The encapsulation of microalgae involves trapping the microalgae within coating materials, resulting in the formation of beads. This process offers various advantages, such as promoting controlled release, protecting the formation of bioactive compounds, enhancing bioavailability, and improving solubility [
57]. Various materials such as alginate, chitosan, carrageenan, and polyvinyl, have been used for the immobilization of microalgae [
58]. With
Chlamydomonas, alginate has been the most extensively used for its low cost, biocompatibility, transparency, and permeability, which facilitate the diffusion of nutrients and light [
59]. Additionally, the preparation of alginate beads is a rapid and straightforward process that can be easily scaled up [
60]. The encapsulation of
C. reinhardtii in alginate has been successfully carried out to remove various types of contaminants such as nitrogen, phosphorus, cadmium, lead, and mercury [
61] or even phenol [
62]. In
C. reinhardtii alginate beads, pore size has been shown to be critical for contaminant removal, with the highest removal efficiency obtained with a gel bead pore size of 3.5 mm [
63]. Silica hydrogels have been utilized to entrap
C. reinhardtii cells, offering some advantages over alginate such as higher transparency and greater stability against ions and microbial attacks. Silica hydrogels encapsulating
Chlamydomonas have demonstrated potential for applications such as hydrogen production [
64]. One drawback of alginate encapsulation is its high porosity, which can lead to the release of large molecules. Nevertheless, it has been noted in
C. reinhardtii that the combination of alginate and silica to create hybrid beads can offer enhanced properties that surpass this limitation [
65]. Single-cell encapsulation involves coating individual cells with metal-phenolic networks to create a mechanical barrier. With microalgae, this method was first employed with
C. reinhardtii, finding that this approach helped delay the proliferation of the coated cells and effectively promoted flocculation [
66]. One advantage of encapsulation is that it can be performed with multiple organisms simultaneously, a process known as co-immobilization. The co-immobilization of
C. reinhardtii with the acetate-producing cyanobacteria
Synechococcus sp. PCC 7002 increases the biomass content [
67]. Co-immobilization of
Chlamydomonas and the cyanobacteria
Lyngbya sp. on silica hydrogel exhibited a 92.5% removal of Pb²⁺ from wastewater [
68]. Studies have also shown that in the co-immobilization of
Chlamydomonas with the nitrogen-fixing bacterium
Azospirillum brasilense, there is a mutualistic relationship supported by the exchange of tryptophan and indole-3-acetic acid (IAA), respectively. This relationship increases microalgal CO
2 fixation and biomass production [
69].