This new pandemic has made it possible to collect a significant amount of data from all over the world about post-infective complications and post-vaccination side effects. The severe complications observed in some Covid-19 patients, both elderly and very young, and all the severe side effects after anti-SarsCoV2 vaccinations are very similar to the complications/side effects following many other viral infections/vaccinations. Based on epidemiological and experimental evidence, there is a growing awareness of the role of infectious diseases in the onset of autoimmune disorders [
46]. Literature refers that most patients showing severe complications during or after Covid 19 diseases are affected by comorbidities, which recognize an autoimmune cause predisposing to a higher incidence of such severe complications. Generally, immunological diseases are classified into three major groups: autoinflammatory, autoimmune, and mixed pattern [
49]. Many common diseases with strong inflammatory components could be classified as predominantly autoinflammatory, although most conditions also have evidence for autoimmunity in the clinical setting. This means that all immunological diseases can be conceptualized as being purely autoinflammatory or autoimmune or a combination of autoinflammatory-autoimmune mechanisms that variably interact in the phenotypic expression of disease [
49]. Associations between viral infections and autoimmune diseases have been reported repeatedly in the literature [
50]. Active human cytomegalovirus (HCMV) infection is often found in patients diagnosed with Immune Thrombocytopenic Purpura (ITP) [
51] and in SLE [
52]. Another virus with a reported association with SLE is the Epstein-Barr virus (EBV] [
53,
54]. High titers of anti-EBV antibodies are also present in patients affected by RA [
55]. Other examples of viral infections linked to autoimmune diseases such as islet autoimmunity and type 1 diabetes include enteroviruses (e.g., coxsackievirus A4, coxsackievirus A2, and coxsackievirus A16) and measles, mumps and rubella [
56,
57]. Antibodies against several common human coronaviruses have been linked with autoimmunity in people with MS, SLE, Sjögren’s syndrome, and mixed connective tissue disease [
58,
59,
60]. Considering these associations between coronaviruses and autoimmunity and the sequence similarity of SARS-CoV-2 to these viruses, the same link between SARS-CoV-2 and autoimmunity is highly plausible [
61]. To our knowledge, numerous studies demonstrated that COVID-19 is associated with a different degree of risk for various autoimmune diseases [
62]. Many authors recognize a correlation between the complications of COVID-19 disease and the GBS, autoimmune hemolytic anemia, thyroiditis, Immune Thrombocytopenia (ITP), and KD [
63,
64,
65,
66,
67]. Moreover, another series of studies has shown that COVID-19 leads to an aggravation of auto-immune pathologies already present in the patient, such as MS, SLE, or different forms of coagulopathy [
68,
69,
70,
71,
72,
73]. Most Covid-19 patients who develop severe complications are systematically affected by a large variability of autoimmune/chronic inflammatory immune-related comorbidities such as antiphospholipid syndrome (APS), systemic vasculitis, systemic autoimmune diseases, GBS, Kawasaki syndrome and MIS-C [
66,
74,
75,
76,
77,
78,
79]. Studies report the concomitant or following COVID-19 disease of autoimmune-like and hyperinflammatory vascular/neurological manifestations such as the secondary hemophagocytic lymph-histiocytosis (HLH), ITP, Autoimmune Hemolytic Anemia (AIHA), thrombotic events associated with anti-Phospholipid antibodies (aPLs) and Lupus Anticoagulant (LAC) as in the Antiphospholipid Syndrome (APS), GBS and neurologic sensory-motor demyelinating syndrome resembling GBS, Miller Fisher Syndrome, Kawasaki-like disease, arthritis, skin manifestations [
39,
78,
80]. A recent study reported an unusually high level of antibodies to GBS glycans in 15% of Covid-19 patients and to several other glycolipids not associated with GBS, such as GD3, fucosyl-GM1, GM2, and GM3 >35-fold higher than the largest signals in the control group; when considering all the glycolipids (GBS and non-GBS), 35% of the patients had high antibodies to at least one glycolipid [
81]. Interestingly, antibody signals to gangliosides did not correlate with IgG titers to the spike protein, supporting the hypothesis that the severe complications resembling autoimmune diseases in Covid-19 are not due to viral circulation or direct viral cell damage [
81]. After a SARS-CoV2 infection, often regardless of its severity, many patients continue to show clinical signs of debilitation, easy fatigue, concentration difficulties, and memory problems, even for several months, experiencing the so-called “Long COVID” syndrome [
82]. This syndrome, more frequent in women, may result from poly-organ damage induced either by the excessive inflammatory response activated by the virus or by an autoimmune reaction unmasked by SARS-CoV-2 [
82]. Women would be more exposed to this syndrome as they have stronger innate and acquired immunological responses than males, and both genes and hormones are involved in this sexual difference [
83]. These different dynamics in immune response between women and men can explain why there is a higher incidence of autoimmune diseases in women, while in men, the susceptibility to neoplasms and infectious diseases is higher [
83,
84]. Morniroli et al., 2020 [
85] postulated that the epidemiologic characteristics of COVID-19 [greater severity in male and older individuals] might be partially explained by the sex and age-related differences of sialome among humans and that COVID-19 clinical manifestations differ according to individual differences in the sialic acid expression on cell surfaces. Similarly, Torres-Acosta and Singer, 2020 [
86] speculated that SARS-CoV-2’s ability to affect T lymphocyte and myeloid cell physiology, coupled with age-related maladaptive biological phenomena (epigenetic alterations and mitochondrial dysfunction, telomere attrition, and cellular senescence, altered intercellular communication), explains the strong association between advanced age and increased risk of COVID-19-related morbidity and mortality. The authors explain the similarity of the ARDS, induced by both Sars-CoV-2 and Influenza A virus, as an “immunological reaction” to the presence of viral RNA in the host cell cytoplasm during the replication cycle. Indeed, they activate similar intracellular antiviral pathways and subsequent recruitment of similar immune cells to the respiratory epithelium [
87,
88,
89]. This is the same mechanism observed in many autoimmune diseases, e.g., Kawasaki Syndrome [
90], as well as in many other viral infections, including influenza, in which the Macrophage Activation Syndrome [MAS] - a life-threatening clinical entity - occurs [
87]. However, these hypotheses do not explain why the same reactions, considered by all authors mentioned above to be related to age and aging, occur in very young patients with autoimmune syndromes such as Kawasaki Syndrome [
90,
91]. Furthermore, these hypotheses do not explain the constant correlation between the severe complications in some cases of Covid-19 and comorbidities such as diabetes, atherosclerosis, cardiovascular diseases, etc.