3.1. CHI3L1 as an Enhancer of Bacterial Adhesion and Invasion on Colonic Epithelial Cells
The interplay between the intestinal microbiome and the gastrointestinal (GI) tract has been extensively presented as bidirectional [
103]: reciprocal signaling occurs between the bacterial flora and the mucosal immune system, thus modulating gut homeostasis. Despite inter-individual differences, inappropriate interactions between enteric microorganisms and host cells disrupt the intestinal immune balance, leading to acute and chronic inflammatory outcomes.
The pathophysiology of IBD is an example of how the proliferation of bacteria, primarily commensal, and gastrointestinal dysbiosis can play a pivotal role in the initiation and/or perpetuation of chronic disorders.
It has been predicted that the altered expression of specific receptor(s) on host intestinal epithelial cells might enhance the interaction with bacterial components under inflammatory conditions [
104]. Among these molecules, CHI3L1 has been targeted as a potential enhancer of bacterial adhesion and invasion on/into CECs [
7,
105].
Although CHI3L1 doesn’t possess any enzymatic activity, it retains the ability to bind to chitin, β-1, 4 N-acetylglucosamine (GlcNAc), and chito-oligosaccharide, and therefore named as chitinase-like proteins (CLPs). Microbial chitinases, which are generally associated with chitinolytic activity for nutritious purposes, have been recently linked to bacterial virulence. Although mammals do not synthesize chitin,
L. Pneumophila and
V. Cholera chitinases have been found responsible for promoting bacterial colonization of lungs and intestine, respectively [
106]. It’s conceivable that the presence of a chitin-binding motif on bacterial chitinases favors bacterial adherence to the surface of host epithelial cells under inflammatory conditions [
107]. This has been confirmed for both CBP21 of
Serratia Marcescens and ChiA of
AIEC which interact with CHI3L1 to attach to intestinal epithelial cells [
8].
The post-translational structure of CHI3L1 presents an N-glycosylated protein with two molecules of GlcNAc at the 60th asparagine residue in human [
108]. It’s noteworthy how the extent of glycosylation of both host and microbiomes changes in the context of bacterial infection. The resulting glycome becomes an expression of highly complex glycosylated ligands which serve as receptors and primary sites of contact for bacteria [
109]. In particular N-linked surface glycoproteins expressed on host cells are likely to be a target for bacterial chitinases. For instance,
S. Typhimurium links to sugar compounds on apical host cells with high specificity, thus showing preference among the glycosylated moieties.
Moreover, alterations of the glycome occur before bacterial entry which proves them to be a direct consequence of host-microbial interaction [
110]. Accordingly, it’s possible to infer that N-glycosylation of host CHI3L1 is one of the critical steps to bacterial binding. Glycosylation of epithelial cells highly depends on the integrity of the sub- and supra-mucosal environment. Flaws in mucus glycosylation can yield a degraded mucus layer and less efficient segregation between host and intact bacteria [
111,
112] [
Figure 2]. In addition, glycosylated CHI3L1 plays a key role for host-microbial interactions since the mutation in CHI3L1 60th or 68th asparagine residue in human or mice, respectively, result in the reduction of bacterial adhesion to colonic epithelial cells [
9] [
Figure 2].
Mucosal disruption is a typical finding in IBD cases as well as in the context of a systemic inflammatory response [
113]. Specifically, it has been documented that CHI3L1 is overexpressed in the colon tissue upon bacterial colonization of severe burn injuries. Again, the interruption of the mucosal barrier promotes bacterial contact with the underlying epithelium, thus accounting for increased chitinase levels. It’s liable that the presence of host ligands for microbial chitinases (which contains chitin-binding proteins) also modulates the transcriptional patterns of bacteria. This may account for the release of virulence factors and the internalization of pathogenic microbes.
Following adhesion, the invasion of bacteria into the colonic epithelium is the end result of complex cellular mechanisms involving both sides of the equation. The release of pro-inflammatory cytokines, primarily TNF-α, IL-1β, and IL-6, from invasive commensal bacteria fosters a comparable expression on host cells. To this extent, it has been established that these proinflammatory factors, especially TNF-α, can induce the expression of CHI3L1 mRNA and late secretion of CHI3L1 protein. In turn, CHI3L1 can activate the NF-κB signaling pathway which produces the same pro-inflammatory cytokines. This feedback loop further highlights how the host immune system and the microbiota are intrinsically related.
Another key step to bacterial penetration is the polarization of macrophages. The CHI3L1-driven M2 transition is part of a compensated anti-inflammatory response. However, in a dysregulated environment, the M2 presence hinders the pro-inflammatory defenses owing to poor antigenic properties. This leads to an equally poor bacterial clearance because the engulfed pathogens reside internalized within the mucosa. Interestingly bacteria, like
Staphylococcus. Aureus, exploit this mechanism to evade immune recognition [
114]. Others, such as adherent invasive
Escherichia coli (AIEC), keep replicating within macrophages. This data indicates how commensal bacteria can both start and uphold enteric inflammation.
3.2. Interactions between CHI3L1 and Bacterial Chitinase (ChiA) in Escherichia coli
E. coli is one of the major representatives of commensal bacteria producing bacterial chitinase. Particularly, AIEC is normally present in the intestinal flora of healthy individuals but shows high levels of virulence in CD patients. This finding suggests that AIEC strains display pathogenicity in susceptible hosts via increased adhesion to host cells. The disrupted mucus layer, typical of IBD, and the CHI3L1 upregulation make enteric epithelial cells accessible to AIEC strains [
Figure 2]. Indeed, AIEC’s primary interaction consists in binding the host CHI3L1 via the bacterial chitinase, ChiA. Particularly, it has been recorded that ChiA overexpression occurs in AIEC-strains rather than non-AIEC strains, thus accounting for microbe-specific features [
115].
To firmly adhere to intestinal epithelial cells, type I pili and flagella are usually required. However, it has been demonstrated that ChiA expression strongly affects the invading ability of AIEC. By comparing ChiA knockout and wild-type AIEC (reference strain LF82), it’s clear how the level of bacterial virulence decreases in the former compared to the latter [
9]. Interestingly, ChiA does not change the gross structure of the microbe. This observation suggests that ChiA is critical in AIEC adherence as much as its membrane extensions. Similarly to mammalian chitinases, the genotype of ChiA can influence the rate of invasion of
E. coli into host CECs. The presence of polymorphisms in the ChiA-chitin-binding domains allows clustering of
E. coli strains according to their relative pathogenicity, which is measured in terms of adhesiveness to CECs [
9].
Multiple factors compromise the host microenvironment and favor bacterial access to intestinal epithelium. First of all, host macrophages release pro-inflammatory cytokines in conditions of chronic inflammation. It is noteworthy how inflammatory cytokines, such as TNFα, IL-1β, and IL-6 foster a greater expression of CHI3L1 and, thus, a wider site of contact for bacterial chitinases [
116]. Additionally, AIEC induces submucosal macrophages to yield pro-inflammatory mediators, thus fueling a vicious cycle of inflammation. To this extent, the main bacterial advantage may consist in promoting intestinal permeability, by increasing CHI3L1 expression, and intra-macrophage replication within the submucosal space.
The post-translational N-glycosylation of CHI3L1 is crucial for an efficient host-microbe interaction [
9] [
Figure 2]. In addition, the expression of glycosylated moieties, namely CEACAM6, results necessary for AIEC adhesion. Similarly to CHI3L1, CEACAM6 serves as a binding receptor for the bacterial appendices and is expressed upon TNF-α stimulation following AIEC infection [
104]. This data confirms how commensal bacteria can sustain colonization by exploiting modification of host cells by glycation [
9,
104].
3.3. Potential Role of CHI3L1 as an Inducer of Intestinal Dysbiosis
The alteration of the enteric microbiota is associated with a wide variety of gastrointestinal diseases. Intestinal dysbiosis may present as the source, the result, and, most frequently, the sustainer of chronic inflammatory states [
4,
15]. The composition of gut microbiota is modulated by several factors, some of which are unmodifiable such as the immune system, the enteric mucosa and the microbiome. This finding is supported by the pathophysiology of IBD, which usually presents mucus disruption, immune dysregulation and dysbiosis [
4,
15].
Any imbalance among the bacterial taxa can lead to reduced microbial diversity and predominance of pathogenic strains. These favor disease development and severity, by impairing intestinal homeostasis and promoting immunosuppression and cancer cell growth. In this context, the host-microbial interaction plays a central role. It has been demonstrated that CHI3L1 enhances bacterial adhesion in susceptible hosts. Interestingly, it’s possible that CHI3L1 preferentially engages pathogenic (e.g.,
S. typhimurium) and potentially pathogenic (e.g., AIEC) strains rather than non-pathogenic ones (e.g., DH5α) [
9,
13,
117]. This mechanism would reinforce the extent of microbial penetration within colonic epithelium and further contribute to intestinal dysbiosis. In addition, the formation of a bacterial biofilm on the surface of CECs is related to the pathogenic transition of certain bacterial strains. This finding suggests that the loss of mucosal protection and the increased intestinal permeability induce the intramucosal replication of intact bacteria that are normally excluded from colonic tissue. Altogether these events contribute to shaping intestinal flora and affecting immune tolerance.
Mice remain some of the best animal models to investigate changes in the microbiota presentation. It has been shown that, following bacterial infection, chemically-induced colitis or immune deficiency, mice enteric flora develops a lower number of total commensal bacterial as well as a reduced richness in resident strains with respect to normal controls [
118]. This data underlies how different sources of inflammation can account for intestinal dysbiosis.
IBD is one of the most representative cases of chronic intestinal dysbiosis. Despite the multifactorial nature of the disease, the alteration in the microbiota composition is rather relevant. Most of the bacterial phyla in a healthy intestinal flora are
Firmicutes, Bacteroidetes, Proteobacteria, and
Actinobacteria. In IBD patients
Bacteroidetes and
Proteobacteria are more abundant whereas
Firmicutes are reduced [
119]. Moreover, the microbial richness diminishes with evidence of predominant strains and clusters, such as
Enterobacteriaceae and
Bilophila for Proteobacteria and
Faecalibacterium prausnitzii for Firmicutes. This background might lead to metabolic changes that affect the whole gut homeostasis. In addition, the amount of mucus-degrading bacteria, such as
R. gnavus and
R. torque, is significantly higher in IBD with respect to normal controls [
120]. Thus, contributing to reduced mucus protection and increased epithelial exposure to commensal bacteria.
Overall, the data above suggests the potential role of host CHI3L1 in shaping the intestinal biome and favoring the penetration of potentially pathogenic bacteria in normal flora under inflammatory conditions. This evidence suggests a prospective therapeutic target for the treatment of IBD by inhibiting CHI3L1 expression, in the attempt to exclude the entry route of invasive species from the aftermath of intestinal dysbiosis.