1. Introduction
Unprecedented phenomena, encompassing anthropogenic climate change, the depletion of vital natural resources, and an escalating global population, have exerted immense pressure on agroecosystems across the globe [
1,
2,
3]. These factors underscore the critical necessity for the development and implementation of novel agricultural methodologies designed to augment both crop and livestock production, thereby ensuring the attainment of global food security objectives. In the context of advancing under-resourced (Resource-Poor; R-P) agriculturalists within communal and small-scale farming systems, particularly in sub-Saharan African nations, considerable obstacles are encountered [
4]. Among these impediments are (i) the scarcity and suboptimal quality of forage, (ii) subpar livestock productivity, (iii) the prevalence of parasitic and infectious diseases, (iv) a dearth of expertise and professional guidance pertaining to pasture management, animal health, and parasite mitigation strategies [
5], and (v) most importantly, rumor-mongering about the entire animal herd’s sickness if one animal gets sick, even if quarantined and treated (personal observation). Therefore, a R-P farmer is in no position to be rewarded with a good animal harvest even though he/she toils hard.
Notwithstanding the challenges encountered, there is a considerable opportunity for promoting sustainable intensification of ruminant livestock production in small-scale and geographically isolated farming systems [
6]. This can be realized through the adoption of mobile-based electronic technologies to monitor animal activity [
7], and computational modeling approaches for precision forage production [
8,
9], which will enable customized animal health and nutrition management strategies. Geospatial technology, also known as Geo-information technology (GT), has emerged as a crucial instrument in the development and implementation of animal health and habitat management decision support systems [
10], specifically designed to improve the management of animal parasites and diseases [
11], optimize forage production [
9], and enhance the carrying capacity of grazing lands, thereby contributing to the overall sustainability and productivity of ruminant livestock systems [
12,
13,
14]. The present investigation specifically focuses on small ruminants, such as ovine and caprine species, given their heightened susceptibility to parasitic infection and their primary management by female and juvenile caretakers who frequently have limited access to veterinary healthcare professionals. The incorporation of GT-based decision support systems can enable small-scale agriculturalists to more effectively oversee and address concerns pertaining to livestock health, nutritional intake, and parasite regulation, in turn to facilitate enhanced productivity and elevate the overall welfare of their animals.
The amalgamation of electronic technology and GT-oriented decision support systems presents an encouraging solution to the obstacles confronted by R-P livestock farmers, particularly in isolated regions where expert assistance and resource availability are constrained. By capitalizing on these innovative instruments, agriculturalists can employ data-informed decision-making processes to augment forage production and animal health, an approach that fosters sustainable intensification of ruminant livestock production, thereby promoting long-term agricultural resilience and prosperity.
Infection with gastrointestinal nematodes (GIN), particularly
Haemonchus contortus, a highly pathogenic blood feeder, has been identified as the most significant animal health constraint for R-P farmers globally, especially of sheep and goats [
15] in Southeast Asia and Africa south of the Sahara [
16]. Failure to farm profitably with small ruminants led in 1917 to what was apparently the first non-herbal anthelmintic [
17], which was subsequently available commercially until the 1960’s in South Africa, despite having consisted initially of the highly toxic arsenic and copper sulphate, with subsequent addition of nicotine. Furthermore, the first comprehensive drenching programs were developed in the 1930’s in South Africa [
18]. While the latter approach was very effective and user-friendly, it unknowingly led progressively to severe anthelmintic resistance to drug after drug that reached the market, to the extent that populations of
H. contortus were discovered with resistance to all five of the unrelated anthelmintic groups in 1997 [
19], and to all seven recently, 2021 (Van Wyk, unpublished).
As drug-based GIN control programs have been shown to be non-sustainable due to a global rise in anthelmintic-resistant GIN of sheep, goats, and cattle [
20] (Kaplan, 2004), effective non-synthetic alternatives, such as the use of targeted selective treatment (TST) techniques, including FAMACHA (
clinical evaluation of the color of the ocular mucous membranes) [
21] and the Five Point Check [
15], and feeding of anti-parasitic tannin-containing fodder legumes [
22,
23] (Shaik et al., 2006; Debela et al., 2012), in integrated parasite management (IPM) systems, were developed subsequently and have shown excellent results [
24] (Terrill et al., 2012). In addition, the fodder legumes listed are not only effective for GIN management, but also for control of
Eimeria spp. [
25,
26], a genus of protozoan parasites that commonly cause severe coccidiosis outbreaks under R-P farming conditions.
Economic impacts due to gastrointestinal (GIT) helminth infection in small ruminants are felt by both the rural poor in developing countries [
16] and by commercial farmers in the industrialized countries of the world [
27,
28]. In the United Kingdom alone, for example, nematode infection is estimated to cost the sheep industry more than 84 million pounds per year [
29], with similar levels of impact worldwide [
30], to the extent that anthelmintic resistance (AR) in small ruminants has instigated a significant transformation in the strategies employed for controlling parasitic infections in such a way as to mitigate the emergence and spread of AR. This change involves moving away from the traditional method of administering anthelmintic treatments to the entire flock or herd, whether performed as a routine measure or in response to observable symptoms of GIN infection. Instead, the focus has shifted towards implementing sustainable IPM approaches [
8,
31,
32], which aim, via individual animal-based vs whole-flock anthelmintic treatment, to provide more targeted and effective long-term control of parasitic infections while minimizing the development of AR.
The sustainable methodology mentioned employs targeted selective treatment (TST) and targeted treatment (TT) strategies to enhance animal health management in a flock or herd by either drenching those animals in need within a group, i.e. TST, or treating the entire group only when there are definite indicators suggesting a heightened risk of disease or potential production loss (TT) [
33] (Charlier et al., 2014) Presently, the adoption of TST and TT approaches among farmers is limited, primarily due to the complexity of their implementation and the associated labor demands, to the extent that even TST, for instance, employing FAMACHA, tested and/or applied in 45 different countries globally, is not applied to a large extent in any of these, even in South Africa, where it was conceived and developed. However, the progressive utilization of these strategies is a crucial component in pursuing sustainable animal health management for R-P farmers [
8].
In conjunction with TST and TT, the utilization of nutrient-dense, bioactive forages, such as the tannin-rich legume sericea lespedeza [SL;
Lespedeza cuneata (Dum.Cours.) G. Don.], can enhance small ruminant gastrointestinal health and provide a viable source of income for R-P farmers [
34] (Hoveland et al., 1990). Sericea lespedeza is a resilient, warm-season perennial forage legume with exceptional drought tolerance, making it well-suited for cultivation in the southeastern United States (U.S.), [
34] (Hoveland et al., 1990), as well as in arid and semi-arid regions of South Africa and other southern African countries [
35] (Mkhatshwa and Hoveland, 1991; Terrill and Mosjidis, 2015). In fact, in the case of Eswatini in Southern Africa, using an automated geospatial model for site-specific forage management (SSFM), Panda et al. [
8] reported that nearly the entire country is well-suited to SL production.
As a forage species with resistance to diseases and insect or pest infestations, SL is ideally suited for sheep, goats, and cattle grazing, primarily due to its high concentration of crude protein (CP) and condensed tannins, which prevent bloating [
34] (Hoveland et al., 1990). This versatile forage thrives in acidic and nutrient-deficient soils, effectively competing with grasses because of its capacity to fix atmospheric nitrogen. Consequently, southern African countries provide suitable conditions for its growth and cultivation [
34,
35,
36]. Hence, the adoption of precision SL forage production through the creation and implementation of a Site-Specific Forage Management Decision Support System (SSFMDSS)[
8,
9] has the potential to facilitate sustainable animal health management strategies for R-P farmers worldwide, particularly within the African continent.
Objectives
The primary aim of this research is to advance and extensively implement a centralized, mobile phone-based automated decision support system (aDSS) for promoting sustainable animal health management and the production of anti-parasitic tannin-rich fodder, in this way ultimately to contribute to the economic growth of R-P farmers and their communities. While the initial focus is on Africa, the project aims to progressively expand its reach to similarly situated regions, such as Southeast Asia. To accomplish this overarching goal, the research will focus on several objectives:
Enhanced modeling and evaluation of methodologies to optimize the growth potential of suitable tannin-rich, anti-parasitic fodder legumes tailored to distinct regions within southern Africa. This will include assessment of various environmental factors and agronomic practices for maximizing fodder production and efficacy.
Employment of RFID Transponder supported telemetry technology to closely monitor animal activity (movement) patterns for detection and prediction not only of disease outbreaks, but also of individual animals unable to cope with common scourges, such as nematodosis disease outbreaks, in a timely manner. This information is then to be integrated with a smartphone application and a centralized software-based model to provide real-time preliminary treatment support and automated data evaluation.
Fostering the education and training of recipient farmers through the aDSS, concentrating on subjects such as sustainable worm management practices. By leveraging the power of mobile technology, this research aims to empower farmers with the knowledge and tools necessary to improve their livestock's health and productivity, with ultimate economic benefit to their communities.
The current investigation, centered on a framework devised by our team for broadening utilization of SL for R-P farmers in Eswatini (previously Swaziland) [
8], aims to establish an automated geospatial model for the proficient cultivation of SL, with its relatively high levels of tannins with bioactive (anti-parasitic) properties (Objective #1). Although initially formulated for Eswatini, this model is anticipated to be readily adaptable for the entire southern African region, offering decision support for cultivating SL efficiently in alignment with the precision agriculture methodology developed in the present research.
A software platform is designed through the integration of epidemiological modeling and surveillance of livestock behavior on remote farms across southern African nations. This will enable the effective implementation of TST and TT strategies to assist farmers in making informed treatment decisions via smartphone applications. The projected outcomes are poised to positively impact the global endeavor to enhance the practical adoption and maintenance of TST and TT approaches among livestock farmers (Objective #2). This is particularly relevant, given that TST is being evaluated or employed in 46 distinct countries across all continents (unpublished observations). Notably, the FAMACHA method of TST has generated significant interest, as evidenced by the 56,300 search results returned in a recent Google search.
While the technical concept of SSFM for SL production DSS (Objective # 1) and the small ruminant sickness determination through the RFID-Transponder based telemetry system through artificial intelligence (AI) application (Objective # 2) will be demonstrated through this study, we are reporting this research while Objective # 3 is under progress and presented piece-meal.
2. Materials and methods
2.1. SSFMDSS for Efficient Production – Eswatini, as Example
The SSFMDSS was designed as an automated model tailored for Eswatini and different states in the U.S., regions known for favorable conditions for SL growth [
8,
9]. Geospatial data were acquired to assess the spatial suitability of the study area for optimal SL production, and processed raster images were analyzed using the criteria outlined in
Table 1. Due to the temperature and precipitation conditions being suitable for SL production in the entire country, these factors were not included in development of the comprehensive SSFMDSS model, but rather soil, land cover, and slope raster images were utilized. Each of the three raster datasets mentioned was individually reclassified to assess suitability for SL production according to the classification ranges specified in
Table 1. Thereupon, the reclassified rasters were integrated using the "Weighted Sum" tool within ArcGIS Pro.
Table 1 displays the assigned weights for each raster during the creation of the comprehensive SL production spatial suitability raster. Utilizing a Delphi modeling approach [
37], it was found that the contributions of the different production parameters to SL production were not equal.
Under the research objectives, the long-term goal of this study is systematically to expand the development process of the SSFMDSS model to encompass the entire southern African region and beyond. This broadened scope will empower farmers with informed decision-making support for planting SL in locations with optimal geographic suitability, leading to maximum production outcomes.
2.2. Animal Remote Monitoring – Necessity and Process
Anthelmintic resistance (AR) in small ruminants poses a significant global challenge to profitable production [
20]. Despite its importance, AR surveillance studies are scarce in Africa [
38], with few documented investigations.
Wanyangu et al. [
39] reported that 50% of 42 surveyed farms in Kenya demonstrated AR to at least one anthelmintic group. Similarly, albendazole resistance was identified on five out of six commercial sheep farms in Zambia [
40]. South Africa, which boasts a relatively well-developed commercial small ruminant sector, particularly in sheep farming, recorded one of the earliest instances of AR on the continent [
41], as well as possibly the first case of resistance of a nematode population to all five of the unrelated anthelmintic groups in 1997 [
19]. Whether the farmers are R-P or commercial, parasitologists widely agree that the current approach to controlling parasites in small ruminants, which relies heavily on chemical-based treatments, must be replaced with a strategy that emphasizes optimal worm management and is compatible with sustainable practices [
42] (Van Wyk et al., 2006).
Targeted selective treatment is a strategic approach based on the understanding that parasitic loads are highly aggregated and markedly over-dispersed in farm animals. Consequently, this strategy focuses on treating only those individual animals judged according to the FAMACHA system, to be incapable of managing the parasitic burden independently, as opposed to the traditional whole-flock treatment during parasitic infections, or an increased emphasis on prophylactic measures, such as more frequent treatments or strategic interventions during periods of low levels of the free-living stages of parasite, i.e., in refugia [
42,
43,
44]. Implementing TST methodologies necessitates the identification of highly susceptible individuals within a flock or herd for targeted treatment [
45].
The Five Point Check© system [
15] has been shown to be instrumental for detection of animals with heightened vulnerability to endoparasites. This system entails the examination of five key areas:
The nose for exudates
The submandibular region for edema (bottle jaw)
The conjunctivae of the eyelids for anemia
The lumbar region for body condition score
The perineum for dag (diarrhea) score
However, for R-P farmers, conducting frequent clinical evaluations (at intervals as brief as seven days) of each animal in any but very small flocks or herds is impractical as regards the time and effort required. As a result, remote monitoring of animals experiencing AR-related illness becomes essential [
21]
Technological advancements have been effectively integrated to reduce labor inputs associated with visually identifying individual animals suffering from parasitic and other diseases, especially on large-scale farms. The implementation of remote electronic systems incorporating accelerometers to associate increased physical activity in animals with estrus behavior (bullying) in dairy cows has been investigated, yielding positive results [
44,
45,
46]. Helwatkar et al. [
47] detailed various sensor types available commercially for measurement of behavioral indicators or parameters correlated with fever, lameness, estrus, mastitis, ovarian cysts, displaced abomasum, ketosis, milk fever, retained placenta, heifer diarrhea, and heifer pneumonia on dairy farms.
Radio frequency identification (RFID) is the foundation for the most widely used sensor technology in automated animal health monitoring and has played a crucial role in the present study. It is a wireless, contactless system that employs radio-frequency waves in different bandwidths to transmit data from an electronic RFID tag or label through a reader (interrogator) to automatically identify and track both animate and inanimate objects [
48]. It is used for various applications, such as logistics, retail, asset management, access control, animal husbandry, and healthcare [
49,
50].
Previously, RFID technology in South Africa has primarily been employed for monitoring high-value game animals on private properties. However, its use has gradually been extended to commercial herds of small ruminants and cattle as a warning system against predator attacks and livestock theft. Given that RFID-based remote monitoring of animal activity may indicate health status and abnormal activity, supporting TT and TST decisions, RFID signals have been analyzed as part of the present project using real-time data acquisition and evaluation.
The study, carried out on South African farms, including both commercial farms and R-P communities, involved the following steps:
i) Establishment of a prototype RFID system designed for remote monitoring and communication of individual animal activity levels, thereby assessing the grazing behavior of sheep in typical small ruminant commercial and R-P enterprises.
ii) Subsequently assessing the performance of this system against various animal behaviors and disease states, with a particular focus on debilitating helminth infections.
iii) Examining data collected over several years (2013-2014) for both healthy and known sick animals to determine transponder signal range values associated with:
Normal sleeping patterns (low signal volatility during sleep hours);
Disease-induced sleep (prolonged sleep duration);
Normal grazing patterns (low signal volatility during grazing hours);
Flight response during attacks or poaching attempts (high signal volatility and increased signal strength); and
- b.
Developing real-time software capable of predicting an animal's health and other statuses based on their signal range. This software is to be integrated into a smartphone app to provide instant alerts to R-P farmers' cellphones when an animal is identified as sick or otherwise disturbed, through server-side analysis.
2.3. Prototype System Set-up
The experimental RFID system designed for these trials consisted of a single solar panel-powered reader operating at an ultra-high frequency band of 868 MHz. This reader was mounted above ground on a five-meter wooden pole, while several active tags, working at the same frequency, were placed on the animals. Each active tag had a radio transceiver, powered by an onboard battery to power the transceiver [
51]. They also featured an integrated A1-type accelerometer sensor for measuring activity levels, based on various simulated hand movements. The accelerometer was configured with a set acceleration threshold of twice the gravitational acceleration (2 g). When, due to simulated movements, the displacement of the accelerometer needle against the transponder casing, , reached or exceeded the 2 g threshold, a value of one was recorded. Conversely, a value of zero was registered if the movements did not meet or surpass the 2 g threshold. The tag subsequently aggregated the recorded values (ones and zeros) over a predetermined reader's 'collection' command signaling interval of one minute. This resulted in an activity score representing the overall activity level per minute per day.
When the signal-to-noise ratio falls below 10 dB, the tag reader is unable to demodulate the signal, resulting in data loss. An active tag is activated upon receiving a "collection" command signal from a reader during an open window. Subsequently, it transmits its unique identifier and any additional data collected from integrated sensors to the reader, which sends a "sleep" command signal to the active tag after successful data transmission. This process enables the active tag to conserve energy (battery life) by only broadcasting its signal when prompted and within the range of a reader [
51]. The activity score is measured on a scale ranging from zero, representing no activity or activity levels below 2 g, to a maximum average of 124, signifying activity levels above 2 g within a one-minute interval. Data obtained from the readers are transmitted using general packet radio services to a web-based server responsible for processing and logging the information. The server generates alarms and reports as outputs, and users can access the data through a website interface (
Figure 1).
In order to calibrate the instrument, controlled experiments were systematically designed and executed to assess the impact of various factors on the data transfer rates (DTR) and the transmitted score magnitudes of the prototype activity level monitoring system. The following factors were investigated:
- (i)
The combined influence of distance (between tags and reader) and tag movement (or lack thereof) on DTR and the magnitude of transmitted values.
- (ii)
The impact of different physical barriers within the reader's interrogation zone on DTR
- (iii)
The effect of background noise on DTR, ascertained indirectly through a comparison of daytime and nighttime DTR; and
- (iv)
The combined effects of the quantity and arrangement (clustered or dispersed) of tags within the reader's interrogation zone on DTR.
The transmission rates of the activity level scores (DTR) and the actual values of the activity level scores derived from hand-simulated movement experiments were recorded and analyzed. Upon completion of the instrument calibration, tags were deployed on sheep based on the rationale that a comprehensive performance evaluation under controlled conditions would support interpretation in field settings and establish a gold standard against which additional variation and error could be measured.
Figure 2 illustrates the instrument calibration process for experimental configuration.
2.4. RFID Transponder Data Analysis for Animal Movement-based Decision Support
Farmers typically implement a standard husbandry management protocol that animals follow near-daily in southern Africa's livestock farming systems, including small ruminant production. In regions where predation significantly impacts livestock farming, animals are typically housed in enclosures, such as kraals or yards overnight and allowed to graze during daylight hours under the supervision of herders. Employing full-day physical monitoring of animals by stockmen as a defense against predators significantly increases labor expenses. It is to be expected that a remote monitoring system capable of profiling the anticipated daily husbandry routines at the individual or flock level, while also remotely notifying stockmen of any substantial deviations from the standard, could not only reduce costs associated with constant direct daily supervision of animals at pasture, but also greatly increase its usefulness.
Such a system, as the above, could detect disturbances due to predator attacks and identify more subtle behavioral changes, such as those resulting from illness or parasitic infections. In the present study involving small ruminant herds, typical animal behavior in South Africa was characterized as follows:
(i) between 7 PM and 7 AM, animals rested in sheds, exhibiting minimal movement signal values.
(ii) at 7 AM, sheep rapidly transitioned to grazing pastures for several minutes, displaying peak movement signal values but during daytime grazing, the animals demonstrated a moderate range of movement-based signals.
In this research, a longitudinal study was conducted, monitoring the activity signal levels of over 20 sheep daily for a period exceeding two years. Notably, a pregnant sheep and a lame goat were observed to examine the variations in movement signals related to these specific conditions. A fundamental graphing technique was used for identifying the range of signals associated with different health statuses and other factors.
With the focus on sequential gathering of time-series data on the activity levels of sheep during typical on-farm behavior the RFID transponder signal data was collected, stored on a server, and processed into a database file to enable the analysis. Employment of change-point analysis enabled identification of distinct transitions between different states, such as:
- i)
Resting and running, where it was hypothesized that there would be a significant increase in activity level scores when transitioning from a resting state to a running state.
- ii)
The onset of lameness and recovery from lameness: The hypothesis suggested that the daily mean activity level score and the activity level score count would decrease upon the start of lameness and then return to previous levels upon recovery.
- iii)
In relation to specific daily husbandry management routines for free-grazing sheep on a farm, the hypothesis was that as the distance between a tagged animal and the RFID reader increased, the hourly activity level scores would decrease, and vice versa. Moreover, the expectation was that hourly mean activity scores would either increase or decrease in relation to the energy requirements of the specific activity—whether grazing at pasture or yarding at night.
By analyzing the data in this manner, the aim was to provide a more precise and detailed understanding of the factors that impact the activity levels of sheep during their daily routines on the farm. This scientific approach made it possible to better observe the relationships between states and activities, ultimately contributing to more informed husbandry management practices.
2.5. Software Development Based on Data Analysis
Python programming was employed to create a real-time decision support system utilizing RFID signal data associated with animal movement, continuously streamed to a designated server. The development of this Python-based software was informed by the data analysis findings outlined below:
Signals within a range of 0 to 40: The animal is resting or sleeping.
Signals within a range of 41 to 90: The animal is engaged in normal grazing behavior.
Signals with a range of 91 and above. The animal is running, as is to be expected during poaching incidents or predator attacks, or is being herded on the way home or to pasture. In this way, it becomes possible for farmers to keep an eye on animal management at home, for instance while away, for instance to check on speed of herding and the like.
Additionally, specific timeframes were established to categorize animal activities, :
Signals that deviate from the expected range and time parameters are considered abnormal, potentially indicating that the animal is experiencing health issues. The Python-based software aims to enhance decision-making and improve overall animal health management practices by leveraging these data-driven insights.