Single-stranded cDNA was synthesized from total RNA using a PrimeScript
TM RT Reagent Kit with gDNA Eraser (TaKaRa) and TaKaRa Cycler Dice
TM mini (TaKaRa) in accordance with the manufacturer's manual. Real-time RT-PCR was performed using TB Green Premix Ex Taq II (Tli RNaseH Plus) (TaKaRa) with Thermal Cycler Dice Real Time System III (TaKaRa) in accordance with the manufacturer's manual. Data were analyzed using Thermal Cycler Dice
® Real Time System Single Software ver. 5.11. Actin was used for normalization because it is recommended as a reference gene for grapes, and expression levels are shown as relative values [
49]. The real-time RT-PCR conditions were as follows: 37 ºC for 15 min for RT reaction and 85 ºC for 5 s for cDNA synthesis, and then 40 cycles at 95 ºC for 5 s and at 60 ºC for 30 s for PCR amplification. The nucleotide sequences of the primers were as follows:
Vvactin (5’-CAAGAGCTGGAAACTGCAAAGA-3’ and 5’-AATGAGAGATGGCTGGAAGAGG-3’, GenBank accession no. AF369524),
PAL (5’-AAACAAGGTGGTGCCCTTCA-3’ and 5’- GGTGTTGATCCTCACGAGCA-3’, NM_001397918),
C4H (5’-AAAGGGTGGGCAGTTCAGTT-3’ and 5’-GGGGGGTGAAAGGAAGATAT-3’, XM_002266202),
4CL (5’-AGATGGGGATCAAGCAAGGC-3’ and 5’-ATCTCGGCCGGCATGTAAAA-3’, XM_002272746),
CHS (5’-TCTGAGCGAGTATGGGAACATG-3’ and 5’-CTGTGCTGGCTTTCCCTTCT-3’, NM_001280950),
CHI (5’-GACGGGTCGCCAGTATTCAG-3’ and 5’-GCTTTGGCTTCTGCGTCAGT-3’, NM_001281104),
F3'H (5’-TATGGGCTGACCCTACAACGA-3’ and 5’-CCTGGGCAAACAACCTCATT-3’, NM_001280987),
F3'5'H (5’-AGGGTCGGAGTCAAATGAGTTC-3’ and 5’-CGCTGGATCCCTTGGATGT-3’, NM_001281235),
F3H (5’-CCAATCATAGCAGACTGTCC-3’ and 5’-TCAGAGGATACACGGTTGCC-3’, NM_001281105),
DFR (5’-AACTGCTCTTTCCCCGA-3’ and 5’-AACGTCCCTCTGCCTTAGGATTC-3’, NM_001281215),
LDOX (5’-GCGATATGACCATCTGGCCTAA-3’ and 5’-ATCCCAACCCAAGCGATAGC-3’, NM_001281218.1),
mybA1 (5’-GCAAGCCTCAGGACAGAAGAA-3’ and 5’-ATCCCAGAAGCCCACATCAA-3’, AB111101),
UFGT (5’-CTTCTTCAGCACCAGCCAATC-3’ and 5’-AGGCACACCGTCGGAGATAT-3’, NM_001397857.1),
NCED1 (5’-GAGACCCCAACTCTGGCAGG-3’ and 5’-AAGGTGCCGTGGAATCCATAG-3’, NM_001281270.1),
ACS3 (5’-CCACCCCATACTACCCAGGA-3’ and 5’-TTGAGGCTGCGTTTTTGAGC-3’, XM_003635528.3),
ACO2 (5’-CAAATGGACGCTGTGGAAAA-3’ and 5’-ATGGCGGAGGAAGAAGGTACT-3’, NM_001280942.1),
LOX (5’-TGGGCTGAAGCTTTTGATAG-3’ and 5’-CTTGGGCTTGGGTAGTAGT-3’, FJ858257)[
50],
SOD3 (5’-GGCGATTCATCTACGGTTGTC-3’ and 5’-CCTCCGCCGTTGAACTTG-3’, NM_001281206)[
51],
APX6 (5’-GCCCACTCTCCCCATTCTC-3’ and 5’-TGGAGTTTTGGCGGGAAAT-3’, XM_002282641)[
51],
CAT (5’-GGAGGATGAAGCCATAAGAG-3’ and 5’-GGCTGCAAGGGCAAGATA-3’, XM_003631877)[
52], and
chit4 (5’- CAATCGGGTCCTTGTGATTC-3’ and 5’- CAAGGCACTGAGAAACGCT-3’, U97522, respectively).