Based on family studies, ASD is recognized as the most heritable neurodevelopmental disorder. Since the monozygotic twin study by Barley et al. (1970), which found a concordance of autism between 60-90% in monozygotic twins and 5-40% in dizygotic twins, the heritability and contribution of genetics to ASD has been verified [
3,
17,
18,
19]. A large population-based study conducted recently on more than 2 million individuals and 680,000 families across 5 countries (Denmark, Finland, Sweden, Israel, and Western Australia), estimated the heritability for ASD to be 80 % [
20]. Also, Butler and colleagues compiled approximately 800 genes linked to ASD, arranged them in alphabetical order, and included high-resolution human chromosome ideograms to facilitate visualization of the specific location and arrangement of ASD-associated genes [
21].
In reality, ASD consists of a group of heterogeneous genetic neurobehavioral disorders associated with developmental impairments in social communication skills and stereotypic, rigid, or repetitive behaviors. Novel gene-protein interactions with pathway and molecular function analyses have identified at least three functional pathways including chromatin modeling, Wnt, Notch and other signaling pathways and metabolic disturbances involving neuronal growth and dendritic spine profiles. An estimated 50 % of individuals with ASD have chromosome deletions or duplications (e.g., 15q11.2, BP1-BP2, 16p11.2 and 15q13.3), resulting in behavioral and psychiatric conditions [
21]. Hence, chromosomal microarrays may be applied with high diagnostic yield [
21,
22]. In addition, pharmacogenetics testing may be used to guide the selection of medications in ASD, a technique which is also used in Down syndrome, Fragile X syndrome (FMR1 gene) and the PTEN gene mutation, which encodes a phosphatase associated with extreme macrocephaly[
23] .
2.1. Epigenetics
Epigenetics, as mentioned above, is a term that refers to DNA modifications that alter gene expression without making any changes to the genetic backbone [
24] . It is a process that regulates gene expression, through modifications of DNA bases and changes to DNA packaging in response to environmental factors and behavioral conditions [
24]. Epigenetic changes are potentially reversible but factors regulating reversibility are not yet fully understood. Through epigenetics, genes can be fully silenced, under-expressed, or overexpressed [
24] . Additionally, epigenetics relates to a causal chain linking genetics, environmental exposure, and disease development. Epigenetic changes occur often during an organism's lifetime and may be transmitted to the next generation [
25]. Also, numerous factors may cause epigenetic changes, such as breastfeeding and maternal care, physical activity or inactivity, hyperglycemia, mitochondrial dysfunction, aging, and menopause [
25] . We have previously hypothesized that epigenetic state may be influenced by pharmaceutical drugs [
26], and have detected DNA methylation changes in a human cell line in response to the widely-used antidepressant, citalopram [
27]. Epigenetic state may also be influenced by integrative medicine [
28]. Moreover, epigenetics may contribute to the development of metabolic diseases such as diabetes [
29,
30].
DNA, with its phosphate groups, is negatively charged and packaged around a positively charged histone protein octamer that contains 2 copies of histone proteins H2A, H2B, H3 and H4. DNA loops twice around the histone octamer forming the functional unit of DNA, the nucleoprotein called the nucleosome [
31,
32,
33]. DNA is thus packaged in a “beads on a string” pattern. H1 is the last histone protein that binds to the nucleosome and linker DNA, thereby stabilizing the chromatin fiber. Linker DNA is a double-stranded DNA situated in between two nucleosome cores that, in association with histone H1, holds the cores together. It was recently revealed that histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory [
34]. Thus, Linker DNA is considered as the string in the "beads and string model", on the chromatin. Chromatin is the condensed form in which DNA exists to fit in the nucleus. The aggregation of chromatin results in the formation of chromosomes. In its loose shape, chromatin is transcriptionally active and referred to as euchromatin as opposed to the highly condensed, transcriptionally inactive state called heterochromatin [
32].
There are currently three well-understood factors regulating epigenetic expression:
Modifications to histones that either make the chromatin available (euchromatin state) or unavailable (heterochromatin) for transcriptional processes [
24,
35,
36]. In this context, three different mechanisms have been described. First, is histone methylation that usually silences DNA expression. Second is histone acetylation that relaxes DNA coiling, increasing its transcription. Third is the reverse process, histone deacetylation that removes an acetyl group and further tightens DNA coiling, thus decreasing gene expression.
DNA methylation [
37,
38], is a reversible mechanism wherein methyl groups (–CH3) are delivered to cytosines positioned in CpG (5′ -cytosine-phosphate-guanosine-3′ ) nucleotides turning these cytosines into 5-methyl cytosines (5mC) [
39]. When methylation occurs in cytosine-phosphate-guanine (CpG) islands in the gene promoter, interaction between the DNA and transcription factors is reduced and the gene is silenced [
3,
40]. In neural cells, either hypermethylation or hypomethylation of DNA can affect learning or memory. Indeed, dysregulated methylation has been linked to neurodevelopmental disorders such as ASD [
39].
Gene silencing may also occur via non-coding RNA (ncRNA), referring to RNA sequences that are transcribed but not translated, hence not leading to protein synthesis [
41]. More than 89% of non-ribosomal RNA transcripts are non-coding [
41]. After years of being considered as junk RNA, recent studies emphasize the crucial role of ncRNA in modulating the expression of the genome [
42].
2.3. Glial Cells -ASD
Although most studies on ASD have focused on neuronal pathological changes, including increased cell proliferation, accelerated neuronal differentiation, impaired synaptic development, and reduced neuronal spontaneous and synchronous activity, more and more research has found that glial cells may also be of both pathological and therapeutic potential.
Glial cells represent the largest population of cells in the human brain, as they outnumber the neurons 10-fold [
48,
49].These cells perform pivotal functions such as energetic support for neurons [
50], regulation of neurotransmitters [
51,
52,
53], formation of the blood-brain barrier (BBB) [
54,
55], detoxification [
56,
57], development and remodeling of synapses[
58,
59,
60] , control of fluid/electrolyte homeostasis [
61], neuroendocrine function [
62] innate immunity response[
63,
64], control of metabolism [
65,
66], and myelination [
67,
68]. Thus, glial cells play a key role in maintaining homeostasis, disruption of which can lead to neurodevelopmental, neuropsychiatric, and neurodegenerative diseases [
68,
69,
70,
71,
72,
73]. In the central nervous system (CNS), 4 major subsets of glial cells (microglia, astrocytes, oligodendrocytes and synantocytes or NG2 cells) have been identified. A brief description of each with relevance to ASD is discussed below.
Microglia, constituting 10% -15% of all CNS cells, act in the innate immune response, and play a key role in neuroinflammation. They are considered the resident macrophages of the CNS, with a vital role in maintaining homeostasis due to their ability to remove debris, regulate neurogenesis, participate in formation and elimination of neuronal synapses, and control the number of neuronal precursor cells[
74,
75,
76,
77] .
As resident immune cells, microglia can polarize into different proinflammatory (M1) or anti-inflammatory (M2) phenotypes. M1 microglia activation leads to BBB dysfunction and vascular “leakage”, whereas M2 microglia act as protectors of the BBB. Under physiological conditions, microglia readily and continuously monitor the CNS microenvironment to quickly remove debris and provide repair at the damaged area. However, their overactivation is the primary cause of neuroinflammation and cellular death [
74,
76,
78].
Recently, it has been proposed that many pathological phenotypes of ASD may be caused by microglial abnormalities. Specifically, single-cell data have shown differences in gene expression patterns between fetal and adult microglia, indicating that microglia play an important role in CNS development. More and more studies have found that damage to microglia plays a key role in ASD pathology. This is because many pathological phenotypes of ASD are believed to be caused by abnormalities in immune cells, specifically the microglia. Mouse models have determined that damage to microglia affects synaptic pruning, leading to deficits in social behavior. Thus, mechanisms related to microglial abnormalities in ASD may become a promising direction for preventing ASD and/or developing therapeutic drugs[
78,
79].
Astroglia or astrocytes are star-shaped cells that make up between 17 to 61 % of the cells in the human brain, depending on the region, and like microglia exhibit heterogeneous phenotypes in response to various insults, a process known as astrocyte reactivity [
80] . Astrocytes perform a myriad of essential functions, including maintenance and accuracy of brain signaling, recycling of neurotransmitters, maintenance of the BBB, modulation of ionic environment, providing metabolic support for the neurons, and regulating sphingolipid and cholesterol metabolism, where disruption of the latter has been directly linked to ASD [
80,
81,
82]
As alluded to earlier, risk factors for ASD include disturbed brain homeostasis, genetic predispositions, and inflammation during the prenatal period caused by viruses or bacteria. Another factor linked to the onset of ASD is the activation of the maternal immune system where gestational inflammation at embryonic day 13 or 15 in mice, induces the most profound symptoms. This is because during this period the neural tube has closed and progenitors are migrating and proliferating. [
83] Many studies suggest involvement of glia in the pathology of autism, as evidenced by increased expression of glia-associated proteins in the brain. It is hypothesized that alterations of astroglial function leads to disrupted homeostasis of excitatory/inhibitory balance due to aberrant Ca
2+ signaling, and eventual manifestation of ASD [
83,
84]. In sum, disruption of astrocyte function may affect proper neurotransmitter metabolism, synaptogenesis, and inflammation, leading to ASD. Thus, astroglia may represent presumptive targets for novel therapeutic strategies [
83,
85].
Oligodendrocytes (ODs), the myelinating cells of the brain, represent about 75% of all glial cells in the adult CNS. In addition to axonal myelination, ODs control extracellular potassium concentration, provide metabolic and trophic supply to myelin, secrete glial and brain-derived neurotrophic factors (GDNF and BDNF), and modulate axonal growth [
86,
87], all of which highlight their importance in the functioning of the CNS. The importance of ODs in the pathogenesis of neurodevelopmental and neurodegenerative disease have been verified [
88]. It is of relevance to note that in the peripheral nervous system, neuroglia that are equivalent to ODs are referred to as Schwann cells [
89].
Recent comparative genomic analyses of the causative genes of ASD in animal models have demonstrated that ODs may also contribute to the molecular mechanisms underlying social functioning, disturbance of which can lead to ASD [
90]. Specifically, it was demonstrated that OD-lineage cells and myelination are altered in a murine model of ASD induced by the prenatal exposure to VPA [
91] . OD importance in neurodegenerative diseases in general and Parkinson’s disease, in particular, has been lately documented [
88]. Moreover, ODs also express toll-like receptors (TLRs), considered of significant importance in myelin formation [
67,
92,
93].
NG2 cells are a subset of CNS glial cells, commonly referred to as synantocytes or neuron glial 2, or nerve/glial antigen 2 (NG2). These cells display a variety of features including (i) a complex stellate morphology; (ii) an almost uniform distribution in both gray and white matter areas; (iii) the ability to keep proliferating in the adult brain; (iv) ability to give rise to astrocytes and neurons that may be recruited to areas of lesion and (v) a tendency to intimately associated with neuronal cell bodies and dendrites; [
86,
94,
95].
NG2 cells were considered to function solely as progenitors for oligodendrocyte ODs. However, now they are believed to have many other important functions, dysfunction of which can lead to pathologies such as demyelinating, neurovascular disruption, neuroinflammation, and neurodegeneration [
96,
97,
98,
99,
100]. They have been proposed as targets in various neurological diseases due to their ability to receive synapses from neurons and affect neuronal plasticity[
101].
A link between NG2 cells and ASD is suggested by several studies. ASD and severe macrocephaly are associated with germline mutations in the
PTEN gene. This mutation occurs in 7 - 27% of patients with ASD and macrocephaly and may account for up to 5% of all ASD cases as macrocephaly is found in approximately 20 % of the ASD population. Indeed,
PTEN mutation screening is recommended in all cases of ASD where the individual has a head circumference greater than 3 standard deviations above the mean for their age and sex [
102]. PTEN is best known for dephosphorylating phosphatidyl-inositol (3,4,5)-triphosphate, inhibiting the PI3K/AKT/mTOR signaling pathway. The
Ptenm3m4 mouse model exhibited an increased NG2 cell proliferation and accumulation of glia, with behavioral abnormalities like some individuals ASD[
103,
104,
105] .
Now that we have described the relevant cell populations, we will turn our attention to specific chemical exposures that have been implicated in the etiology of ASD.