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22 August 2024
Posted:
26 August 2024
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Accessiona | Species name | Origin and harvest year | Sourceb/collector |
---|---|---|---|
PI1*,$ | A. pinnata subsp. imbricata | Philippines, Sto Domingo, Albay, 1975 | IRRI |
PI2 | Malaysia, Bumbong Lima, Butterworth, 1977 | IRRI | |
PI23 | India, Cuttack, Orissa, 1978 | CRRI | |
PI68 | Sri Lanka, Tissa, 1984 | S. Kulasooriya | |
PI102 | Japan, Okinawa, 1987 | O. Mochida | |
PI503 | Australia, Murdoch, 1978 | M. Dilworth | |
PI531 | Indonesia, Bali, 1983 | - | |
PI540 | China, Putian, 1989 | C. van Hove | |
FI1001* | A. filiculoides | East Germany (ex- GDR), 1979 | IB China |
FI1008 | USA, Cranmore Road, Sutter Co., California, 1981 | D. Rains | |
FI1010 | Peru, PUFFI, Lima, 1982 | CIAT | |
FI1042 | Brazil, Parana, 1987 | I. Watanabe | |
FI1052 | South of France, North of Lyon, 1989 | P. Roger | |
FI1090 | Japan, Tanabe-cho, 1992 | S. Kitoh | |
FI1501 | Belgian, Harchies, 1987 | A. Lawalree | |
FI1505 | South Africa, Verwoerd dam, 1987 | D. Toerien | |
FI1507$ | Colombia, Zipaquira, 1987 | Y. Lopez | |
FI1522 | Switzerland, Zurich Botanical Garden, 1987 | - | |
FI-BGLU | Botanical Garden of Lisbon University, 2009 | A.L. Pereira | |
FI-BGM | Botanical Garden of Madeira, Funchal, 2010 | C. Lobo | |
ME2001* | A. mexicana | USA, Graylodge, California, 1978 | D. Rains |
ME2008 | Colombia, CIAT, Cali, 1982 | CIAT | |
ME2011 | Japan, Osaka, 1984 | T. Lumpkin | |
ME2026$ | Brazil, Solimoes river, Pacencia Island, Iranduba, Amazonas (BLCC 18), 1984 | T. Lumpkin | |
CA3001*,$ | A. caroliniana | USA, Ohio, 1978 | D. Rains |
CA3017 | Brazil, Rio Grande do Sul, 1987 | I. Watanabe | |
CA3502 | Egypt, Moshtohr University, 1987 | C. Myttenaere | |
CA3507 | Suriname, Boxel, 1987 | H. Lardinois | |
CA3513 | Zimbabwe, Causeway Botanical Garden, 1987 | T. Muller | |
CA3524 | Holland, 1987 | E. Ohoto | |
CA3525 | Ruanda, Cyili Rice Research Center, 1987 | C. van Hove | |
MI4018* | A. microphylla | Paraguay, 1981 | D. Rains |
MI4021$ | Equator, Santa Cruz Island, Galapagos, 1982 | T. Lumpkin | |
MI4028 | Philippines, hybrid (MI4018xFI1001), 1985 | Do Van Cat | |
MI4054 | Brazil, Baía, 1987 | I. Watanabe | |
MI4510 | Philippines, Los Baños, IRRI, 1987 | C. van Hove | |
NI5001*,$ | A. nilotica | Sudan, Kosti, 1982 | T. Lumpkin |
NI5002# | Sudan, Kosti, 1989 | T. Lumpkin | |
NI5501 | Burundi, Bujumbura, 1987 | J. Bouharmont | |
RU6010* | A. rubra | New Zealand, Nouville, 1986 | C. van Hove |
RU6502 | Australia, Victoria (37.40S-144.40E), 1985 | - | |
RU6503 | New Zealand, between Lumdsen and Kingston, 1986 | C. van Hove | |
PP7001*,$ | A. pinnata subsp. pinnata | Australia, Kakadu Northern Park Northern Territory, 1982 | Yatazawa |
PP7506 | Sierra Leone, 1982 | C Dixon | |
PP7509 | Nigeria, Moor plantation, 987 | C. van Hove | |
PP7511 | Guinea-Bissau, Contuboel, 1987 | H. Diara | |
PP7512 | Zaire, Kisantu, 1987 | B. Bruyneel | |
PP7546 | Madagascar, Antsahavory, East zone, 1991 | C. van Hove |
Gene | Primer | Sequence primer (5’→3´) | Size (bp) | Reference |
---|---|---|---|---|
Saxitoxin (sxt) | SXT683F | GGATCTCAAACATGATCCCA | 195 | Lopes et al. 2012 |
SXT877R | GCCAAACGCAGTACCACTT | |||
Cylindrospermopsin (cyl) (poliketide synthase) | K18F | CCTCGCACATAGCCATTTGC | 422 | Schembri et al. 2001 |
M4R | GAAGCTCTGGAATCCGGTAA | |||
Cylindrospermopsin (cyl) (peptide synthase) | M13 | GGCAAATTGTGATAGCCACGAGC | 597 | Fergusson 2003 |
M14 | GATGGAACATCGCTCACTGGTG | Schembri et al. 2001 | ||
Microcystin/Nodularin synthetase (mcyE/ndaF) | HepF | TTTGGGGTTAACTTTTTTGGCCATAGTC | 472 | Jungblut 2006 |
HepR | AATTCTTGAGGCTGTAAATCGGGTTT | |||
Microcystin synthetase (mcy A) | mcyA-Cd1F | AAAATTAAAAGCCGTATCAAA | 297 | Hisbergues et al. 2003 |
mcyA-Cd1R | AAAAGTGTTTTATTAGCGGCTCAT | |||
Microcystin synthetase (mcy B) | 2959F | TGGGAAGATGTTCTTCAGGTATCCAA | 350 | Nonneman & Zimba 2002 |
3278R | AGAGTGGAAACAATATGATAAGCTAC | |||
Microcystin (mcy C) | FAA | CTATGTTATTTATACATCAGG | 758 | Neilan 1999 |
RAA | CTCAGCTTAACTTGATTATC | |||
Microcystin (mcy B, domain A) | 2156F | ATCACTTCAATCTAACGACT | 955 | Mikalsen 2003 |
3111R | GTTGCTGCTGTAAGAAA | |||
Microcystin (mcy C, domain A) | PSCF1 | GCAACATCCCAAGAGCAAAG | 674 | Ouahid 2005 |
PSCR1 | CCGACAACATCACAAAGGC | |||
Microcystin (mcy D, domain ACP) | PKDF1 | GACGCTCAAATGATGAAACT | 647 | Ouahid 2005 |
PKDR1 | GCAACCGATAAAAACTCCC | |||
Microcystin (mcy D, domain KS) | PKDF2 | AGTTATTCTCCTCAAGCC | 859 | Ouahid 2005 |
PKDR2 | CATTCGTTCCACTAAATCC | |||
Microcystin (mcy E, domain GSA-AMT) | PKEF1 | CGCAAACCCGATTTACAG | 755 | Ouahid 2005 |
PKER1 | CCCCTACCATCTTCATCTTC | |||
Microcystin (mcy G, domain CM) | PKGF1 | ACTCTCAAGTTATCCTCCCTC | 425 | Ouahid 2005 |
PKGR1 | AATCGCTAAAACGCCACC |
Gene | Initial denaturation | Denaturation | Annealing | Extension | Final extension | Reference |
---|---|---|---|---|---|---|
sxt | 94°C; 3 min | 35 cycles | 72°C; 7 min | Lopes et al. 2012 | ||
94°C; 10 s | 52°C; 20 s | 72°C; 1 min | ||||
cyl | 94°C; 10 min | 30 cycles | 72°C; 7 min | Fergusson 2003 | ||
94°C; 30 s | 55°C; 30 s | 72°C; 7 min | ||||
mcyE/ndaF | 92°C; 2 min | 35 cycles | 72°C; 5 min | Jungblut 2006 | ||
92°C; 20 s | 56°C; 30 s | 72°C; 1 min | ||||
mcy A | 95°C; 2 min | 35 cycles | 72°C; 7 min | Hisbergues et al. 2003 | ||
95°C; 90 s | 56°C; 30 s | 72°C; 50 s | ||||
mcy B | 94°C; 2 min | 35 cycles | 72°C; 5 min | Nonneman 2002 | ||
94°C; 30 s | 59°C; 45 s | 72°C; 1 min | ||||
mcy C | 94°C; 2 min | 35 cycles | 72°C; 7 min | Neilan 1999 | ||
94°C; 10 s | 50°C; 20 s | 72°C; 1 min | ||||
mcy B, domain A | 94°C; 4 min | 30 cycles | 72°C; 7 min | Mikalsen 2003 | ||
95°C; 30 s | 52°C; 30 s | 72°C; 1 min | ||||
mcy C, domain A | 94°C; 5 min | 35 cycles | 72°C; 7 min | Ouahid 2005 | ||
95°C; 1 min | 52°C; 30 s | 72°C; 1 min | ||||
mcy D, domain ACP | 94°C; 5 min | 35 cycles | 72°C; 7 min | Ouahid 2005 | ||
95°C; 1 min | 52°C; 30 s | 72°C; 1 min | ||||
mcy D, domain KS | 94°C; 5 min | 35 cycles | 72°C; 7 min | Ouahid 2005 | ||
95°C; 1 min | 52°C; 30 s | 72°C; 1 min | ||||
mcy E, domain GST-AMT | 94°C; 5 min | 35 cycles | 72°C; 7 min | Ouahid 2005 | ||
95°C; 1 min | 52°C; 30 s | 72°C; 1 min | ||||
mcy G, domain CM | 94°C; 5 min | 35 cycles | 72°C; 7 min | Ouahid 2005 | ||
95°C; 1 min | 52°C; 30 s | 72°C; 1 min |
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