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A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Samples | Kindom | Phylum | Class | Order | Family | Genus | Species | |
CK | du | 2±0 | 27±2.52 | 50±14.01 | 107±35 | 177±73.93 | 254±126.89 | 276±143.62 |
je | 2±0 | 21±3.21 | 35±11.02 | 71±25.51 | 109±47.18 | 149±71.77 | 160±72.92 | |
il | 2±0.58 | 28±6.08 | 55±15.59 | 127±49.39 | 226±95.31 | 381±177.79 | 417±187.16 | |
ce | 1±0.58 | 13±5.77 | 22±10.97 | 45±20.5 | 83±38.73 | 149±55.18 | 178±55.07 | |
re | 2±0.58 | 25±6.66 | 51±20.21 | 115±43.04 | 195±75.92 | 306±115.77 | 345±125.3 | |
T | du | 2±0 | 25±3.21 | 50±11.24 | 109±32.08 | 170±69.46 | 252±129.69 | 269±140.88 |
je | 2±0 | 27±3.79 | 51±5.51 | 107±13.05 | 169±33.08 | 248±67.1 | 264±74.57 | |
il | 2±0 | 24±2.08 | 50±5.29 | 119±10.79 | 200±10.26 | 310±22.5 | 348±25.42 | |
ce | 2±0 | 17±5 | 29±11.14 | 63±25.79 | 103±30.12 | 175±43.27 | 209±44.6 | |
re | 1±0 | 12±6.08 | 20±10.97 | 46±19.35 | 80±27.73 | 143±38.4 | 173±41.88 |
Feeding stage (Day) | Water | Crude protein | Crude fat | Crude fiber |
Crude ash |
Calcium | Total phosphorus | Sodium chloride | Methionine |
---|---|---|---|---|---|---|---|---|---|
1-18 | 12 | 22 | 4 | 3 | 5 | 0.8 | 0.65 | 0.54 | ≤0.9 |
19-33 | 12 | 20 | 5 | 3 | 5 | 0.8 | 0.55 | 0.38 | ≤0.9 |
34-42 | 12 | 19 | 7 | 3 | 5 | 0.7 | 0.6 | 0.37 | ≤0.9 |
Sold age/d | Sold weight/kg | Survival rate | Feed conversion ratio | EPI | |
---|---|---|---|---|---|
CK | 42 | 2.54±0.006a | 0.96±0.006 a | 1.59±0.012a | 362.65±3.47a |
T | 42 | 2.65±0.01b | 0.98±0.006b | 1.54±0.006b | 399.28±1.63b |
intestinal segment | raw reads | clean reads | denoised reads | merged reads | non chimeric read | |
---|---|---|---|---|---|---|
CK | du | 69584±13639.24 | 63662±12142.49 | 63583±12127.45 | 63109±12058.75 | 62608±12002.32 |
je | 79087±1484.33 | 73337±2068.34 | 73278±2057.47 | 73062±2111.19 | 69890±643.3 | |
il | 79965±87.37 | 75332±205.46 | 74958±275.43 | 71065±740.99 | 66047±1952.38 | |
ce | 79953±195.22 | 73727±2624.85 | 73449±2531.63 | 68091±1050.93 | 60924±5916.03 | |
re | 80060±268.34 | 73906±2927.62 | 73701±2957.73 | 71129±3951.46 | 69109±4771.54 | |
T | du | 58835±7561.23 | 53492±6656.76 | 53425±6664.03 | 53043±6616.83 | 52233±6351.19 |
je | 64566±26465.03 | 57869±22754.19 | 57758±22691.23 | 57221±22541.65 | 55390±20704.27 | |
il | 71205±15305.56 | 65995±15788.91 | 65858±15748.33 | 64743±15233 | 62781±14352.12 | |
ce | 79934±65.73 | 74194±2152.66 | 73969±2236.57 | 70843±4343.02 | 67302±6587.09 | |
re | 67939±21015.84 | 62847±18892.92 | 62600±18770.72 | 58192±16406.67 | 53054±14027.97 |
Sample | Feature | ACE | Chao1 | Simpson | Shannon | PD_whole_tree | Coverage |
---|---|---|---|---|---|---|---|
CK | 642±346.47 | 645±347.56 | 648±349.01 | 1±0.16 | 5±1.85 | 79±33.14 | 1 |
T | 574±183.03 | 576±183.48 | 577±183.79 | 1±0.03 | 7±0.85 | 93±56.73 | 1 |
Genus | CK | T |
---|---|---|
Aminobacterium | 9±15.59 | 35±60.04 |
Bacteroides | 484±224.89 | 755±508.83 |
Lactobacillus | 2195±2958.18 | 9870±12485.8 |
Lachnospiraceae_NK4A136_group | 537±459.08 | 562±335.41 |
Odoribacter | 2±3.21 | 102±169.51 |
Sphingomonas | 205±80.18 | 597±361.21 |
Genus | CK | WT |
---|---|---|
Alistipes | 56±11.37 | 300±343.23 |
Bacteroides | 54±20.66 | 1562±625.47 |
Barnesiella | 15±13.45 | 20±3.5 |
Campylobacter | 53±86.89 | 39±9.07 |
Christensenellaceae_R_7_group | 16±1.15 | 82±84.61 |
Faecalibacterium | 32±18.04 | 64±54.6 |
Lachnospiraceae_NK4A136_grou | 78±24.76 | 914±503.41 |
Phascolarctobacterium | 0±0 | 40±69.28 |
Proteiniphilum | 20±8.33 | 232±200 |
[Ruminococcus]_torques_group | 25±22.34 | 43±41.55 |
Staphylococcus | 2±1.73 | 35±28.21 |
Sphingomonas | 35±22.3 | 313±128.91 |
unclassified_Butyricicoccaceae | 0±0 | 6±2.05 |
unclassified_Oscillospiraceae | 16±1.15 | 82±84.61 |
Genus | CK | WT |
---|---|---|
Aminobacterium | 2±4.04 | 18±31.18 |
Bacteroides | 931±729.93 | 1353±775.55 |
Bilophila | 58±58.04 | 39±13.58 |
Campylobacter | 24±33.86 | 29±14.43 |
Escherichia_Shigella | 63±46.61 | 156±122.19 |
Parabacteroides | 572±586.62 | 305±20.53 |
Proteiniphilum | 0±0 | 75±125.6 |
Sphingomonadaceae | 42±37.24 | 10±16.74 |
Genus | CK | WT |
---|---|---|
Anaerotruncus | 25±27.78 | 5±5.03 |
Barnesiella | 1281±350.15 | 2652±705.11 |
Caproiciproducens | 0±0 | 3±5.77 |
Christensenellaceae_R_7_group | 2143±172.87 | 2522±1006.54 |
Rikenella | 0±0 | 392±82.25 |
Sphingomonadaceae | 3±5.2 | 0±0 |
unclassified_Clostridia_UCG_014 | 2470±663.49 | 1549±293.3 |
unclassified_Oscillospiraceae | 2387±1956.92 | 3533±107.68 |
Genus | CK | WT |
---|---|---|
Rikenella | 5±4.16 | 377±163.69 |
Ruminococcus | 1126±180.33 | 1589±476.63 |
Sphingomonadaceae | 3±5.2 | 2±4.04 |
unclassified_Clostridia_UCG_014 | 980±303.77 | 305±114.13 |
unclassified_Oscillospiraceae | 112±20.53 | 256±103.01 |
uncultured_Firmicutes_bacterium | 2609±715.17 | 3247±1414.46 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Submitted:
09 May 2024
Posted:
12 May 2024
You are already at the latest version
A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Submitted:
09 May 2024
Posted:
12 May 2024
You are already at the latest version
Samples | Kindom | Phylum | Class | Order | Family | Genus | Species | |
CK | du | 2±0 | 27±2.52 | 50±14.01 | 107±35 | 177±73.93 | 254±126.89 | 276±143.62 |
je | 2±0 | 21±3.21 | 35±11.02 | 71±25.51 | 109±47.18 | 149±71.77 | 160±72.92 | |
il | 2±0.58 | 28±6.08 | 55±15.59 | 127±49.39 | 226±95.31 | 381±177.79 | 417±187.16 | |
ce | 1±0.58 | 13±5.77 | 22±10.97 | 45±20.5 | 83±38.73 | 149±55.18 | 178±55.07 | |
re | 2±0.58 | 25±6.66 | 51±20.21 | 115±43.04 | 195±75.92 | 306±115.77 | 345±125.3 | |
T | du | 2±0 | 25±3.21 | 50±11.24 | 109±32.08 | 170±69.46 | 252±129.69 | 269±140.88 |
je | 2±0 | 27±3.79 | 51±5.51 | 107±13.05 | 169±33.08 | 248±67.1 | 264±74.57 | |
il | 2±0 | 24±2.08 | 50±5.29 | 119±10.79 | 200±10.26 | 310±22.5 | 348±25.42 | |
ce | 2±0 | 17±5 | 29±11.14 | 63±25.79 | 103±30.12 | 175±43.27 | 209±44.6 | |
re | 1±0 | 12±6.08 | 20±10.97 | 46±19.35 | 80±27.73 | 143±38.4 | 173±41.88 |
Feeding stage (Day) | Water | Crude protein | Crude fat | Crude fiber |
Crude ash |
Calcium | Total phosphorus | Sodium chloride | Methionine |
---|---|---|---|---|---|---|---|---|---|
1-18 | 12 | 22 | 4 | 3 | 5 | 0.8 | 0.65 | 0.54 | ≤0.9 |
19-33 | 12 | 20 | 5 | 3 | 5 | 0.8 | 0.55 | 0.38 | ≤0.9 |
34-42 | 12 | 19 | 7 | 3 | 5 | 0.7 | 0.6 | 0.37 | ≤0.9 |
Sold age/d | Sold weight/kg | Survival rate | Feed conversion ratio | EPI | |
---|---|---|---|---|---|
CK | 42 | 2.54±0.006a | 0.96±0.006 a | 1.59±0.012a | 362.65±3.47a |
T | 42 | 2.65±0.01b | 0.98±0.006b | 1.54±0.006b | 399.28±1.63b |
intestinal segment | raw reads | clean reads | denoised reads | merged reads | non chimeric read | |
---|---|---|---|---|---|---|
CK | du | 69584±13639.24 | 63662±12142.49 | 63583±12127.45 | 63109±12058.75 | 62608±12002.32 |
je | 79087±1484.33 | 73337±2068.34 | 73278±2057.47 | 73062±2111.19 | 69890±643.3 | |
il | 79965±87.37 | 75332±205.46 | 74958±275.43 | 71065±740.99 | 66047±1952.38 | |
ce | 79953±195.22 | 73727±2624.85 | 73449±2531.63 | 68091±1050.93 | 60924±5916.03 | |
re | 80060±268.34 | 73906±2927.62 | 73701±2957.73 | 71129±3951.46 | 69109±4771.54 | |
T | du | 58835±7561.23 | 53492±6656.76 | 53425±6664.03 | 53043±6616.83 | 52233±6351.19 |
je | 64566±26465.03 | 57869±22754.19 | 57758±22691.23 | 57221±22541.65 | 55390±20704.27 | |
il | 71205±15305.56 | 65995±15788.91 | 65858±15748.33 | 64743±15233 | 62781±14352.12 | |
ce | 79934±65.73 | 74194±2152.66 | 73969±2236.57 | 70843±4343.02 | 67302±6587.09 | |
re | 67939±21015.84 | 62847±18892.92 | 62600±18770.72 | 58192±16406.67 | 53054±14027.97 |
Sample | Feature | ACE | Chao1 | Simpson | Shannon | PD_whole_tree | Coverage |
---|---|---|---|---|---|---|---|
CK | 642±346.47 | 645±347.56 | 648±349.01 | 1±0.16 | 5±1.85 | 79±33.14 | 1 |
T | 574±183.03 | 576±183.48 | 577±183.79 | 1±0.03 | 7±0.85 | 93±56.73 | 1 |
Genus | CK | T |
---|---|---|
Aminobacterium | 9±15.59 | 35±60.04 |
Bacteroides | 484±224.89 | 755±508.83 |
Lactobacillus | 2195±2958.18 | 9870±12485.8 |
Lachnospiraceae_NK4A136_group | 537±459.08 | 562±335.41 |
Odoribacter | 2±3.21 | 102±169.51 |
Sphingomonas | 205±80.18 | 597±361.21 |
Genus | CK | WT |
---|---|---|
Alistipes | 56±11.37 | 300±343.23 |
Bacteroides | 54±20.66 | 1562±625.47 |
Barnesiella | 15±13.45 | 20±3.5 |
Campylobacter | 53±86.89 | 39±9.07 |
Christensenellaceae_R_7_group | 16±1.15 | 82±84.61 |
Faecalibacterium | 32±18.04 | 64±54.6 |
Lachnospiraceae_NK4A136_grou | 78±24.76 | 914±503.41 |
Phascolarctobacterium | 0±0 | 40±69.28 |
Proteiniphilum | 20±8.33 | 232±200 |
[Ruminococcus]_torques_group | 25±22.34 | 43±41.55 |
Staphylococcus | 2±1.73 | 35±28.21 |
Sphingomonas | 35±22.3 | 313±128.91 |
unclassified_Butyricicoccaceae | 0±0 | 6±2.05 |
unclassified_Oscillospiraceae | 16±1.15 | 82±84.61 |
Genus | CK | WT |
---|---|---|
Aminobacterium | 2±4.04 | 18±31.18 |
Bacteroides | 931±729.93 | 1353±775.55 |
Bilophila | 58±58.04 | 39±13.58 |
Campylobacter | 24±33.86 | 29±14.43 |
Escherichia_Shigella | 63±46.61 | 156±122.19 |
Parabacteroides | 572±586.62 | 305±20.53 |
Proteiniphilum | 0±0 | 75±125.6 |
Sphingomonadaceae | 42±37.24 | 10±16.74 |
Genus | CK | WT |
---|---|---|
Anaerotruncus | 25±27.78 | 5±5.03 |
Barnesiella | 1281±350.15 | 2652±705.11 |
Caproiciproducens | 0±0 | 3±5.77 |
Christensenellaceae_R_7_group | 2143±172.87 | 2522±1006.54 |
Rikenella | 0±0 | 392±82.25 |
Sphingomonadaceae | 3±5.2 | 0±0 |
unclassified_Clostridia_UCG_014 | 2470±663.49 | 1549±293.3 |
unclassified_Oscillospiraceae | 2387±1956.92 | 3533±107.68 |
Genus | CK | WT |
---|---|---|
Rikenella | 5±4.16 | 377±163.69 |
Ruminococcus | 1126±180.33 | 1589±476.63 |
Sphingomonadaceae | 3±5.2 | 2±4.04 |
unclassified_Clostridia_UCG_014 | 980±303.77 | 305±114.13 |
unclassified_Oscillospiraceae | 112±20.53 | 256±103.01 |
uncultured_Firmicutes_bacterium | 2609±715.17 | 3247±1414.46 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
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