3.1. Proteomic Biomarkers
Emerging protein biomarkers have demonstrated the potential to detect early-stage PC. Leucine-rich alpha-2 glycoprotein 1 (LRG1) is a glycoprotein that is part of the leucine-rich repeat (LRR) family of proteins. Its primary functions include an involvement in protein interactions, signal transduction, and cell adhesion and development, as well as the facilitation of new blood vessel formation. An elevated expression of LRG1 has been associated with a poor survival and an advanced tumor stage. Moreover, LRG1 has been implicated in promoting the viability, proliferation, and invasion of pancreatic tumor cells [58-62]. Matrix metalloproteinases (MMPs) form a group of proteases recognized for their capability to degrade extracellular matrix components, including gelatinase B (MMP-9), which is acknowledged for digesting the primary constituent of the basement membrane (type IV collagen). The degradation of the extracellular matrix and basement membranes is pivotal in cancer invasion and metastasis, indicating that changes in the matrix metalloproteinase (MMP) activity within the tumor environment likely play a role in the progression of PC. However, despite its role, circulating MMP-9 has been reported as an inferior marker for PC when compared to CA19-9. Even when both markers are combined, the diagnostic accuracy does not improve [63]. The clinical relevance of MMP-9 concerning the survival, metastasis, and tumor stage has been observed diversely in various studies [64]. Tissue inhibitors of metalloproteinases (TIMPs) belong to another class of metalloproteinases capable of binding to MMPs and, thereby exerting inhibitory and activating effects on MMPs and potentially being involved in tumor progression [63]. TIMP-1, which is typically expressed to regulate cell proliferation and apoptosis, has been identified as a potential biomarker for a PC diagnosis, with a sensitivity of 47.1%, a specificity of 69.2%, and an AUC of 0.64 [63,65]. Transthyretin (TTR), a carrier of thyroid hormones (thyroxin and tri-iodothyronine), has been found to increase by more than 1.5-fold in the serum of PDAC patients compared to normal controls. This increase is associated with a sensitivity of 90.5%, a specificity of 47.6%, and an AUC of 0.75 [66]. Intercellular adhesion molecule 1 (ICAM-1), a glycoprotein that plays a role in cell adhesion and act as a macrophage chemoattractant, has been assessed in multiple studies as a potential early diagnostic tool for PC. By using a cut-off value of 878.5 u/mL, ICAM-1 exhibited a sensitivity, specificity, and AUC of 82%, 82.26%, and 0.851, respectively [67]. Osteoprotegerin (OPG), known for its role in bone homeostasis, has emerged as a potential biomarker for the early detection of PC. Shi, et al. reported that OPG is upregulated in cancerous pancreatic tissue, with an even higher expression observed in patients experiencing new-onset diabetes. [68-70].
Chemokines, also known as chemotactic cytokines, constitute a group of proteins that regulate the migration, adhesion, growth, activation, and differentiation of leukocytes. They are categorized into four groups based on the key cysteine positions: CC, CXC, CX3C, and XC [71,72]. Chemokines play a pivotal role in the modulation of inflammation, infection, immune responses, tissue injury, and various pathological processes, including the development of malignancies [73,74]. The expression of the CXCL-1 chemokine in PC tissues, in both the cytoplasm and stroma, was notably elevated (41.88% and 40.63%, respectively) compared to normal tissues (p= 0.008, and p = 0.002, respectively). The CXCL-1 expression in the cytoplasm was associated with the tumor status, nodal spread, and distant metastasis. Additionally, a high CXCL-1 level in the stroma was correlated with perineural invasion, the tumor classification, and the TNM stage. Elevated CXCL-1 has been identified as an independent prognostic factor for PC and may serve as a potential therapeutic target and prognostic marker [75]. Zhang et al. reported an association between CXCR-4/CXCL12 and tumor invasion and metastasis. Their study investigated the relationship between the expression of CXCR-4/CXCL12 and vascular endothelial growth factor-C (VEGF-C), Ki-67, matrix metalloproteinase 2 (MMP-2), and β-catenin. The expression of CXCR-4 (CXCL12) was elevated in PC cells (56.7% (86.7%)), adjacent non-cancerous cells (50.0% (85.0%)), and the lymph nodes (53.3% (80.0%)) in comparison to normal controls. [76]. CCL-20, a chemotactic cytokine responsible for recruiting inflammatory cells, has been demonstrated to enhance the migration of PC cells. Kimsey et al. demonstrated that increasing the CCL-20 concentration led to a dose-dependent increase in the PC invasion of type IV collagen [77]. Yet, there is a limited understanding of the efficacy of assessing chemokine concentrations in the detection of early-stage PC. There is currently a lack of clinical research investigating chemokines as early biomarkers for the disease.
Several studies have proposed the use of multiple biomarkers or biomarker panels for early diagnosis, as outlined in
Table 1. The use of a single tumor marker is reported to have a high probability of false positives and false negatives [78,79]. Park, et al. were able to report a sensitivity of 82.5%, a specificity of 92.1%, and an AUC of 0.93 (
p < 0.01) when using a proteomic multi-marker panel that included LRG1, TTR, and CA19-9, which were 10% higher compared to the sensitivity, specificity, and AUC obtained when using CA19-9 alone [80]. Another study that employed a panel of three biomarkers (CA 19-9, ICAM-1, and osteoprotegerin (OPG)) successfully discriminated healthy patients from those with PDAC, achieving a sensitivity of 88%, a specificity of 90%, and an AUC of 0.93 [81]. In a Korean study, Kim et al. developed a new biomarker combination consisting of apolipoprotein A (ApoA1), CA125, CA19-9, the CEA, ApoA2, and TTR, with a sensitivity, specificity, and area under the curve of 93%, 96%, and 0.993, respectively [82]. Interestingly, all six biomarkers used are part of a pan-diagnostic kit that is commercially available in Korea to diagnose seven cancers:, hepatocellular carcinoma, breast cancer, lung cancer, gastric cancer, colon cancer, prostate cancer, and ovarian cancer. In a case-control study conducted by Mellby et al., the differentiation between stages I and II and normal controls yielded a sensitivity and specificity of 94% and 95%, respectively. The biomarker signatures, comprising 29 biomarkers, demonstrated an AUC of 0.96 [83].
Micro-RNA (miRNA) is single-stranded RNA that was discovered in 1993 and that, consists of 19-25 nucleotides [84,85]. Although they are not translated into proteins, miRNAs, which are a type of non-coding RNA, play a crucial role in the development and function of the normal human body, influencing processes such as cell division, differentiation, apoptosis, and angiogenesis. miRNAs can be classified based on their location (cytoplasmic or nuclear) and length, with small (<200 base-pairs) or long (>200 base-pairs) miRNAs [45,86]. miRNAs have been associated with tumorgenesis and progression, impacting apoptosis escape, the epithelial-mesenchymal transition (EMT), invasion, and the clinical outcomes. The EMT is a phenomenon wherein epithelial cells undergo a transformation, losing their cell-to-cell adhesion and acquiring invasive characteristics akin to mesenchymal cells. This process plays a crucial role in the metastasis of PC [87,88].
The expression of miRNAs is influenced by DNA alterations such as deletion, amplification, translocation, and integration during the process of carcinogenesis. Consequently, certain cancers may result in the detection or overexpression of miRNAs, making these miRNAs potential biomarkers [45]. Various methods, including reverse transcription-quantitative PCR (RT-qPCR), in situ hybridization, next-generation sequencing, and miRNA microarrays, can be employed to detect miRNAs in blood serum, plasma, cells, and tissues [29,88,89]. In a comprehensive four-stage study utilizing qRT-PCR assays, Zhou et al. identified a six-miRNA signature (miR-122-5p, miR-125b-5p, miR-192-5p, miR-193b-3p, miR-221-3p, and miR-27b-3p) that was capable of distinguishing PC patients from normal controls, achieving an AUC of 0.977 (95% CI: 0.894–0.979; sensitivity = 88.7%; and specificity = 89.1%) [90]. Additionally, they reported that miR-125b-5p could serve as an independent biomarker for predicting the survival rates of PC patients.
Serum miR-25 has been reported to be overexpressed in patients with PDAC. Zhang, et al. reported that miR-25 in pancreatic duct epithelial cells can be maturated in an excessive amount by cigarette smoke condensate (CSCC) [91]. High levels of miR-25, and miR 25-3p suppress PH domain leucine-rich repeat protein phosphatase 2 (PHLPP2), which results in the malignant phenotype of pancreatic cells via the activation of oncogenic AKT-p70S6K signaling. The overexpression of miR-25-3p is correlated with a worse prognosis in PC patients [91]. The overexpression of miR-25 has also been reported in gastric cancer, lung cancer, and cholangiocarcinoma; other studies have suggested that miR-25 serves as a tumor sup-pressor in thyroid cancer and colon cancer [92-96]. When miR-25 was combined with CA19-9 to differentiate PC patients from normal controls, an AUC-ROC of 0.985, a sensitivity of 97.5%, and a specificity of 90.11% were achieved. For the identification of stage I and II tumors, the combination of miR-25 and CA19-9 accurately detected 40 out of 42 patients (95.24%). These results imply that miR-25 could potentially function as a novel biomarker for the early detection of PC [97].
Schultz et al., successfully identified two panels of miRNAs that are dysregulated in PC [98]. Panel 1 consisted of miR-145, miR-150, miR-223, and miR-636 and Panel 2 consisted of miR-26b, miR-34a, miR-122, miR-126, miR-145, miR-150, miR-223, miR-505, miR-636, and miR-885.5p. These miRNA panels were capable of distinguishing PC patients from healthy subjects. Using Panel 1, the study attained an AUC of 0.86 (95% CI: 0.82-0.90), a sensitivity of 0.85 (95% CI: 0.79-0.90), and a specificity of 0.64 (95% CI: 0.57-0.71). Panel 2 yielded an AUC of 0.93 (95% CI: 0.90-0.96), a sensitivity of 0.85 (95% CI: 0.79-0.90), and a specificity of 0.85 (95% CI: 0.80-0.85). Interestingly, when combined with CA19-9, both panels were able to detect PC stages IA-IIB with the following performance; Panel 1 with an AUC of 0.83 (95% CI: 0.76-0.90) and; Panel 2 with an AUC of 0.91 (95% CI: 0.86-0.95). In a similar investigation conducted by Johansen et al., four panels were employed, namely Panel I (comprising seven miRNAs), Panel II (comprising nine miRNAs), Panel III (comprising five miRNAs), and Panel IV (comprising twelve miRNAs). The patients diagnosed with PC in Panels I and II were contrasted with a combined group of individuals with chronic pancreatitis and those who were healthy. Conversely, the patients with PC in Panels III and IV were compared specifically to healthy participants (refer to
Table 2). Panels I and III were designed to be robust to technical variation, and Panels II and IV included all the significant miRNAs from a multivariate model, thus representing the upper limit in terms of training [99]. The best panel for discriminating stages I and II PC from healthy subjects was Panel II combined with serum CA19-9, which exhibited a sensitivity of 0.77 (0.69-0.84), a specificity of 0.94 (0.90-0.96), and an AUC of 0.93 (0.90-0.96). It is noteworthy that the aforementioned studies did not share any miRNAs in their panels, except for miR-25.
In addition to their presence in serum and pancreatic tissue samples, miRNAs are also present in feces, urine, and saliva. MiR-143, miR-223, and miR-30 can be detected in urine even in stage I cancer. The joint utilization of miR-143 and miR-30 exhibited a sensitivity and specificity of 83.3% and 96.2%, respectively, with an AUC of 0.92 [100,101]. Assessing the miR-1246 and miR-4644 levels in saliva has been studied to differentiate PC patients from healthy controls, yielding AUC values for the ROC curves of 0.814 (p = 0.008) and 0.763 (p = 0.026), respectively. Combining miR-1246 and miR-4644 increased the AUC to 0.833 (p = 0.005) [102]. Salivary miRNAs were reported to be stable due to the protection provided by exosomes. In the stool samples of PC patients, miR-21 and miR-155 exhibited overexpression (p = 0.0049 and p = 0.0112, respectively), while miR-216 showed lower expression levels (p = 0.0002). The combination of miR-21, miR-155, and miR-216 for PC screening demonstrated a sensitivity of 83.3%, a specificity of 83.3%, and an AUC of 0.866 (95% CI: 0.7722-0.9612) [103].
3.2. Circulating DNA
Circulating tumor DNA (ctDNA) was first described in 1948, and it has been postulated that the DNA release via the necrosis, apoptosis, and lysis of circulating tumor cells (CTCs) and micro-metastasis contributes to the presence of ctDNA [104-106]. ctDNA comprises 170-181 base pairs and is present in body fluids at very low concentrations, ranging from 1 to 100 ng/mL, depending on the type and tumor burden [79,106]. Due to its low concentration in body fluids, detecting ctDNA requires methods with a high analytical sensitivity and specificity. The methods used to detect ctDNA include real-time PCR, automatic sequencing, mass spectrometry genotyping, next-generation sequencing (NGS), and digital PCR platforms (such as digital droplet PCR, (ddPCR)). The sensitivity of these methods greatly varies, ranging between 0.01% and 15% [107-110].
ctDNA levels have been reported to be elevated in patients with PC. In a study by Shapiro et al., ctDNA levels as low as 25 ng/mL were detected by utilizing radioimmunoassay DNA quantification, with DNA levels exceeding 100 ng/mL being considered the upper normal limit [111]. The KRAS gene has received significant attention in terms of ctDNA mutations because it is highly mutated in PC [108]. An assessment of samples from 26 PC patients for 54 genes revealed that KRAS, TP53, APC, FBXW7, and SMAD4 may be potential markers for detecting pancreatic ductal adenocarcinoma (PDAC) [112]. A ctDNA KRAS mutation for the diagnosis of PDAC was reported to have a sensitivity of 47% and a specificity of 87%, and when combined with CA19-9, it had a sensitivity of 98% and a specificity of 77% [113]. On the contrary, Cohen et al. reported that CA19-9 outperformed ctDNA for the detection of stages I and II PDAC [114]. The results of studies on ctDNA have been varied. In a study of 26 cancer patients utilizing next-generation sequencing (NGS) technology, KRAS, TP53, APC, FBXW7, and SMAD4 mutations were found in 90% of the matched tumor biopsies. The diagnostic accuracy was reported to be 97.7%, with an average sensitivity of 92.3% and a specificity of 100% across all five investigated genes [115]. Conversely, Pishavian et al. reported an overall concordance of only 25% between blood and tissue samples using NGS assays, and KRAS mutations were detected in only 29% of the blood samples compared to 87% in the tumor tissue biopsies [116]. Similarly, in another study evaluating the correspondence of KRAS mutations in PC tissue and ctDNA, researchers reported that KRAS mutations were detected in 70% of neoplastic tissue samples, but none were found in ctDNA samples [117].
Currently, the use of ctDNA as a diagnostic tool is limited due to the low amount of detectable ctDNA in the early stage of the disease [118]. However, ctDNA has shown a correlation with the tumor burden and holds promise as a tool for predicting the treatment response and for monitoring in advanced cases [119]. Chen et al. found a correlation between KRAS-mutant ctDNA and both the time to progression and the overall survival. The detection rates in patients with non-elevated CA19-9 were 93.7% and 86.4%, respectively. KRAS mutations were also able to correctly predict 80% of the patient response to treatment [120]. Patients with KRAS-mutant ctDNA were reported to have 6.1 months of disease-free survival in comparison to 16.1 months in patients that had no such mutation, with overall survival times of 13.3 and 27.6 months, respectively (p < 0.001) [121]. Similarly, a recent study using digital droplet PCR (ddPCR) reported that KRAS-mutated ctDNA was associated with a poorer prognosis of, 170 days versus 489 days; notably, the presence of a KRAS mutation in tissue DNA did not show a similar association with survival rates [122]. A specific subtype of KRAS mutation, p.G12V, was linked to a shorter survival time compared to p.G12D, p.G12R, or wild-type variants [122]. Serial plasma testing of KRAS-mutant ctDNA in advanced PDAC patients undergoing chemotherapy appears to provide more effective monitoring than CA 19-9 [123]. The longitudinal monitoring of ctDNA has been reported to predict a patient’s response to therapy and disease progression around 5 months earlier than standard radiological imaging and CA19-9 [124,125].
The application of ctDNA is currently restricted due to the inconsistent concordance between tissue biopsies and liquid biopsies, which range widely from 48% to 100% [121]. Additionally, the lack of standardized protocols, variations in the reliability of the ctDNA detection methods across studies, and limited validation studies further contribute to the limitations [108]. Moreover, given that mutations are not exclusive to PC and can be observed in other tumor entities, there are challenges in achieving high diagnostic sensitivity and specificity [79].