2. Key Biochemical Elements of Enzyme Activity
Lck is primarily situated at the plasma membrane within the glycolipid-enriched membrane microdomains (GEMs), intimately connected to the TCR-mediated signal transduction [
7]. The GEMs are enriched in highly phosphorylated active forms of signaling components of TCR/CD3, T-cell receptor (TCR)–ζ chain-associated 70 kDa tyrosine phosphoprotein (ZAP-70), SH2-domain-containing leukocyte protein of 76 kDa (SLP-76), and phospholipase Cγ1 [
8]. The activation of biochemical signaling pathways is triggered by TCR/coreceptor engagement, which governs the outcome of the T cell response in conjunction with signals from costimulatory molecules and cytokine receptors [
8]. Lck is the first kinase involved in this process and a fundamental component of T-cell response. Although antigen presentation and TCR engagement are crucial for Lck activation, they are not essential, as was demonstrated in multiple studies where a small pool of Lck was found to be active without antigen presentation [
5,
6,
7,
8]; therefore, tight regulation of Lck activity is critical to maintaining physiological T-cell responses [
6].
Figure 1 illustrates the critical parts of the enzyme structure [
1]. The membrane binding motif is essential for most antigen-dependent lymphocytes. The N-terminal Src homology 4 (SH4) domain is crucial for membrane anchoring. The domain SH4 is always myristylated at glycine position 2 and can be reversibly palmitoylated [
8,
9,
10,
11]. Palmitoylation was found to be contingent on myristylation. LCK is palmitoylated on Cys3 and Cys5 by zDHHC2 and zDHHC21 enzymes, critical for its plasma membrane targeting and T-cell activation. Additionally, PLC-γ1 and LAT undergo S-palmitoylation, contributing to T-cell signaling. Amino acids 7-35 are the binding domain to CD4 and CD8α cytoplasmic tails [
9,
10]. Within the domain, two cysteines are involved in Zn2+ binding to form a complex; “zinc clasp.” This Zn domain seems critical for enzyme activity and T-cell responses [
1,
10]. The checkpoint inhibitor LAG-3 also competes with the Zn clasp of TCR and Lck [
12].
As illustrated in
Figure 1, the enzyme's SH4 domain is followed by a Unique domain (UD), domains SH3 and SH2, a short proline-rich linker region, and a catalytic (tyrosine kinase) domain SH1 preceding the short C-terminal tail. SH3 and SH2 domains regulate the catalytic domain's conformational changes through proline-rich and phosphotyrosine-containing motifs. Thus, the phosphorylation of specific residues and the regulatory SH3 and SH2 domains control Lck activity [
7,
13,
14,
15]. Lck phosphorylation can be cis-phosphorylated by another molecule or trans-phosphorylation, phosphorylation by another molecule of Lck [
12,
13]. There is the inhibitory C-terminal residue Y505, an activating residue in the kinase domain Y394; however, there are other phosphorylated residues, residue Y192, and 4 serine residues, S42, S59, S158, and S194 (
Figure 1). Phosphorylation at Y192 maintains the structure open, while the serine phosphorylation depends on PKA or PKC kinase activity, S42, and ERK activity, S59 [
15,
16]. The phosphorylated S59 residue seems involved in mitotic events leading to cell proliferation [
16]. It is not clear what the role of the other two serine residues is; however, there seems to be a result of transphosphorylation [
15]. In general, the activation mechanisms of LCK can vary depending on the specific signaling pathways and the cellular context.
Wu et al. [
17] observed that asparagine directly binds to LCK and functions as a signaling molecule in CD8+ T cells. They reported that the Asn binding site in the Lck structure lies within the catalytic domain (residues 240-320). Asn favors Y394 over Y505 phosphorylation, promoting T-cell activation and memory response [
17]. A similar effect on regulatory residues was reported in disulfiram (DSF), which was repurposed and enhanced the anti-tumor immunity of CD8+ T cells. DSF, as a Zinc finger active compound, interacts with Lck through a direct covalent bond via Cysteine 20/23 residue and promotes the Y394 phosphorylation, elevating Lck activation and immobilization of active Lck [
18].
The enzyme's activity in physiologic conditions depends on CD45 and Csk. The role of the phosphatase CD45 and the Csk kinase on Lck activity have been studied in detail [
19,
20,
21]. CD45 causes Lck to unfold via dephosphorylation of the Y505, allowing for the trans-autophosphorylation of Y394, leading to the full activation of Lck [
14,
19]. Its activity is not regulated through the phosphorylation of its kinase domain. Instead, it is allosterically activated when its SH2 domain interacts with SFK-phosphorylated motifs. CD45 can dephosphorylate tyrosine residues in C-terminal Y505 and, in the kinase domain, Y394, and its activity is > 20-fold faster than Lck in an in vitro reconstitution study documented by Hui and Vale [
22]. However, Lck phosphorylation on the SH2 domain at tyrosine 192 decreases the regulatory effect of CD45 on Lck [
23,
24,
25], implying that Y192 phosphorylation regulates Lck activity independently of CD45. Courtney and co-workers [
24] have shown negative feedback of phosphorylated ZAP70 on Lck due to the phosphorylation of Y192. The phosphorylation renders Lck resistant to CD45 dephosphorylation but unable to be properly activated. The critical issue is that the Lck structure could be open independently of CD45, and the CD45-resistant phosphorylation impairs T-cell response (
Figure 3).
Figure 2.
The model represents the different conformational and functional models of Lck. The open structure (A) shows the kinase active domain phosphorylated at Y394. This structure differs from the primed structure (B) in which the enzyme has an active conformation, but the Y394 residue is not phosphorylated. However, this structure can be cis or trans-phosphorylated. The open structure may have the residue Y192 phosphorylated (see
Figure 3 for the physiological relevance). Double phosphorylation of Y394 and Y505 is possible, rendering an active enzyme that differs from the closed state on the right (D). It is unclear if the enzyme can be phosphorylated in the three tyrosine residues or if serine phosphorylation affects the kinetics of the active conformation. The figure was done using Bio Render software.
Figure 2.
The model represents the different conformational and functional models of Lck. The open structure (A) shows the kinase active domain phosphorylated at Y394. This structure differs from the primed structure (B) in which the enzyme has an active conformation, but the Y394 residue is not phosphorylated. However, this structure can be cis or trans-phosphorylated. The open structure may have the residue Y192 phosphorylated (see
Figure 3 for the physiological relevance). Double phosphorylation of Y394 and Y505 is possible, rendering an active enzyme that differs from the closed state on the right (D). It is unclear if the enzyme can be phosphorylated in the three tyrosine residues or if serine phosphorylation affects the kinetics of the active conformation. The figure was done using Bio Render software.
Figure 3.
The figure depicts the role of CD45 and other phosphatases on Lck phosphorylation at residue Y192. The phosphorylation can be dependent (susceptible) to CD45 dephosphorylation, or it can be resistant to phosphorylation and maintain the enzyme in close conformation. The thick lines correspond to the preferential enzyme function, the physiological response. Other phosphatases can dephosphorylate residues Y192, Y384, and Y505 generate a nonfunctional enzyme. The figure was made using Bio Render software.
Figure 3.
The figure depicts the role of CD45 and other phosphatases on Lck phosphorylation at residue Y192. The phosphorylation can be dependent (susceptible) to CD45 dephosphorylation, or it can be resistant to phosphorylation and maintain the enzyme in close conformation. The thick lines correspond to the preferential enzyme function, the physiological response. Other phosphatases can dephosphorylate residues Y192, Y384, and Y505 generate a nonfunctional enzyme. The figure was made using Bio Render software.
The Csk kinase catalyzes the transfer of the phosphate group to the Y505 residue that interacts with the SH2 domain and enables the SH3 domain to engage with the proline-rich linker region; the enzyme goes to a “closed” inactive state [
21]. The Csk kinase can bind to phosphatases PTPN12 (PTP-PEST) and immune-cell PTPN22 (LYP/Pep) that promote autoinhibition by dephosphorylating the activation loop [
26]. As a cytosolic protein, Csk lacks the membrane-anchoring lipid-binding sites. This raises the need for a recruiter Csk-binding protein to ensure its localization at the plasma membrane for effective negative regulation of Lck activity [
21,
26]. These proteins include Csk binding protein/phosphoprotein associated with glycosphingolipid-enriched microdomains (CBP/PAG1), Fak, Paxillin, and the Dok family [
21,
26,
27]. Once it is open, the likelihood of Y505 trans-autophosphorylation/phosphorylation is low, suggesting that phosphatases are crucial in closing the structure [
21,
26,
27].
Two adaptor proteins, LIME (Lck interacting molecule) and PAG (glycosphingolipid-enriched microdomains), have been involved in Csk inhibition of Lck activity [
28,
29,
30]. LIME is involved in the inflammatory response [
28]. The putative mechanism of Lck negative regulation/inhibition stems from PAG1 phosphorylation loss upon TCR stimulus while being abundantly phosphorylated in unstimulated T cells, which allows Csk to dissociate from PAG1
/engage with Lck at the membrane, respectively [
30]. Both adaptor proteins serve as membrane anchors for the Csk enzyme, facilitating the effect of Csk on the C terminal of Lck and the closure of the enzyme. As depicted in
Figure 4, the adaptor proteins recruit Csk in both cases, which is responsible for phosphorylating Lck. The critical issue is the binding of Csk to the phosphorylated residues of both adaptor proteins. Csk interaction with Lck may be modified depending on the interaction with other kinds of kinases depending on the SH2 and SH3 domains.
In severe combined immunodeficiency, ZAP70 cysteine 564 seems to have a regulatory function and is involved in TCR and Lck activation [
31]. Cysteine residues outside the catalytic domains of protein tyrosine kinases are critical for enzyme activity. Reversible modifications such as nitrosylation, sulfonation, and glutathionylation have modulated kinase activity [
32,
33,
34,
35]. These modifications can be important in enzyme catalytic activity and in enhancing alterations in cell metabolism, leading to malignancy [
36].
Signal transduction is induced upon antigen binding to the CD3/TCR receptor in CD4 or CD8 cells in normal physiological conditions [
14]. The generation of signal transduction upon Lck activation and the involvement of TCR phosphorylation, ZAP70, and the adaptor protein LAT has been extensively reviewed [
14]. New elements indicate that the enzyme may be more active when not attached to the membrane [
37]. The enzyme's activity differs in different T-cell subpopulations [
38]. The regulatory T cells were shown to have less active Lck than committed T helper or cytotoxic cells [
39]. Moreover, with age, Lck activation through co-receptors may be decreased. Co-activating molecules like CD28 may play an important role in this effect [
40,
41]. Also, cytomegalovirus infection has decreased CD8 activity by affecting CD28 signaling [
42], and mice lacking CD28 have higher cytotoxic responses [
43]. In the T cell receptor activation dynamic, Lck is more active in CD8 cells mature cells than CD4 mature cells, suggesting that Lck activation is critical in CD8 cytotoxic response [
38,
44].
Figure 4 illustrates the effect of antigen recognition, Lck activation, and the dynamic of signal transduction. The Figure only represents a partial process in which Lck is involved. The coreceptors also can recruit Lck and other kinases to amplify the antigen-induced signal. On the other hand, CTLA-4 recruits the phosphatase SHP-2, which similarly dephosphorylates Lck as PD1 [
36,
37] (
Figure 5).
The complex DAP10/Syk plays a major role in NK-induced cytotoxic activity. However, the Wiskott–Aldrich Syndrome protein (WASP) phosphorylates Lck at position Y141 and inhibits enzyme activity and NK cell cytotoxicity, suggesting that Lck, besides Syk, is involved in cytotoxic responses independent of TCR and CD/CD8 antigens [
45].
Figure 6 illustrates the possible link between Lck and NKG2D receptors for NK cell signal transduction involved with cytotoxicity.
Figure 6 illustrates the role of Lck in the induction of CD314.
SHP-1 and SHP-2 recruited by inhibitory receptors are key negative regulators of proximal TCR signaling. They can dephosphorylate multiple crucial cascade elements, including Lck (on the Y394 residue), TCR ITAMs, and ZAP-70 [
46,
47,
48]. The PD-1 (CD279) receptor ligation leads to PAG1 tyrosine-phosphorylation and recruitment of Csk or the phosphorylation of SHP-2, which dephosphorylates Lck, and inhibits it [45-47}. The interactions are critical for cancer chemotherapy [
49,
50]. Posttranslational modifications may be important in finding new therapeutic targets [
51]. In activated T cells, Lck was co-immunoprecipitated with the TRAIL-R/SHP-1 complex [
51]. The involvement of TRAIL led to the interruption of proximal TCR signaling, as it hindered the Y394 Lck phosphorylation and dampened the Lck recruitment to the lipid rafts [
52]. Thus, TRAIL-R could be a new type of immune checkpoint receptor that can limit T cell activation. The TRAIL-R/SHP-1 axis could be a potential target for treating immune-mediated diseases.
Figure 7 illustrates checkpoint inhibitors' effects on two different inhibition types: the interaction of PD1/PDL-1 or PDL-2 and the inhibitory receptor LAG-3 [
53]. LAG-3 is expressed in exhausted cells and binds to the TCR CD4/CD8 cluster, decreasing the pH and binding to the zinc pocket [
54]. LAG-3 can bind to different glycan structures, including galectin and α synuclein [
53], suggesting it could be an important modulator of tumor-infiltrating lymphocytes. The inhibition of the LAG-3 signal through antibodies has been suggested for therapy, and bi-specific antibodies against PD1 and LAG3 were postulated to have a brother effect in hematological and solid tumors [
55].
Lck has been shown to bind to CD2, CD5, CD44, CD48, CD55, CD146 and CD160 [
1]. These receptors are involved in several biological responses. CD2/LFA-3 is an interesting complex critical in immunological synapses, and CD2 is preferentially expressed in memory cells [
56]. CD2 interacts with Lck and Fyn, forming the lipid raft crucial for T-cell response [
57]. CD5 can also be phosphorylated by Lck and is involved in lymphocyte signal transduction, particularly in B lymphocytes [
58]. The role of Lck in B cell malignancies is noted but difficult to analyze due to the low proportion of the kinase compared to Btk. It would be interesting to analyze possible scenarios for the role of Lck in B cell physiological responses.
CD44 is a cell surface adhesion receptor upregulated in primed naïve T lymphocytes and highly expressed in T memory cells [
59]. Lck is bound to the intracellular site of the intracellular domain side of the receptors, which can be triggered by hyaluronic acid and, with less affinity with other extracellular matrix glycosaminoglycans and proteoglycans [
59]. It is also highly expressed in tumors, cancer stem cells, and metastatic sites [
60], and different isoforms may have different functions on cell physiology and pathology [
61]. CD44 expression in tumor cells could be related to poor survival; however, there are still controversies on the receptor and the possible role of Lck in cell migration and physiological responses.
CD146 (MCAM-melanoma cell adhesion molecule), a cell surface adhesion molecule for Laminin 411, has also been related to Lck activity. In mouse T cells, CD146 deficiency impairs thymocyte development and peripheral activation. CD146 interacts with LCK and can be found in monomeric and dimeric forms in T cells, with the dimerized form increasing after TCR ligation. Dimerized CD146 recruits LCK and promotes LCK autophosphorylation. In tumor models, CD146 deficiency dramatically impairs the antitumor response of T cells [
62]. T cells expressing CD146 in humans are mainly responsible for IL-17 production [
63]. Inhibition of Lck in the psoriatic mice model has shown improvement [
64]. These results generate new elements in which free Lck can bind to different receptors and activate signal transduction signals dependent on the vicinity of other kinases and proteins mainly through the SH2 and SH3 domains, but also with the zinc pocket in the SH4 domain, which may allow the protein to interact independently of the membrane anchors and facilitates lymphocyte activation, T and NK cell.
CD48, a member of the SLAM family of proteins, is a known B and T cell marker involved in cell activation and interaction [
65]. The molecule is also expressed in macrophages at inflammatory sites. CD48 can interact with CD2 or CD244 [
65]. CD48 cooperates with Lck in the lipid raft, but CD2 may also facilitate the cis interaction of the kinase in the CD2:CD48 binding [
66], but also in CD2:CD244 stimulation, leading to a reasonable supposition that Lck can be involved in physiological and pathological responses based on receptor expression. Also, in the immune synapse, it is difficult to conceive which interaction would be prevalent in the priming, activating, or maintaining T cytotoxic responses against tumor cells.
The decay accelerating factor (CD55) is involved in the complement pathway, but it is also a potent activator of naïve CD4 T lymphocytes and is involved in tumor cell growth [
67]. The interaction between CD55 and Lck seems to depend upon the lipid rafts formed upon cell binding, which may predispose the interaction of the enzyme with the adaptor protein LIME or the counteraction with the orphan receptor ROR2. Inhibition of Lck sensitizes endometrioid tumors to cisplatin [
68]. A similar mechanism can probably be proposed for other epithelial tumors in which cell interaction is important in chemoresistance.
A vital cell marker for CD8 and NK cells related to cytotoxic efficiency is CD160 [
68]. There are two isoforms, one transmembrane and another linked to the membrane by GIP. Lck has been linked to the transmembrane form of CD160 [
68]. The antigen is also expressed in B-cell hematologic and mammary tumors [
70]. It has been indirectly proposed that this interaction in tumors can lead to new therapeutic strategies since higher tumor Lck expression and survival in several tumors [
71,
72]. However, it is important to note that Lck inhibition has been shown to decrease metastatic potential invasion in oral cancer
In addition to the above receptors and proteins, Lck also binds to other effector molecules such as VAV1, RASA1, and FYB1 and protein kinases, including AXL, RAF1, Fyn, Syk, and PI3K, via its SH3 domain and to the tyrosine-phosphorylated form of KHDRBS1/p70 via its SH2 domain. These bindings highlight the non-unique event of Lck role in cell physiological responses.
Figure 8 highlights the effect of Lck activity on multimerization of the Calcium channel transporter TRPM8 in pancreatic and mammary cancer [
74]. It is unknown if the up-regulated Lck escapes from normal physiological control; the specific Lck inhibitors may facilitate, as in other tumors, the effect of other drugs to enhance tumor clearance. Modulation of Lck activity entails an intricate interplay of membrane localization, phosphorylation, protein-protein interactions, and the influence of supporting molecules.
5. Pharmacological Modulation of Lck Activity
Protein kinase inhibitors (PKIs) are crucial in treating various cancers and inflammatory conditions. The list of inhibitors that can affect Lck catalytic activity among other kinases includes dasatinib, imatinib, bosutinib, ponatinib, masitinib, ceritinib, crizotinib, fostamatinib (used on thrombocytopenia), tribanibulin (inhibit tubulin), and sacaritinib (now proposed for non-cancer therapy), as well as the experimental drugs A-770041 and WH-4-23. Even though most inhibitors are not specific, pan tyrosine kinase inhibitors have changed the landscape of targeted cancer therapy [
92,
93,
94,
95,
96], and the structures and main biological effects have been documented [
92,
93,
94,
95,
96]. As described earlier, several solid tumors have high expression of Lck, and inhibiting the kinase activity can make the tumor more susceptible to other anti-cancer drugs.
A prediction model for Lck inhibition has been developed, and it is reasonable for assessing enzyme activity in different models based on the structures [
97]. The development of new compounds should probably focus on the enzyme's kinase activity, membrane anchor, and zinc pocket elements in the SH4 domain.
Imatinib is used in malignant gastrointestinal stromal tumors (GIST) [
96,
97,
98,
99,
100]. Imatinib plus binimetinib (MEK kinase inhibitor) were used in the first-line treatment of advanced GIST [
101]. Nilotinib is active in KIT-mutant metastatic acral and mucosal melanoma [
101]. Bosutinib and pemetrexed (antifolate drug) were administrated in patients with advanced metastatic solid tumors (adenocarcinoma of the lung, adenocarcinoma of the appendix, and urothelial carcinoma) that had progressed on "standard of care" chemotherapy in a phase I study with some success [
102]. In patients with advanced pancreatic ductal adenocarcinoma and overexpression of acyl-CoA oxidase-1 (ACOX1), gemcitabine plus masitinib showed a better OS in comparison with gemcitabine plus placebo [
103]. Median survival was significantly longer for patients with advanced imatinib-resistant GIST receiving masitinib, followed by post-progression addition of sunitinib when compared against patients treated directly with sunitinib in second-line [
103,
104]. Also, masitinib is effective as a first-line treatment of advanced GIST with comparable results to imatinib regarding safety and response [
105]. Promising results were observed using nilotinib in KIT-driven advanced melanoma, a condition with very few therapeutic options [
73,
106]. Moreover, Lck was shown to be involved in invasion and metastasis in oral cancer, and the specific inhibitors can be a useful therapy in these patients [
107]. In summary, several studies emphasize the effect of tyrosine kinase inhibitors in different solid tumors in which Lck may play an important role. The question also arises of whether the structures have other biological functions that could be used for treatment. As an example of drug repurposing, Barwal A and coauthors showed that ponatinib could bind to PD-1 and inhibit the interaction with PDL-1/2 [
108]. There is still room for improvement in cancer therapy using these inhibitors.
Concerning the new structures, A-770041 has been found to inhibit CTV-1 cells (an acute myeloid leukemia cell line) [
109], and treatment of human glioma stem cells with A-770041 has crizotinib, resulted in significant inhibition of self-renewal and tumor-sphere formation [
110]. WH-4-23, a potent inhibitor for Lck, also inhibits CTV-1 cells [
109]. Crizotinib is a TKI that potently inhibits Lck, anaplastic lymphoma kinase (ALK), mesenchymal-epithelial transition (MET), and ROS proto-oncogene receptor 1, tyrosine Kinase (ROS1) {109, 111]. Crizotinib is well tolerated with rapid and durable responses in patients with ALK-positive non-small-cell lung cancer [
112] and superior to chemotherapy [
113]. Tanaka A and coworkers [
114] showed that imatinib selectively depleted effector T reg (eT reg) cells and significantly increased effector/memory CD8+ T cells, enhancing the antitumor response. New structures or drug repurposing can enhance therapeutic efficiency in solid tumors.
It is also essential to address the issue that Lck inhibitors may be beneficial for treating immune-related disorders and not only as an anti-tumor treatment. Several T-cell-dependent responses can be inhibited, such as autoimmunity, inflammatory diseases, and organ transplant rejection [
116,
117]. This effect could be due to FoxP3-dependent much lower expression of Lck and ZAP-70 in T reg cells compared with other T cells. Imatinib inhibition of Lck further reduced their TCR signal intensity, rendering them selectively susceptible to signal-deprived apoptosis [
114]. Other inflammatory diseases, such as lung fibrosis, asthma, rheumatoid arthritis, and diabetes, can be treated with Lck inhibitors [
116,
117,
118]. On the other hand, calcineurin inhibitors target Lck activation in graft vs. host disease [
119], generating questions concerning treatment effectiveness and selectivity.
Nilotinib in patients with cGVHD steroid-dependent/refractory cases was associated with a substantial decrease in proinflammatory cytokines, a better outcome of bone marrow transplant [
120,
121]. Moreover,
Nilotinib has been used to prevent cytomegalovirus (CMV) infection in patients with allogeneic hematopoietic stem cell transplantation by blocking platelet-derived growth factor receptor-alpha, a critical receptor for this virus [122].