1. Introduction
Cell death is a dynamic process with different pathways (apoptosis, necroptosis, ferroptosis…) that lead to different responses. Each pathway has many different subroutines with many different molecular mechanisms that can overlap [
1]. Most subroutines last between 3 and 48 hours and usually end in cell death. However, during this period, the cell can reverse the cell death pathway (a process known as anastasis). Anastasis can be triggered at any point along the death pathway until the cell is no longer able to reverse the death pathway [
2]. In addition, certain cell death pathways release cytokines that trigger the proliferation of neighbouring cells (of the same or a different cell type). This is a mechanism that allows the tissue to compensate for the death of neighbouring cells and is called compensatory proliferation (a pathway involved in normal homeostatic mechanisms) [
3]. Thus, when a toxic agent is injected into a cell population, the cells either die, remain intact or divide [
4,
5].
In this sense, evaluating the toxicity of a compound using a cell model can be misleading if not all the possible outcomes are considered. For example, a toxic compound may induce a decrease in the cell number of a cell population which may afterwards renew it. Moreover, this cell population may be a functional cell population to the same extent as before the exposure [
4,
6]. To solve this problem, we propose a new method to determine substance’s toxicity that encompasses the three outcomes mentioned above. Based on these outcomes we observed and predicted cell population dynamics to determine the toxicity of the toxic agent. We tested the suitability and accuracy of the proposed method with two different conformations to have a more comprehensive data in regards of its usability. In the first conformation, we exposed a monoculture model of blood macrophages to different toxic agents. In the second, we exposed a coculture liver model to various hepatotoxic compounds. We observed that the proposed method is consistent with the toxicity assessment of other well-established toxicity assessment methods. Moreover, the toxicity assessment of the hepatotoxic drugs with this new method is in line with the available clinical data [
7,
8,
9,
10,
11].
3. Discussion
Cells are constantly dying and reproducing to maintain the homeostasis of the organ. Thus, assessing the viability of a cell population at a given time may not describe the dynamics of the cell population (in terms of its viability) [
4,
5]. This is especially true when inoculating a toxic substance. A group of cells that is categorised as dead may reverse course and even induce neighbouring cells to proliferate. The frequency of these events (known as false positives) could be lower if viability is determined using a method that considers the dynamics of the cell population. To estimate the imminent dynamics of a cell population (t
1+h), we can calculate the difference in cell number between two different time points (t
0 and t
1), count the dividing cells and subtract the dead cells at time point t
1.
Most cell death pathways last 48 hours [
1,
12,
13,
14], and most cells divide for 24 hours [
15]. In addition, tissue-repairing signals that trigger proliferation are initiated approximately 6 hours after the onset of programmed cell death [
3]. Therefore, 24-48 hours after inoculation with the toxic compound, the majority of cells would either die, maintain their integrity or divide.
Previous studies observed that exposure of a toxic compound to a cell population can be accompanied not only by cell death but also by cell proliferation (known as compensatory proliferation) [
16,
17]. This situation can be even more pronounced in heterogeneous cell populations; certain cell types can be induced to die while other cell types can be induced to proliferate [
16,
17]. In complex models such as the liver can be particularly striking, where dying hepatocytes (which make up 80% of the liver) can induce fibroblast proliferation through compensatory proliferation [
18,
19]. If these assumptions are contemplated, the toxicity of a given compound can be determined with greater accuracy than existing methods because all possible outcomes are considered (in contrast to existing methods). In this sense, the proposed method predicted cell population dynamics in two models (monoculture of TLT and complex liver model with four different cell types) with high accuracy.
When exposing the TLT cells to 12.5 mM H2O2 we expected to observe a higher frequency of necroptotic cells [
20]. On the other hand, 266 µM TBBPA or 500 µM 5-FU exposure should induce apoptosis on TLT cells [
21,
22]. Cell death (mainly by autophagy) was also induced by nutrient starvation [
23]. For this purpose, 50 microliters of the cell medium were added, and the medium was not replenished for 72 hours. To induce ferroptosis (via lipid peroxidation) [
24], 15 µL of FA was added to the cell medium. Finally, cell death (mainly parthanatos and apoptosis) was also induced by UV irradiation of the cells for 5 minutes [
25]. After the exposure to the above mentioned toxic agents, we observed a reduction in cell viability in all cases, which was expected [
20,
21,
22,
23,
24,
25]. At this point, we replenish the media in all samples with cell culture medium without the toxic substances. 24 hours after changing the media, the cells exposed to nutrient deprivation and 500 µM 5-FU proliferated, while the remaining cells showed reduced viability. The nutrient deprivation triggers an autophagy response [
23], which we observed in the first 24 hours (
Figure 1b, Day 1). However, as previously observed by other studies [
26,
27,
28], after the cells were supplied with new nutrients, they changed this pathway and favoured cell division (
Figure 1b, Day 1+). 5-FU induces cell death arrest in cells [
29], and subsequently to cell death, as we observed in the samples treated with it (
Figure 1b, Day 1). But after changing the medium, the cells reversed the cell death pathway and induced proliferation (
Figure 1b, Day 1+). As a result, the cells showed a higher cell number 24 hours after cell renewal (
Figure 1c, Day 2). As observed in a previous study, cells can re-enter the cell cycle after cell cycle arrest [
30]. In another study, the mechanisms between cell cycle arrest switching and proliferation were also discussed (growth factors and focal adhesion kinase activation of cell cycle and the arrest induced by yes-associated protein phosphorylation) [
31]. Once the cell cycle arrest molecule is washed away, cells can resume or continue the cell cycle and proliferate [
31].
It is noteworthy that the untreated sample in the TLT cell experiment showed a relatively high ratio of cell death to cell division. However, considering that the blood macrophages formed a monolayer at the beginning of the experiment and had a doubling time of 20 hours, further TLT cultivation is expected to induce them to die and proliferate [
32].
We also tested the DD Cell-Tox method in a liver model with four different types of liver cells (LSEC, Kupffer, HSC and hepatocytes). We exposed the model to three different hepatotoxic compounds and evaluated the cell population dynamics using the DD Cell-Tox method. The cell population predictions were consistent with the clinical data (
Figure 2b) [
7,
8,
9,
10,
11].
RIF is an antibiotic that is commonly used to treat tuberculosis. Treatment with RIF can lead to toxicity after the first week of exposure. The mechanism of hepatotoxicity is related to the induction of various cytochrome P450 (CYP) enzymes, including CYP3A4 and ABC C2. The toxicity of the resulting metabolites may be the main cause of toxicity [
7]. In this sense, no toxic response was observed during the first week, as documented in clinical data (
Figure 2b) [
10].
IBU is a non-steroidal anti-inflammatory drug (NSAID) that is used to treat inflammation and mild pain in patients. IBU can have potentially hepatotoxic effects with prolonged constant use (over a week of constant use at high doses), possibly due to the accumulation of toxic metabolic by-products [
33]. During the first week of exposure, we didn’t observe any toxic response, as it happened with the clinical reference we found (
Figure 2b) [
11].
5-FU is used as a cytotoxic anticancer agent for the treatment of various types of cancer (especially in the colon). 5-FU has been associated with clinically apparent acute liver injury in certain cases. Clinical hepatotoxic markers increase slightly when patients are treated with 5-FU. This is mainly due to the accumulation of toxic metabolic by-products and the inhibition of thymidylate synthase [
8,
34,
35,
36]. The latter may induce a cell population reduction in comparison to the untreated sample during the first week of exposure (
Table 2). Longer exposure to 5-FU would have a significant toxic effect on the liver model, as observed in clinical references (
Figure 2b) [
9].
Thus, the method is compatible and accurate with a complex model with different cell types. In addition, this method allows a more informative observation of potential cell replication and cell death events. With the DD Cell-Tox method, we can observe cell death or proliferation activity in the first 24 hours and predict possible cell deaths and cell doublings in the next 24 hours. In this way, we cover a 48-hour window, which is normally the longest period for programmed cell death or cell doubling.
Highlights
The DD Cell-Tox method directly determines the viability of cells. Therefore, it has the potential to be more accurate than methods based on an indirect determination of cell viability.
The DD Cell-Tox method provides a more comprehensive assessment of toxic compound-induced cell outcomes.
The application of the DD Cell-Tox method can be of particular importance in toxicological studies where compensatory proliferation is expected.
Limitations
At a certain point, the cell can initiate the cell death process, but the test does not classify it as dead because the test only determines the cells after the “point of no return”. However, counting a cell that is dead before the point of no return can lead to a false positive result, as the cell can reverse the process.
Innovative methods for testing carcinogenic cells continue to be a focus of research and development in oncology and cancer biology [
37,
38]. Cancer treatments aim to preserve the function of healthy cells by maintaining homeostasis, while inducing cell death of cancer cells to control the disease [
39]. This method is of particular interest for research with carcinogenic cells for use in cancer models as it assesses cell death and proliferation.
4. Materials and Methods
4.1. Cells
i. Human blood macrophages, called TLT, were isolated from the blood of a healthy donor at the University of Maribor (Maribor, Slovenia) (10). TLT cells were cultured in colourless Williams E medium (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 5 wt.% fetal bovine serum (Gibco, Thermo Fisher Scientific, Waltham, MA USA), respectively. L-glutamine (2 mM, Sigma), penicillin (100 U mL−1, Sigma), and streptomycin (1 mg*/mL−1, Fluka, Buchs, Switzerland) were also added. Cells were cultured in 25 cm2 culture flasks (Corning, New York, USA) at 37 °C and 5% CO2.
ii. A liver model was built by coculturing liver sinusoidal endothelial cells (LSEC), human stellate cells (HSC), Kupffer cells (nonparenchymal liver cells, NPC), from ZEN-BIO (USA), and hepatocytes from Lonza (Switzerland). NPC and hepatocytes were grown separately in a 25 cm2 flask (NUNC, Denmark) in a controlled environment at 37º C and 5% CO2 and later seeded together in a 96-well microplate (NUNC, Denmark) to build the liver model.
4.2. Chemicals
Chemical 3-(4,5-dimethylthiazole-2-yl)-2,5-phenyl tetrazolium bromide (MTT) was acquired from Sigma-Aldrich (Saint Louis, MO, USA). Phosphate-buffered saline solution (PBS), FluoVolt™ (FV) Membrane Potential Kit, Vybrant™ DyeCycle™ Ruby Stain (Vybrant), and propidium iodide (PI) were purchased from Thermo Fisher Scientific (Waltham, MA USA).
Hydrogen peroxide (30%) (H2O2), tetrabromobisphenol A (TBBPA), Rifampicin (RIF), ibuprofen (IBU), and 5-fluorouracil (5- FU) were purchased from Merck (Merck KGaA, Darmstadt, Germany). Fatty acids (FA) were obtained from oil digestion with lipase (Merck KGaA, Germany).
4.2. Protocol
The protocol of the DD-Cell-Tox method is the same as the protocol described in Appendix A.3. in the manuscript “A Promising Method for the Determination of Cell Viability: The Membrane Potential Cell Viability Assay” [
40] (
Figure 3a-b). As described in this manuscript, the cells with FV intensity outside the “viable FV intensity range” (term described in the manuscript) were categorised as dead. In contrast, the cells with FV intensity within the “viable FV intensity range” were categorised as viable cells. However, in the DD-Cell-Tox method, we count the number of dividing cells: The cells that were temporally depolarized and had a higher DNA content (2n) were categorised as duplicating cells [
41]. By doing so, we were able to observe and predict the cell number in the following days by calculating the cell number at the time of the experiment, counting the dividing cells and subtracting the dead cells at the time of measurement. This method provides the cell dynamics, and the toxicity of the drug is determined by it (
Figure 3c).
4.3. Testing the Method in the First Configuration (Monoculture)
We seeded TLT cells in two 96-well microplate and waited until they reached 100% confluency. After cell monolayer formation, the cells on a 96-well microplate were treated with different toxic substances 12.5 mM H2O2, 266 µM TBBPA, 500 µM 5-FU, nutrient deprivation, 15 µL FA for 24 hours. We exposed the cells seeded in the other 96-well microplate to UV light for 5 minutes. At this point, we tested the viability of the samples with three different methods: DD Cell-Tox method, PI method [
42] and MTT assay [
43] (
Figure 4c). After the treatments, we renewed the cell medium in all samples with new cell culture medium without the toxic agents. And we tested the viability of the samples with the Cell count method [
44] (
Figure 4d) and compared its toxicity assessment with the DD Cell-Tox method, PI method and MTT assay (
Figure 4e).
4.4. Testing the Method in the Second Arrangement (Coculture Model)
We cultured the liver cells separately until confluency and then reseeded them to build the liver model. We seeded 20,000 hepatocytes and 5,000 NPC (
Figure 5a). We cultured them with Hep medium (as described in the manuscript “In Vitro Human Liver Model for Toxicity Assessment with Clinical and Preclinical Instrumentation” [
45]). We individually added three different hepatotoxic drugs to the cell culture media at the following final concentrations: 50 µmol/l RIF, 1 mmol/l IBU or 500 µmol/l 5-FU. Two days after the addition we renew the same culture medium (
Figure 5c). 5 days after the initial exposure, we measured the viability of the cells with the DD Cell-Tox method and compared to the clinical data obtained from the literature [
7,
8,
9,
10,
11] (
Figure 5d).
4.5. Statistical Analysis
We used the ANOVA-tukey HSD test to compare the viability assessment of the cell count, MTT and PI methods. We used Mann-Whitney to test the difference between the cell number in DD Cell-Tox and Cell count methods.
Figure 1.
Viability assessment of the various methods in comparison to cell count method. a) Viability assessment comparison between Cell count (CC), MTT (MTT) and PI methods (PI). b) Viability assessment with the DD Cell-Tox method. c) Cell count of the samples at different time points. (> 0.05, * 0.05, ** 0.01, *** 0.001). CC: Cell count method, MTT: MTT assay, PI: PI method; 5-FU: 5-fluorouracil, FA: Fatty acids, H2O2, NS: Nutrient starvation, TBBPA: tetrabromobisphenol A.
Figure 1.
Viability assessment of the various methods in comparison to cell count method. a) Viability assessment comparison between Cell count (CC), MTT (MTT) and PI methods (PI). b) Viability assessment with the DD Cell-Tox method. c) Cell count of the samples at different time points. (> 0.05, * 0.05, ** 0.01, *** 0.001). CC: Cell count method, MTT: MTT assay, PI: PI method; 5-FU: 5-fluorouracil, FA: Fatty acids, H2O2, NS: Nutrient starvation, TBBPA: tetrabromobisphenol A.
Figure 2.
Comparison between the DD Cell-Tox method toxicity assessment in a liver model and the existing clinical data for RIF, IBU and 5-FU. a) DD Cell-Tox method toxicity evaluation of RIF, IBU and 5-FU. b) ALT, AST and Bilirubin values of patients treated with RIF, IBU and 5-FU. (> 0.05, * 0.05, ** 0.01, *** 0.001). 5-FU: 5-fluorouracil, IBU: ibuprofen, RIF: rifampicin.
Figure 2.
Comparison between the DD Cell-Tox method toxicity assessment in a liver model and the existing clinical data for RIF, IBU and 5-FU. a) DD Cell-Tox method toxicity evaluation of RIF, IBU and 5-FU. b) ALT, AST and Bilirubin values of patients treated with RIF, IBU and 5-FU. (> 0.05, * 0.05, ** 0.01, *** 0.001). 5-FU: 5-fluorouracil, IBU: ibuprofen, RIF: rifampicin.
Figure 3.
DD Cell-Tox method toxicity assessment scheme. a) The method’s protocol. b) Cell response measurement with the Imaging flow cytometer MK2 (ISX). c) Diagram (analysis) of the cell dynamics for the toxicity assessment of substances.
Figure 3.
DD Cell-Tox method toxicity assessment scheme. a) The method’s protocol. b) Cell response measurement with the Imaging flow cytometer MK2 (ISX). c) Diagram (analysis) of the cell dynamics for the toxicity assessment of substances.
Figure 4.
The experimental setup for DD Cell-Tox accuracy assessment in blood macrophages. a) Cells were seeded and cultured till 100% confluency was achieved. b) After cell attachment, the samples were treated with hydrogen peroxide, TBBPA, 5-FU, FA, nutrient starvation and UV c) 24 hours after the treatment, cell viability was assessed with the MTT assay and the PI method. At the same time, DD Cell-Tox method was performed. The formula to calculate the cell number prediction of the population is depicted in the graph below the formula used for the calculation. d) 48 hours after the treatment, cell viability was assessed with the cell count method. e) The accuracy of the cell count method 48 hours after treatment was compared to the DD Cell-Tox method, MTT assay, and the PI method. 5-FU: 5-fluorouracil, FA: Fatty acids, H2O2, NS: Nutrient starvation, TBBPA: tetrabromobisphenol A.
Figure 4.
The experimental setup for DD Cell-Tox accuracy assessment in blood macrophages. a) Cells were seeded and cultured till 100% confluency was achieved. b) After cell attachment, the samples were treated with hydrogen peroxide, TBBPA, 5-FU, FA, nutrient starvation and UV c) 24 hours after the treatment, cell viability was assessed with the MTT assay and the PI method. At the same time, DD Cell-Tox method was performed. The formula to calculate the cell number prediction of the population is depicted in the graph below the formula used for the calculation. d) 48 hours after the treatment, cell viability was assessed with the cell count method. e) The accuracy of the cell count method 48 hours after treatment was compared to the DD Cell-Tox method, MTT assay, and the PI method. 5-FU: 5-fluorouracil, FA: Fatty acids, H2O2, NS: Nutrient starvation, TBBPA: tetrabromobisphenol A.
Figure 5.
The experimental setup for DD Cell-Tox accuracy assessment in a cell-based liver model. a) We designed a liver model with four cell types: LSEC, HSC, Kupffer cells and hepatocytes. b) Brightfield image at 20x magnification obtained with an inverted microscope (Axiovert 40 CFL, ZEISS, Germany). c) We exposed the liver model to RIF, IBU, and 5-FU for 5 days (we renew the medium after 2 days). d) We measured the cell viability with the DD Cell-Tox method. 5-FU: 5-fluorouracil, IBU: ibuprofen, RIF: rifampicin.
Figure 5.
The experimental setup for DD Cell-Tox accuracy assessment in a cell-based liver model. a) We designed a liver model with four cell types: LSEC, HSC, Kupffer cells and hepatocytes. b) Brightfield image at 20x magnification obtained with an inverted microscope (Axiovert 40 CFL, ZEISS, Germany). c) We exposed the liver model to RIF, IBU, and 5-FU for 5 days (we renew the medium after 2 days). d) We measured the cell viability with the DD Cell-Tox method. 5-FU: 5-fluorouracil, IBU: ibuprofen, RIF: rifampicin.
Table 1.
Summarizing the effect of contaminants in TLT.
Table 1.
Summarizing the effect of contaminants in TLT.
Group |
Number of initial cells |
Number of final cells |
Dead cells (%) |
Division cells (%) |
Control |
11329 |
12130 |
12 |
20 |
5-FU |
11329 |
7327 |
7 |
26 |
FA |
11329 |
7318 |
35 |
0 |
H2O2 |
11329 |
5564 |
33 |
0 |
NS |
11329 |
10694 |
12 |
39 |
TBBPA |
11329 |
4064 |
45 |
3 |
UV |
11329 |
6797 |
26 |
7 |
Table 2.
Summary of the DD cell-Tox method toxicity evaluation of three well-known hepatotoxic drugs.
Table 2.
Summary of the DD cell-Tox method toxicity evaluation of three well-known hepatotoxic drugs.
Group |
Number of initial cells |
Number of final cells |
Cell number increase (%) |
Dead cells (%) |
Division cells (%) |
Control |
25000 |
72797 |
291 |
3 |
2 |
5-FU |
25000 |
63056 |
252 |
4 |
3 |
IBU |
25000 |
67919 |
272 |
3 |
4 |
RIF |
25000 |
68995 |
276 |
2 |
2 |