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A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Trait | N | Mean | SDa | Minb | Maxc |
---|---|---|---|---|---|
LogFEC1 | 26,638 | 6.63 | 1.14 | 4.60 | 10.51 |
LogFEC2 | 18,971 | 6.64 | 1.13 | 4.60 | 10.87 |
Trait | Method | h2 | ||
---|---|---|---|---|
FEC1 | BLUP | 0.15 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.01 |
SSGBLUP | 0.16 ± 0.01 | 0.66 ± 0.01 | 0.20 ± 0.01 | |
FEC2 | BLUP | 0.15 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.02 |
SSGBLUP | 0.16 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.02 |
Trait | Chr a | gVar(%) b | Windows Bounds (pb) | Candidate Genes |
---|---|---|---|---|
FEC1 | 6 | 0.83 | 35,429,074 - 35,554,875 | GPRIN3 |
6 | 0.73 | 37,072,532 - 37,134,706 | LAP3, MED28, FAM184B | |
11 | 0.61 | 26,119,722 - 26,407,016 | MINK1, PLD2, ZMYND15, CXCL16, MED11, ARRB2, PELP1, ALOX15 | |
11 | 0.57 | 27,002,322 - 27,807,356 | DNAH2, LOC101121185, SLC25A35, ODF4, NDEL1, MYH10 | |
25 | 0.49 | 21,324,145 - 22,654,093 | CTNNA3 | |
11 | 0.36 | 25,298,833 - 25,633,178 | WSCD1 | |
6 | 0.30 | 36,066,911 - 36,197,551 | HERC3, PYURF, PIGY, HERC5 | |
21 | 0.30 | 42,654,067 - 42,734,621 | SYVN1, SPDYC, CAPN1 | |
2 | 0.29 | 112,528,931 - 113,355,547 | HERC2, NIPA1, NIPA2, CYFIP1, TUBGCP5, PTPN18, AMER3 | |
11 | 0.28 | 27,811,348 - 28,475,634 | CCDC42, PIK3R5, STX8, USP43 | |
FEC2 | 11 | 1.94 | 26,119,722 - 26,407,016 | MINK1, PLD2, ZMYND15, CXCL16, MED11, ARRB2, PELP1, ALOX15 |
5 | 1.13 | 93,463,383 - 93,482,724 | CAST | |
11 | 0.90 | 27,002,322 - 27,807,356 | DNAH2, LOC101121185, SLC25A35, ODF4, NDEL1, MYH10 | |
11 | 0.77 | 27,811,348 - 28,475,634 | CCDC42, PIK3R5, STX8, USP43 | |
11 | 0.76 | 25,298,833 - 25,633,178 | WSCD1 | |
5 | 0.68 | 93,437,720 - 93,463,383 | CAST | |
6 | 0.64 | 37,072,532 - 37,134,706 | LAP3, MED28, FAM184B | |
6 | 0.53 | 35,429,074 - 35,554,875 | GPRIN3 | |
11 | 0.52 | 25,744,499 - 26,098,771 | C1QBP, RPAIN, NUP88, RABEP1, ZFP3, KIF1C, INCA1, CAMTA2, SPAG7 | |
6 | 0.51 | 37,483,582 - 37,665,116 | - |
Chr | Pos (bp) | Candidate genes |
---|---|---|
6 | 35,511,497 - 37,257,065 | FAM184B, MED28, LAP3, GPRIN3 |
11 | 25,298,833 - 28,475,634 | USP43, STX8, PIK3R5, CCDC42, MYH10, NDEL1, ODF4, SLC25A35, LOC101121185, DNAH2, ALOX15, PELP1, ARRB2, CXCL16, MED11, ZMYND15, PLD2, MINK1, CAMTA2, SPAG7, INCA1, KIF1C, ZFP3, RABEP1, NUP88, C1QBP, RPAIN, WSCD1 |
25 | 22,143,113 - 22,654,093 | CTNNA3 |
Category | Term | Genes | p-value | -log10(p-value) |
---|---|---|---|---|
GOTERM_BP | GO:2001303~lipoxin A4 biosynthetic process | ALOX15, LOC101121185 | 0.005 | 2.289 |
GOTERM_BP | GO:0001764~neuron migration | NDEL1, ENSOARG00000002682, MYH10 | 0.007 | 2.140 |
GOTERM_BP | GO:0019372~lipoxygenase pathway | ALOX15, LOC101121185 | 0.010 | 1.989 |
GOTERM_BP | GO:0043651~linoleic acid metabolic process | ALOX15, LOC101121185 | 0.010 | 1.989 |
GOTERM_BP | GO:0007097~nuclear migration | ENSOARG00000002682, MYH10 | 0.014 | 1.865 |
GOTERM_BP | GO:0032695~negative regulation of interleukin-12 production | ARRB2, C1QBP | 0.020 | 1.690 |
GOTERM_BP | GO:0019369~arachidonic acid metabolic process | ALOX15, LOC101121185 | 0.020 | 1.690 |
GOTERM_BP | GO:0030334~regulation of cell migration | MINK1, ENSOARG00000002682 | 0.075 | 1.128 |
GOTERM_BP | GO:0007286~spermatid development | CCDC42, ZMYND15 | 0.082 | 1.084 |
GOTERM_BP | GO:0007018~microtubule-based movement | DNAH2, KIF1C | 0.093 | 1.029 |
GOTERM_CC | GO:0070847~core mediator complex | MED11, MED28 | 0.020 | 1.690 |
GOTERM_CC | GO:0005737~cytoplasm | NDEL1, LOC101121185, CTNNA3, ENSOARG00000002682, PELP1, INCA1, ZMYND15, ENSOARG00000007066 | 0.037 | 1.427 |
GOTERM_CC | GO:0030139~endocytic vesicle | RABEP1, ARRB2 | 0.049 | 1.313 |
GOTERM_CC | GO:0005819~spindle | NDEL1, MYH10 | 0.081 | 1.092 |
GOTERM_CC | GO:0005829~cytosol | ALOX15, LOC101121185, PIK3R5, STX8, LAP3, ARRB2, C1QBP, MYH10 | 0.082 | 1.086 |
GOTERM_MF | GO:0050473~arachidonate 15-lipoxygenase activity | ALOX15, LOC101121185 | 0.005 | 2.301 |
GOTERM_MF | GO:0016165~linoleate 13S-lipoxygenase activity | ALOX15, LOC101121185 | 0.007 | 2.176 |
KEGG_PATHWAY | oas04062:Chemokine signaling pathway | PIK3R5, ARRB2, CXCL16 | 0.033 | 1.486 |
KEGG_PATHWAY | oas04814:Motor proteins | DNAH2, MYH10, KIF1C | 0.033 | 1.478 |
KEGG_PATHWAY | oas04144:Endocytosis | RABEP1, PLD2, ARRB2 | 0.055 | 1.260 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
Submitted:
03 June 2024
Posted:
04 June 2024
You are already at the latest version
A peer-reviewed article of this preprint also exists.
This version is not peer-reviewed
Submitted:
03 June 2024
Posted:
04 June 2024
You are already at the latest version
Trait | N | Mean | SDa | Minb | Maxc |
---|---|---|---|---|---|
LogFEC1 | 26,638 | 6.63 | 1.14 | 4.60 | 10.51 |
LogFEC2 | 18,971 | 6.64 | 1.13 | 4.60 | 10.87 |
Trait | Method | h2 | ||
---|---|---|---|---|
FEC1 | BLUP | 0.15 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.01 |
SSGBLUP | 0.16 ± 0.01 | 0.66 ± 0.01 | 0.20 ± 0.01 | |
FEC2 | BLUP | 0.15 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.02 |
SSGBLUP | 0.16 ± 0.01 | 0.66 ± 0.01 | 0.19 ± 0.02 |
Trait | Chr a | gVar(%) b | Windows Bounds (pb) | Candidate Genes |
---|---|---|---|---|
FEC1 | 6 | 0.83 | 35,429,074 - 35,554,875 | GPRIN3 |
6 | 0.73 | 37,072,532 - 37,134,706 | LAP3, MED28, FAM184B | |
11 | 0.61 | 26,119,722 - 26,407,016 | MINK1, PLD2, ZMYND15, CXCL16, MED11, ARRB2, PELP1, ALOX15 | |
11 | 0.57 | 27,002,322 - 27,807,356 | DNAH2, LOC101121185, SLC25A35, ODF4, NDEL1, MYH10 | |
25 | 0.49 | 21,324,145 - 22,654,093 | CTNNA3 | |
11 | 0.36 | 25,298,833 - 25,633,178 | WSCD1 | |
6 | 0.30 | 36,066,911 - 36,197,551 | HERC3, PYURF, PIGY, HERC5 | |
21 | 0.30 | 42,654,067 - 42,734,621 | SYVN1, SPDYC, CAPN1 | |
2 | 0.29 | 112,528,931 - 113,355,547 | HERC2, NIPA1, NIPA2, CYFIP1, TUBGCP5, PTPN18, AMER3 | |
11 | 0.28 | 27,811,348 - 28,475,634 | CCDC42, PIK3R5, STX8, USP43 | |
FEC2 | 11 | 1.94 | 26,119,722 - 26,407,016 | MINK1, PLD2, ZMYND15, CXCL16, MED11, ARRB2, PELP1, ALOX15 |
5 | 1.13 | 93,463,383 - 93,482,724 | CAST | |
11 | 0.90 | 27,002,322 - 27,807,356 | DNAH2, LOC101121185, SLC25A35, ODF4, NDEL1, MYH10 | |
11 | 0.77 | 27,811,348 - 28,475,634 | CCDC42, PIK3R5, STX8, USP43 | |
11 | 0.76 | 25,298,833 - 25,633,178 | WSCD1 | |
5 | 0.68 | 93,437,720 - 93,463,383 | CAST | |
6 | 0.64 | 37,072,532 - 37,134,706 | LAP3, MED28, FAM184B | |
6 | 0.53 | 35,429,074 - 35,554,875 | GPRIN3 | |
11 | 0.52 | 25,744,499 - 26,098,771 | C1QBP, RPAIN, NUP88, RABEP1, ZFP3, KIF1C, INCA1, CAMTA2, SPAG7 | |
6 | 0.51 | 37,483,582 - 37,665,116 | - |
Chr | Pos (bp) | Candidate genes |
---|---|---|
6 | 35,511,497 - 37,257,065 | FAM184B, MED28, LAP3, GPRIN3 |
11 | 25,298,833 - 28,475,634 | USP43, STX8, PIK3R5, CCDC42, MYH10, NDEL1, ODF4, SLC25A35, LOC101121185, DNAH2, ALOX15, PELP1, ARRB2, CXCL16, MED11, ZMYND15, PLD2, MINK1, CAMTA2, SPAG7, INCA1, KIF1C, ZFP3, RABEP1, NUP88, C1QBP, RPAIN, WSCD1 |
25 | 22,143,113 - 22,654,093 | CTNNA3 |
Category | Term | Genes | p-value | -log10(p-value) |
---|---|---|---|---|
GOTERM_BP | GO:2001303~lipoxin A4 biosynthetic process | ALOX15, LOC101121185 | 0.005 | 2.289 |
GOTERM_BP | GO:0001764~neuron migration | NDEL1, ENSOARG00000002682, MYH10 | 0.007 | 2.140 |
GOTERM_BP | GO:0019372~lipoxygenase pathway | ALOX15, LOC101121185 | 0.010 | 1.989 |
GOTERM_BP | GO:0043651~linoleic acid metabolic process | ALOX15, LOC101121185 | 0.010 | 1.989 |
GOTERM_BP | GO:0007097~nuclear migration | ENSOARG00000002682, MYH10 | 0.014 | 1.865 |
GOTERM_BP | GO:0032695~negative regulation of interleukin-12 production | ARRB2, C1QBP | 0.020 | 1.690 |
GOTERM_BP | GO:0019369~arachidonic acid metabolic process | ALOX15, LOC101121185 | 0.020 | 1.690 |
GOTERM_BP | GO:0030334~regulation of cell migration | MINK1, ENSOARG00000002682 | 0.075 | 1.128 |
GOTERM_BP | GO:0007286~spermatid development | CCDC42, ZMYND15 | 0.082 | 1.084 |
GOTERM_BP | GO:0007018~microtubule-based movement | DNAH2, KIF1C | 0.093 | 1.029 |
GOTERM_CC | GO:0070847~core mediator complex | MED11, MED28 | 0.020 | 1.690 |
GOTERM_CC | GO:0005737~cytoplasm | NDEL1, LOC101121185, CTNNA3, ENSOARG00000002682, PELP1, INCA1, ZMYND15, ENSOARG00000007066 | 0.037 | 1.427 |
GOTERM_CC | GO:0030139~endocytic vesicle | RABEP1, ARRB2 | 0.049 | 1.313 |
GOTERM_CC | GO:0005819~spindle | NDEL1, MYH10 | 0.081 | 1.092 |
GOTERM_CC | GO:0005829~cytosol | ALOX15, LOC101121185, PIK3R5, STX8, LAP3, ARRB2, C1QBP, MYH10 | 0.082 | 1.086 |
GOTERM_MF | GO:0050473~arachidonate 15-lipoxygenase activity | ALOX15, LOC101121185 | 0.005 | 2.301 |
GOTERM_MF | GO:0016165~linoleate 13S-lipoxygenase activity | ALOX15, LOC101121185 | 0.007 | 2.176 |
KEGG_PATHWAY | oas04062:Chemokine signaling pathway | PIK3R5, ARRB2, CXCL16 | 0.033 | 1.486 |
KEGG_PATHWAY | oas04814:Motor proteins | DNAH2, MYH10, KIF1C | 0.033 | 1.478 |
KEGG_PATHWAY | oas04144:Endocytosis | RABEP1, PLD2, ARRB2 | 0.055 | 1.260 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
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