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This version is not peer-reviewed
Item | Category | Size |
Sequencing data | stLFR (Gb) | 164.75 |
WGS (Gb) | 96.76 | |
RNA-seq (Gb) | 10.42 | |
Assembled genome (Gb) | 1.46 | |
Longest Contig (Mb) | 0.52 | |
Contig N50 (Mb) | 0.03 | |
Longest scaffold (Mb) | 39.38 | |
Scaffold N50 (Mb) | 6.21 | |
GC content (%) | 37.9 |
Type | Repeat Size | % of genome |
Trf | 49,665,678 | 3.158437 |
RepeatMasker (RRID:SCR_012954) | 254,179,490 | 16.16428 |
Proteinmask | 190,282,517 | 12.100819 |
De novo | 636,067,480 | 40.45005 |
Total | 673,253,494 | 42.814856 |
Type | Length (Bp) | % in genome |
DNA | 27,712,037 | 1.762318 |
LINE | 464,343,121 | 29.529418 |
SINE | 984,426 | 0.062604 |
LTR | 188,498,215 | 11.987348 |
Other | 0 | 0 |
Satellite | 1,180,615 | 0.07508 |
Simple_repeat | 2,250,205 | 0.143099 |
Unknown | 2,609,514 | 0.165949 |
Total | 636,067,480 | 40.45005 |
Number | Percentage (%) | |
Total | 24,402 | 100% |
Swiss-Prot annotated | 19,527 | 80.02% |
KEGG annotated | 20,869 | 85.52% |
TrEMBL annotated | 22,927 | 93.96% |
InterPro annotated | 23,089 | 94.62% |
GO annotated | 14,512 | 59.47% |
Overall | 23,844 | 97.71% |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Submitted:
09 August 2023
Posted:
09 August 2023
You are already at the latest version
This version is not peer-reviewed
Submitted:
09 August 2023
Posted:
09 August 2023
You are already at the latest version
Item | Category | Size |
Sequencing data | stLFR (Gb) | 164.75 |
WGS (Gb) | 96.76 | |
RNA-seq (Gb) | 10.42 | |
Assembled genome (Gb) | 1.46 | |
Longest Contig (Mb) | 0.52 | |
Contig N50 (Mb) | 0.03 | |
Longest scaffold (Mb) | 39.38 | |
Scaffold N50 (Mb) | 6.21 | |
GC content (%) | 37.9 |
Type | Repeat Size | % of genome |
Trf | 49,665,678 | 3.158437 |
RepeatMasker (RRID:SCR_012954) | 254,179,490 | 16.16428 |
Proteinmask | 190,282,517 | 12.100819 |
De novo | 636,067,480 | 40.45005 |
Total | 673,253,494 | 42.814856 |
Type | Length (Bp) | % in genome |
DNA | 27,712,037 | 1.762318 |
LINE | 464,343,121 | 29.529418 |
SINE | 984,426 | 0.062604 |
LTR | 188,498,215 | 11.987348 |
Other | 0 | 0 |
Satellite | 1,180,615 | 0.07508 |
Simple_repeat | 2,250,205 | 0.143099 |
Unknown | 2,609,514 | 0.165949 |
Total | 636,067,480 | 40.45005 |
Number | Percentage (%) | |
Total | 24,402 | 100% |
Swiss-Prot annotated | 19,527 | 80.02% |
KEGG annotated | 20,869 | 85.52% |
TrEMBL annotated | 22,927 | 93.96% |
InterPro annotated | 23,089 | 94.62% |
GO annotated | 14,512 | 59.47% |
Overall | 23,844 | 97.71% |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Cristian Salinas-Restrepo
et al.
Toxins,
2022
Matthew Holding
et al.
Toxins,
2018
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