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supplementary.zip (1.09MB )
This version is not peer-reviewed
Submitted:
12 February 2024
Posted:
13 February 2024
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No. | Binding Energy Kcalmol-1 | Inhibition constant (Ki nmol) | Exp. inhibition % |
Binding residues | Hydrogen bonds (distance, Å) |
---|---|---|---|---|---|
15 | -12.54 | 0.638 | 83.4 | Leu30, Asp32, Tyr71, Gln73, Lys107, Ile110, Trp115, Asp228, Thr231, Thr320 | Phe108 |
16 | -13.16 | 0.227 | 87.0 | Gln12, Gly13, Leu30, Asp32, Tyr71, Gln73, Lys107, Phe108, Asp228,Gly230, Thr231, Thr282 | Thr72 |
17 | -12.86 | 0.376 | 63.1 | Gln12, Gly13, Leu30, Asp32, Tyr71, Gln73, Lys107, Phe108, Asp228,Gly230, Arg235, Thr282 | Thr72 |
18 | -13.65 | 0.099 | 74.5 | Gln12, Gly13, Leu30, Asp32, Tyr71, Gln73, Lys107, Phe108, Asp228,Gly230, Thr231, Thr282 | Thr72 |
19 | -13.62 | 0.103 | 72.1 | Gln12, Gly13, Leu30, Asp32, Tyr71, Gln73, Lys107, Phe108, Asp228,Gly230, Thr231, Thr282 | Thr72 |
20 | -13.19 | 0.213 | 62.4 | Gly13, Asp32, Tyr71, Gln73, Gly74, Lys107, Phe108, Asp228,Gly230, Thr231, Thr282 | Thr72 |
21 | -11.32 | 5.02 | 60.5 | Gln12, Gly13, Tyr71, Gln73, Gly230, Thr231, Thr282 | Thr72 |
22 | -12.05 | 1.47 | 61.9 | Leu30, Tyr71,Thr72, Gln73, Lys107, Ile110, Trp115, Gly230, Thr231, Arg235 | Phe108 |
23 | -11.33 | 4.9 | 79.7 | Gln12, Gly13, Leu30, Tyr71, Gln73, Asp228, Gly230, Thr231, Arg235, Val232 | Thr72 |
24 | -10.12 | 38.3 | 89.2 | Gln12, Gly13, Tyr71, Gln73, Lys107, Phe108, Asp228,Gly230, Thr231, Thr282 | Thr72 |
25 | -11.82 | 2.16 | 83.1 | Leu30, Tyr71,Thr72, Gln73, Ile110, Ile118, Asp228, Thr229, Gly230, Thr231, Thr232 | Phe108 |
26 | -12.51 | 0.681 | 91.0 | Gln12, Gly13, Leu30, Tyr71, Thr72, Gln73, Phe108, Ile110, Trp115, Asp228,Gly230, Thr231, Arg235 | Lys107 |
27 | -12.59 | 0.593 | 81.3 | Gly13, Asp32, Tyr71, Gln73, Phe108, Ile110, Ile226, Asp228,Gly230, Thr231,Thr232,Arg235, Val332, Thr329 | Lys107 |
28 | -9.98 | 56.95 | 78.6 | Tyr71, Lys107, Phe108, Ile110, Asp228,Thr229, Thr231, Arg235, Val332 | ---- |
Xray | -11.45 | 4.0 | nd | Leu30, Asp32, Tyr71, Lys107, Phe108, Ile110, Trp115,Asp228,Thr229, Gly230, Arg235 | Gln73, Phe108, Asp228 |
No | Binding residues | Hydrogen bonds (distance, Å) | Pi-pi interactions | |||
---|---|---|---|---|---|---|
AChE | BChE | AChE | BChE | AChE | BChE | |
15 | Tyr70,Asp72,Gly118, Tyr121, Gly123, Phe330, Tyr334, Trp432, Ile439 | Asp70,Trp82,Gln119, Tyr120,Pro285,Leu286, Ala328,Phe329,Tyr332, Trp429 | Tyr334 | His438 | Trp84, Tyr334 | Tyr440 |
16 | Tyr70,Asp72,Gly118, Tyr121, Ser122, Phe330, Leu333, Trp432, Met436 | Asp70,Gly116, Gln119, Ser196,Pro285, Ser287, Asn289, Ala328, Phe329, Tyr332 | Tyr334 | His438 | Trp84 | Trp82, Tyr440 |
17 | Asp72, Gly118, Tyr121, Ser122, Gly123, Phe330 | Gly115,Gly117,Gln119, Gly121,Glu197,Ser198, Trp231, Pro285,Leu286, Ser287,Phe329, Phe398 | Tyr334 | His438 | Tyr70, Trp84, Trp432 | Trp82, Phe329, Phe398 |
18 | Tyr70, Asp72, Gly118, Tyr121, Ser122, Trp432, Met436 | Tpr82, Gly115,Gly117, Gln119,Ser198, Pro285, Leu286,Ser287, Ala328 | Tyr334 | His438 | Trp84, Phe330 | Tyr332 |
19 | Tyr70,Asp72,Gly118, Tyr121, Ser122, Phe330, Trp432, Met436 | Asp70,Gly117, Leu286, Ala328,Phe329,Tyr332, Trp430, Tyr440 | Tyr334 | His438 | Trp84 | Trp82, His438 |
20 | Tyr70,Asp72,Gly117, Gly118, Phe330, Trp432, Met436, Ile439, His440, Tyr442 | Gly115, Gly117, Gln119, Pro285, Ser287, Ala328 Tyr332, Trp430, Tyr440 | Tyr334 | His438 | Trp84 | Trp82, Tyr440 |
21 | Tyr70,Asp72, Asn85, Pro86,Gln89,Tyr121, Tyr334, Phe330, Tyr442, Ile439 | Gly116, Thr120, Glu197, Pro285, Ala328, Phe329, Tyr332, Trp430 | His440 | His438 | Trp84, Phe330, His440 | Trp82, Tyr128, Tyr332 |
22 | Asp72, Gly118, Tyr121, Phe290, Tyr334, Trp432, Ile439 | Gly117, Thr120, Trp231, Leu286, Phe398 | His440 | His438 | Trp84, Phe330, His440 | Trp82, Ala328 |
23 | Tyr70, Val71, Asp72, Asn85, Tyr121, Ser122, Trp279, Phe331, Tyr334, His440, Gly441 | Asp70, Trp82, Gly115, Gly116, THR120, Tyr128, Pro285, Leu286, Ala328, Tyr332, Trp430 | Tyr334 | His438 | Trp84 | Tyr440 |
24 | Asp72, Gly118, Tyr121, Ser122, Leu127, Trp279, Trp432, Ile439 | Gly115, Gly116, Gly117, Gln119, Tyr128, Ser198, Pro285, Ala328, Phe329, Tyr332, Trp430, Tyr440 | Tyr334 | His438 | Trp84, Phe330 | Trp82, Trp430, Tyr440 |
25 | Asp72, Ser81, Trp84, Gly118, Gly119, Tyr121, Phe290, Phe330, Phe331, Trp432 | Gly117, Thr120, Trp198, Leu286, Ala328, Tyr332, Phe398, Trp430, Tyr440 | Tyr334 | His438 | Phe330 | Trp82, His438, Tyr440 |
26 | Val71, Asp72, Gly118, Gly119, Tyr121, Trp279, Phe290, Phe330,Tyr334, His440 | Asp70, Trp82, Gly116, THR120, Glu197, Ser198, Pro285, Ala328,Tyr332, Trp430 | Ser122 | His438 | Tyr70 | His438 |
27 | Asp72, Trp84, Gly118, Tyr121, Ser122, Trp279, Phe290, Phe330,Phe331,Tyr334, Gly335, His440 | Gly115, Gly116, THR120, Glu197, Ser198, Ser287, Ala328, Phe329, His438 | Tyr70 | Trp82 | Phe331 | Tyr332, Tyr440 |
28 | Tyr70, Asp72, Trp84, Asn85,Gly118,Tyr121, Ser122, Trp279, Tyr334 | Gly116, Ser198, Thr284, Pro285, Ala328, Tyr332, Tyr440 | His440 | His438 | Phe330 | Trp82, Tyr440 |
Xray | Tyr70, Asp72, Tyr121, Trp279, Phe330, Tyr334, Gly335, Trp432, Met436, Ile439, His440, Gly441, | Asp70, Gly115,Gln119, Ser196, Glu197 Ser198, Pro285,Leu286,Ala328, Phe329, Trp430, Met437, Tyr440 | Tyr121 | His438 | Trp84 | Ala328,Tyr440 |
No. | Binding Energy Kcalmol-1 | Inhibition constant (Ki nmol) | Experimental inhibition % |
|||
---|---|---|---|---|---|---|
AChE | hBChE | AChE | hBChE | AChE | BChE | |
15 | -14.83 | -12.36 | 0.013 | 0.87 | 64.9 | 75.69 |
16 | -15.32 | -10.92 | 0.006 | 9.89 | 71.3 | 65.88 |
17 | -14.37 | -12.36 | 0.03 | 0. 87 | 58.2 | 91.53 |
18 | -15.63 | -12.97 | 0.004 | 0.31 | 79.9 | 94.47 |
19 | -14.85 | -12.64 | 0.013 | 0.54 | 64.1 | 86.65 |
20 | -15.16 | -11.82 | 0.008 | 2.17 | 68.5 | 74.35 |
21 | -10.42 | -11.61 | 23.1 | 3.07 | 50.8 | 72.7 |
22 | -11.9 | -11.03 | 1.89 | 8.22 | 81.3 | 84.06 |
23 | -11.98 | -10.91 | 1.66 | 10.03 | 69.6 | 54.58 |
24 | -14.42 | -11.88 | 0.027 | 1.96 | 74.4 | 80.77 |
25 | -11.24 | -13.79 | 5.78 | 0.08 | 74.4 | 78.73 |
26 | -11.4 | -12.23 | 4.38 | 1.09 | 47.8 | 74.95 |
27 | -9.92 | -11.78 | 53.13 | 2.34 | 60.8 | 79.18 |
28 | -10.97 | -12.75 | 9.07 | 0.45 | 33.8 | 67.57 |
Xray | -14.22 | -11.38 | 0.038 | 4.55 | -------------- | ------------- |
Complex | Hb-residue (Frac %) | ΔGvdw | ΔGelec | ΔGpolara | ΔGSurf b | ΔGMM/GBSA |
---|---|---|---|---|---|---|
(a) | HIE_437@HE2(16.25%) SER_197@HG (11.5%) |
-67.9357 | -18.8145 | 36.9524 | -7.2966 | -57.0944 |
(b) | HIE_435@O (42.25%) | -60.6058 | -8.3630 | 23.8192 | -6.6235 | -51.7731 |
(c) | THR_231@HB (10.25%) THR_232@H (9.5%) LYS_107@O (33.75%) |
-49.274 | -6.0429 | 18.5027 | -6.0780 | -42.8924 |
Complex | Residue Number Residue interaction energy kcalmol-1 |
|||||||||
(a) | Asp69 -2.425 |
Ser78 -2.294 |
Trp81 -3.357 |
Asn82 -1.732 |
Tyr118 -2.301 |
Phe327 -2.227 |
Phe328 -2.342 |
Tyr331 -3.312 |
Hie437 -4.539 |
Tyr439 -1.749 |
(b) | Asp67 -1.703 |
Trp79 -3.81 |
Gln116 -2.185 |
Thr117 -1.58 |
Glu194 -1.538 |
Ala325 -1.947 |
Phe326 -1.613 |
Tyr329 -1.768 |
Met434 -1.21 |
Hie435 -2.594 |
(c) | Gln12 -1.046 |
Tyr71 -3.218 |
Thr72 -1.382 |
Gln73 -5.179 |
Lys107 -1.412 |
Phe108 -2.287 |
Ile110 -0.864 |
Gly230 -1.344 |
Thr231 -2.098 |
Thr232 -1.408 |
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