capacity.
The thromboembolic disease has been described in IBD, and especially in ulcerative colitis, possibly secondary to colonic inflammation. During active disease phases [
4] not only inflammatory parameters (CRP, ESR, platelet count) increase but also coagulation parameters (thrombin-antithrombin complexes, fibrinogen, FgDP, and FbDP), the coagulation and fibrinolytic cascades are activated, with the hemostatic arm favoring coagulation. This situation may persist also when the acute phase subsides.
ESR has been found related to the clinical activity and extent of disease in ulcerative colitis [
5]
. The ability of clinical and biochemical markers to predict failure of medical therapy has also been tested in 67 patients admitted for severe colitis. ESR > 75 mm/h together with fever > 38°C on the day of arrival were selected as the best predictors of the need for a colectomy [
6]
.
CRP is inexpensive and easy to perform and is unaffected by the patient’s medication. It is an acute phase reactant with a half-life of 18 hours, which rapidly declines with effective therapy and it represents a useful prognosticator in UC. More than 8 bowel movements a day and a CRP higher than 45 mg/L after 3 days of intensive medical therapy carry an 85% chance of colectomy in patients with severe colitis [
7].
However, CRP generation is genetically determined in each individual patient [
8]. CRP is a poor parameter of inflammation especially in UC, about 50% of UC patients have normal CRP during a disease flare [
9]. Moreover, elevated serum CRP occurs in most conditions of systemic inflammation and it is therefore unspecific.
Recently, several inflammation-based ratios of different biomarkers have been proposed in IBD diagnosis and prediction of IBD. In a retrospective analysis of 362 patients with IBD and 100 healthy individuals, seven ratio markers have been analyzed. Patients with Crohn's disease or ulcerative colitis exhibited higher levels of neutrophil- to-albumin ratio, neutrophil-to-pre-albumin ratio, fibrinogen-to-pre-albumin ratio (
P < 0.001), and lower levels of albumin-to-alkaline-phosphatase ratio, and Prognostic Nutritional Index (
P < 0.001) [
10].
2.2. Immunological and Other Antibody Markers
p-ANCA (perinuclear anti-neutrophil cytoplasmic antibodies) have been described in ulcerative colitis patients since thirty years, though the exact epitope remains unknown [
11,
12]. Examined by indirect immunofluorescence, the neutrophil labeling pattern of these antibodies shows a perinuclear staining distinguishable from the one produced by ANCA in Wegener granulomatosis, which exhibits a diffuse fluorescent neutrophil cytoplasm labeling. P-ANCA have a sensitivity of 52% and a specificity of 91% in differentiating ulcerative colitis from Crohn’s disease [
13].
Proteinase 3 antineutrophil cytoplasmic antibody (PR3-ANCA) is a serologic marker for granulomatosis with polyangiitis. The role as a diagnostic marker for ulcerative colitis was assessed in in a large number of IBD patients including 77 patients with new-onset ulcerative colitis (disease diagnosed within 1 month). PR3-ANCA ≥3.5 U/mL demonstrated high specificity for the diagnosis of ulcerative colitis especially in the subgroup with a new-onset of the disease. PR3-ANCA measurement has also proved to correlate with disease severity and extension and in predicting the clinical course [
14].
Recently, a Japanese study found that measuring serum IgG anti-integrin αvβ6 autoantibodies (IgG anti-αvβ6) was sensitive and specific for the diagnosis of ulcerative colitis [
15]. The same results were confirmed in another study from Sweden [
16].
Anti Saccharomyces cerevisiae antibodies (ASCA) are antibodies directed against the cell wall of baker’s yeast. This antibody occurs in the serum in Crohn’s disease, but not in ulcerative colitis. A meta-analysis of 14 studies performed in Europe, Israel and Canada [
17] found that serum levels of the ASCA have a sensitivity of 56% and a specificity of 88% in discriminating Crohn disease from ulcerative colitis. Moreover, ASCA-positive Crohn disease patients show higher risk of disabling disease, including stricturing and penetrating behavior, earlier onset and perianal disease, with an overall increased need for surgery [
17,
18]. Both p-ANCA and ASCA are highly specific, but their sensitivity is rather low so these tests remain unsuitable for screening purposes [
19]. The sensitivity and specificity of ASCA+/p-ANCA− are reported to be higher (0.70 and 0.93, respectively) in pediatric Crohn’s disease [
20,
21]. Overall, their accuracy in diagnosis of IBD is suboptimal ranging between 71 and 80% [
22]. p-ANCA and ASCA have been documented in serum even years before the diagnosis of IBD. The early detection of these markers might therefore help identify the risk of future disease and pinpoint patients with a more aggressive clinical course [
23].
Other anti-glycan antibodies, namely anti-chitobioside carbohydrate IgA (ACCA), anti-mannobioside carbohydrate IgG (AMCA), anti-laminaribioside IgG (ALCA), anti-laminarin carbohydrate antibodies (anti-L), and anti-chitin carbohydrate (anti-C), have been detected in the serum of IBD patients. Their levels seem to remain stable over time [
24]. In general, each antiglycan antibody shows good specificity and positive predictive value for the diagnosis of Crohn’s disease rather than ulcerative colitis [
24].
The usefulness of a panel of anti-glycan antibodies increase sensitivity as demonstrated in a small Israelian cohort of ASCA negative Crohn’s disease patients who proved positive to ALCA or ACCA in 44% of the patients [
17].
A genetically determined loss of tolerance has been suspected measuring anti-OmpC and anti-Pseudomonas fluorescence-associated peptide I2 antibodies in monozygotic twins. Dizygotic twin pairs did not show the same similarity [
25].
In addition, positivity for ASCA IgA, ASCA IgG, anti-OmpC, anti-CBir1, or anti-flagellin antibodies was detected in 65% of the Crohn’s disease patients many years before the diagnosis [
26]. The same degree of prediction of IBD diagnosis has been confirmed with a panel of serum antibodies, including p-ANCA, ASCA IgA, ASCA IgG, anti-OmpC, and anti-CBir1, detected in samples stored four years previously [
27].
The role of anti-glycan antibodies in disease pathogenesis has also been investigated in unaffected first-degree relatives and the increased antibody response was documented by both qualitative and quantitative analysis. This impaired immunological response to microbial antigens supports the hypothesis of a genetic predisposition to the disease [
28].
Recently, new evidence on the predictive role of microbial antibodies and immune-inflammatory markers has been explored using archive serum samples from the US Defense Medical Surveillance System [
29]. A panel of several inflammatory proteins and immunological markers showed high accuracy in predicting the diagnosis of Crohn's disease within 5 years with high accuracy. In particular, the response to bacteria was peculiar. If this holds, preventive microbiome targeted interventions could be implemented in predisposed individuals. By contrast, this was not true for ulcerative colitis with p-ANCA being a suboptimal predictor of developing the disease [
29].
New insights into the pathogenesis of IBD involve an inappropriate and persistent inflammatory response to commensal gut microbiota in genetically susceptible individuals. Indeed, the importance of the microbiota in the onset and perpetuation of inflammation has been well documented. IBD patients exibit a distinct microbiota in comparison with in healthy subjects. Microbial biomarkers hold promise in assessing disease activity, treatment effectiveness and in personalizing treatment strategies. Moreover, the potential benefits of microbiome-modulating interventions with the use of probiotics, prebiotics, antibiotics, and even fecal microbiota transplantation have reached the IBD field. IBD patients show multiple differences in the composition of gut microbiota in comparison to healthy individuals, particularly regarding microbial diversity and relative abundance of specific bacteria. Patients with IBD show higher levels of Proteobacteria and lower amounts of Bacteroides, Eubacterium, and Faecalibacterium than healthy individuals [
30].
In Crohn’s disease, a loss of beneficial bacteria, such as Faecalibacterium prausnitzii and an increase in Escherichia coli, have been observed. Particular strains of E. coli, such as entero-adherent E.Coli may be associated with disease in a subset of Crohn’s disease patients with ileal involvement [
31].
The composition of the fecal microbiota has been less characterized in ulcerative colitis patients but a lower abundance of Roseburia hominis (p<0.0001) and Faecalibacterium prausnitzii (p<0.0001) was found in ulcerative colitis patients compared to controls by real-time PCR analysis [
30]. Longitudinal studies involving a large cohort of European IBD patients confirmed dysbiosis and lower microbial diversity in Crohn’s disease than in ulcerative colitis patients [
32].
The important role that intestinal microbiota play in IBD pathogenesis has been recently investigated by means of serological profiling of 100 Crohn's disease patients, 100 ulcerative colitis patients and 100 healthy controls against 1173 bacterial and 397 viral proteins from 50 bacteria and 33 viruses on protein microarrays. Anti-bacterial antibody responses showed greater differential prevalence among the three subject groups than anti-viral antibody responses. Novel antibodies against the antigens of
Bacteroidetes vulgatus (BVU_0562) and
Streptococcus pneumoniae (SP_1992) showed higher prevalence in CD patients relative to healthy controls, while antibodies against the antigen of
Streptococcus pyogenes (SPy_2009) showed higher prevalence in healthy controls relative to ulcerative colitis patients. Using these novel antibodies, a biomarker panel was built to distinguish Crohn’s disease
vs control, ulcerative colitis
vs control, and Crohn’s disease
vs ulcerative colitis [
33].
The microbial signature specific to Crohn’s disease combined with either imaging techniques or fecal calprotectin data has been proposed in decision-making when the diagnosis is initially uncertain.
2.4. MicroRNA (miRNA)
MiRNAs are a group of small noncoding RNAs, ~18–22 nucleotides, which act as regulators for post-transcriptional gene expression. The miRNAs circulate in the human peripheral blood but can also be found in urine, saliva, and feces [
35].
The miRNAs are engaged in disease origin and development, and some are pathology specific [
36].
MiRNAs affect the intestinal barrier and inflammatory reactions so most recent research in the IBD field has measured circulating miRNAs in body fluids such as blood or feces and in homogenized tissue biopsies using microarray profiling techniques, quantitative reverse transcription PCR, and next-generation sequencing [
37].
Among the many miRNAs reported, MiR-21 and miR-155 have repeatedly been identified and seem to be the most related to IBD [
38,
39]
.
MiR-21, in particular, seems to be the most intriguing because it increases the paracellular permeability of the intestinal epithelium and the level of TNF alfa [
40,
41].
Further evidence of higher levels of miR-16, miR-21, and miR-223 was demonstrated in IBD patients in comparison with controls, especially in Crohn’s disease patients [
42].
Paraskevi et al. reported increased blood levels of many miRNAs with some differences between Crohn’s disease and ulcerative colitis (miR-16, miR-23a, miR-29a, miR-106a, miR-107, miR-126, miR-191, miR-199a-5p, miR-200c, miR-362-3p, and miR-532-3p in Crohn’s disease, and miR-16, miR-21, miR-28-5p, miR-151-5p, miR-155, and miR-199a-5p in ulcerative colitis patients) [
43].
2.5. Other Markers
Extraintestinal manifestations, osteo-articular, cutaneous, ocular, hepatic, pancreatic, nephrological, endocrinological, hematological, pulmonary, thromboembolic, are well recognized as being associated with IBD.
Arthropathy represents the most frequent extraintestinal manifestation of IBD, reported in 10-35% of patients [
44]. Biochemical markers are not useful for the diagnosis when the two different inflammatory events coexist. Serum human cartilage glycoprotein 39 (HC gp39, also called YKL-40) was investigated in IBD patients with articular symptoms. Serum levels of HC gp39 were significantly increased in IBD patients with versus those without arthropathy, or controls (p<0.001 and p<0.01, respectively). The protein’s level also seems to correlate with the number of joints involved, suggesting that this substance could be used as a disease activity marker in arthritis associated with IBD [
45].
Hepatobiliary diseases in IBD may range from abnormal liver function tests to primary sclerosing cholangitis. Altered liver function tests have been reported in 11% of a large cohort of Swedish patients, especially related to intestinal inflammation, and were usually reversible after the disease was brought under control [
46]. The occurrence of liver steatosis and increased transaminases has also been demonstrated in a multicenter study involving IBD patients and controls [
47].
Primary sclerosing cholangitis has a prevalence in ulcerative colitis ranging from 2.5 to 7.5%. 82% of patients are p-ANCA positive [
48]. Most patients are asymptomatic at the time of diagnosis and routine tests show increased alkaline phosphatase and gamma-glutamyl transferase.
Intestinal permeability reflects the integrity of the intestinal mucosal barrier, which enables the passage of luminal substances by unmediated diffusion [
49]. Intestinal permeability can be assessed non-invasively
in vivo by measuring the urinary excretion of orally-administered sugars such as lactulose/mannitol, glucose and sucralose or radioactive probes such as 51Cr-EDTA. An increased permeability to lactulose/mannitol together with an increased CRP levels were independent predictors of a final diagnosis of small bowel disease in 261 consecutive patients referred to a tertiary referral center with chronic diarrhea [
50]. In Crohn’s disease abnormal permeability is detected in the majority of patients with small bowel disease location, while in Crohn’s colitis sensitivity is lower [
51]. However, intestinal permeability has not gained widespread application as screening test to discriminate between patients with Crohn’s disease and irritable bowel syndrome. The reason for this is probably that the urinary sugar analysis is time consuming, needs sophisticated equipment, and there may be some concern that the tests lack specificity being abnormal in a variety of other small intestinal conditions, such as celiac disease, acute gastroenteritis, food intolerance, and allergy [
52].