2. Mycoplasma bovis
Mycoplasma bovis, first isolated in 1961, has long been associated with a range of clinical diseases including mastitis, arthritis, keratoconjunctivitis and calf pneumonia. Because of the numerous viral and bacterial pathogens linked to BRD, its role was overlooked for many years owing to the difficulties in identifying this relatively fastidious organism in diseased tissues. It is now well accepted as one of the primary pathogens of BRD and found wherever cattle are kept particularly in feedlot and other intensive cattle rearing systems. Recent studies have confirmed the undisputed role of
M. bovis in the aetiology of BRD. One of these studies covered 156 BRD outbreaks from 120 farms within 30 provinces of Spain [
13]. Only diseased animals showing symptoms of BRD were analyzed. The animals came from different age groups, i.e.
, pre-weaned calves, fattening beef calves, adult and unclassified animals. The presence of nine BRD-associated pathogens, including viruses (BCV, PI-3, BRSV, BVDV and BHV-1) and bacteria (
M. bovis,
P. multocida,
M. haemolytica and
H. somni), was determined in the tested samples using individual q-PCRs. In this study
M. bovis was the second most common pathogen after
P. multocida identified from the BRD outbreaks.
M. bovis was detected in 77% of 121 outbreaks with confidence interval of 95% ranging between 70.2 and 83.6%. Based on the frequency of detection of the tested respiratory pathogens, the outbreaks were divided into two clusters using a hierarchical cluster analysis. In cluster 1,
M. bovis and identified viruses were detected more frequently than in the total number of outbreaks. In cluster 2, the percentage of mycoplasmas and viruses detected was significantly lower. It is worth emphasizing that in cluster 2, where the presence of identified viruses was much lower than in cluster 1, the share of
M. bovis was still significant (72.6% of the 106 outbreaks; Further analysis including animal category and seasonality which showed significantly more BRD outbreaks occurred in pre-weaned calves during winter (between December and March) in cluster 1 compared to cluster 2 where the lack of seasonality and the dominance of outbreaks in older animals (fattening beef calves) were observed. Overall,
M. bovis appeared to be the primary cause of BRD in cluster 2 outbreaks, although the frequency of its detection in cluster 1 outbreaks was also significant; however the mycoplasma always co-infected with the viral agent [
13].
A subsequent study confirmed the significant role of
M. bovis alongside viruses associated with BRD in the aetiology of the disease [
14]. This study examined nasal swabs from 89 calves with clinical signs of BRD from 28 Japanese farms. All calves were tested for the presence of 12 BRD-associated pathogens including eight viruses: BVDV, BCoV, bovine torovirus (BToV), bovine adenovirus (BAdV), BRSV, BPIV3, bovine influenza D virus (BIDV) and bovine herpes virus 1 (BHV1) as well as four bacteria:
M. bovis,
M. haemolytica,
P. multocida and
H. somni using multiplex real-time RT-PCR (multiplex RT-qPCR). In the calves with clinical signs consistent with BRD,
M. bovis was detected in 23.6% of 89 samples and was most often detected in co-infection with other microorganisms, both viral and bacterial. Single detection of
M. bovis was observed in two diseased calves [
14].
A significant role for
M. bovis in co-infection with
M. haemolytica in the acute stage of BRD was demonstrated in feedlot cattle [
8]. Apart from
M. bovis, the presence of other BRD-associated pathogens, such as BRSV,
H. somni,
M. haemolytica and
P. multocida, was determined in the tested samples. This study showed a subsequent increase in the prevalence of
M. haemolytica in the upper respiratory tract of feedlot cattle following infection by
M. bovis. An increased prevalence of
M. bovis was observed in the initial period (during the first two weeks) after the arrival of cattle to the feedlot; hence in this study
M. bovis not only had a direct role in the aetiology of acute BRD, but also through its impact on the composition of the respiratory microbiome [
8].
An analysis of the nasal microbiome in 58 BRD-affected steers kept in one feedlot in the US showed a significant role for
M. bovis in disease development [
12]. In this study the increase in relative abundance of
Mycoplasma spp. in the BRD cases was observed.
Mycoplasma spp. was the third most relative abundant genus in the nasal microbiome of cattle displaying BRD, following the genera
Mannheimia and
Moraxella. However, the genera
Moraxella and
Mannheimia were also among the four most relative abundant genera in healthy steers, in contrast to the genus
Mycoplasma. Detailed analysis demonstrated higher prevalence and abundance of
M. bovis in the nasal cavity of BRD-affected animals compared to healthy ones. Similar results were observed for
M. haemolytica, which may indicate the co-occurence of the bacteria in the BRD cases. Additionally, the association between
M. bovis and
Corynebacterium was shown in the BRD steers with higher co-occurrence probability than in healthy animals [
12].
The important role of
M. bovis in the aetiology of BRD in feedlot cattle was confirmed in one of the recent studies [
9]. Regardless of the type of samples analysed (nasopharyngeal or trans-tracheal samples), a significantly higher frequency of
M. bovis was detected in cattle with BRD compared to healthy animals with tracheal samples showing the highest prevalence. Detailed analysis including other bacteria responsible for BRD, such as
P. multocida,
M. haemolytica and
H. somni, showed that
M. bovis was the second most common pathogen after
P. multocida in the analyzed BRD cases [
9,
20].
The role of
M. bovis in the aetiology of BRD in imported bulls was demonstrated in an observational study involving 264 animals intended for fattening in Italy [
10]. On arrival, almost half of the animals examined showed clinical respiratory symptoms including nasal discharge, and, to a lesser extent, cough and ocular discharge.
M. bovis was detected in almost 80% of 88 pooled nasal swabs tested by RT-PCR and over 95% of 44 pools analysed by culturing, respectively at day 2 and 15 after the arrival of the bulls to the beef fattening unit [
10].
In cases of, among others, untreated chronic pneumonia in feedlot cattle, a significant role of
M. bovis has been demonstrated [
4]. The examined steers were segregated from cattle kept in one Canadian feedlot. In these cases,
M. bovis was the second most frequently detected BRD pathogen after
P. multocida being detected in 48% of the samples tested.
M. haemolytica was also identified, although at a low frequency. This study showed that co-isolation occurred in 40% of the cases studied. Detailed analysis using metagenomic sequencing confirmed the significant role of
M. bovis as one of the most abundant BRD pathogen detected. This method demonstrated the presence of
M. bovis in 52% of the samples tested, and it was more sensitive than culture. However, the analysis of culture and sequencing showed inter-method concordance in only eight cases. In four other cases, the presence of
M. bovis was detected only by culture, while for five other samples the mycoplasma was detected only by metagenomic sequencing. These results highlight the importance of using different methods in parallel, especially for the detection of this mycoplasma. Additionally, sequencing was able to detect other bacteria, some of them previously undetected by culturing in the tested samples, including
M. dispar, other
Mycoplasma spp.,
H. somni, other
Mannheimia spp.,
Moraxella bovis,
Moraxella bovoculi,
Bibersteinia trehalosi and others. In each of the tested samples, the co-occurrence of two or more detected pathogens was shown [
4].
A further study has confirmed the important role of
Mollicutes bacteria, especially
M. bovis, in the aetiology of BRD in feedlot cattle [
7]. The study was conducted on a large group of imported bulls intended for fattening on 13 different Italian farms. In almost 70% of tested nasal samples, microorganisms of the
Mollicutes class were isolated, including
M. bovirhinis,
M. bovis,
M. dispar,
M. arginini,
M. alkalescens,
M. ovipneumoniae,
M. fermentans,
Ureaplasma spp. and
Acholeplasma laidlawii. Most of them were found in mixed cultures. This study showed a generally increasing frequency of
Mollicutes isolation over time, although it varied between the farms sampled. From the pool of all analyzed nasal samples,
M. bovis was the second most frequently detected pathogen of the
Mollicutes class, in over 19% of samples, including almost 7% of pure cultures. This percentage increased to almost 40% after the analysis of the tested samples using the
M. bovis-specific PCR. This study has shown that
M. bovis prevalence in cattle was time-dependent and largely varied between farms regardless of the method used for its detection. A general increase in the percentage in both isolation and PCR-positive frequency was observed at day 15 post arrival of the animals, in contrast to the 60th day of sampling, where this frequency decreased in most cases. It is worth emphasizing, however, that unlike other mycoplasmas such as
M. dispar,
M. bovis prevalence on arrival in the bulls was relatively low in most of the farms sampled. Its increase after two weeks is almost certainly due to the ideal environment provided by the feedlot system enabling the rapid spread of this microorganism between animals in the farm, especially in the first weeks of the fattening period [
7].
Other studies have demonstrated a significant role of
M. bovis in the development of BRD in lactating dairy cows [
15]. This is important because infections with
M. bovis in cows are usually associated with mastitis rather than respiratory disease. In this study, nasal swabs were tested for eight BRD-associated pathogens including:
M. bovis,
H. somni,
P. multocida,
M. haemolytica, BVDV, BRSV, BPIV3, BCoV and bovine alpha herpesvirus 1 (BoAHV-1). Results showed the presence of
M. bovis DNA alone or in co-infection in over 50% of acute respiratory cases in two high-yielding dairy herds (40% in herd 1 and almost 88% in herd 2). Concomitant infections involved only bacterial agents with no viruses detected in the nasal swab samples. This could have been influenced by the vaccination program practiced in both herds including the tested viruses, except BCoV. In herd 1, single infections with
M. bovis or
H. somni as well as dual infections of
M. bovis and
H. somni were observed. In the second herd , one single case of infection with
M. bovis was found, co-infections with two bacteria,
M. bovis and
P. multocida, and, less frequently,
M. bovis and
H. somni. The role of
M. bovis in co-infections in both herds was significant and amounted to 35% and 75% in herds 1 and 2, respectively. Such a clear contribution of
M. bovis to BRD cases indicates the direct role of this pathogen not only in the chronic but also in the acute stages of this disease [
15].
3. Mycoplasma dispar
While
M. dispar was shown to cause a mild pneumonia following experimental infection, it has been difficult to definitively associate it with BRD in the field [
6]. Thirty years ago, ter Laak et al. [
21] provided some supporting evidence when they detected
M. dispar in 92% of pneumonic calf lungs but in only 40% of healthy lungs. More recently, a study conducted on calves with clinical signs of BRD supported its role in the development of this disease [
16]. Samples were tested for the presence of
Mollicutes including selected mycoplasma species such as
M. bovis,
M. dispar and
Mycoplasma mycoides subsp.
mycoides (
Mmm). Mollicute genetic material was detected in the BRD calves at a significantly higher frequency than in healthy animals. Detailed species analysis detected
M. dispar DNA in more than 60% of BRD cases which was significantly higher than in the healthy calves. A significant association between the occurrence of clinical symptoms of BRD and the presence of
M. dispar DNA was found in the case of tachypnea and mixed dyspnea. In comparison,
M. bovis was identified in only one calf that showed clinical signs of BRD, while the presence of
Mmm DNA was not detected in any of the animals tested [
16].
The prevalence of
M. dispar in the tested samples was also demonstrated in the study involving imported bulls where the share of
M. bovis was examined [
7]. In this study,
M. dispar was the third most common mycoplasma species detected, accounting for just over 12% of all analysed nasal swabs. Pure cultures of this bacterium were obtained in over 7%. In contrast to
M. bovis, the
M. dispar frequency was not dependent on time, but it varied similarly between the tested farms, although to a lesser extent [
7].
In a study evaluating the role of BRD pathogens in nonresponsive pneumonia or lameness cases in feedlot cattle the presence of
M. dispar was not demonstrated by culture, probably due to its fastidiousness in culture; but culture-independent techniques like metagenomic sequencing detected this mycoplasma in all samples tested [
4,
6]. It was shown to co-occur with other mycoplasmas or another BRD-associated microorganisms. This study also showed the frequent co-occurrence of
M. dispar, and to a lesser extent with other mycoplasmas, with microorganisms of the
Pasteurellaceae family, especially
P. multocida, which confirms the possible synergistic effect of these BRD associated bacteria [
4].
4. Mycoplasma bovirhinis
Since its first report in 1967,
M. bovirhinis has been detected in the upper and lower respiratory tract of both healthy and diseased cattle throughout the world [
6]. It has never been thought to be a primary pathogen but may exacerbate existing disease conditions caused by other pathogens including
M. bovis and
M. dispar. Lately, one study assessing the role of mycoplasma infections in the aetiology of BRD was conducted in Brazil on 103 suckling calves with clinical symptoms of the disease [
17]. In this study, a similar number of clinically healthy calves were also tested. Nasal swabs collected from all calves were examined for pathogens associated with BRD, such as bacteria of: the
Mollicutes class,
Pasterellaceae family (
P. multocida,
M. haemolytica and
H. somni) and selected viruses: BVDV, BRSV, BPIV3, BoAHV1, BCoV and ovine gammaherpesvirus 2 (OvGHV2). Although
M. bovirhinis was the most frequently detected BRD-associated pathogen among those examined in the clinical cases, its real role in the aetiology of BRD in this study was not proven due to its presence to a comparable percentage in the asymptomatic calves. However,
M. bovirhinis was detected in all examined cattle farms. It is worth emphasizing that most cases of singular infections in the diseased calves were caused by this mycoplasma. However, it was similar to the case of asymptomatic calves in which
M. bovirhinis was detected as a single infectious agent most often, and in total these cases were more numerous. However, the share of dual infections with
M. bovirhinis and OvGHV2 or BCoV was higher in the symptomatic calves compared to asymptomatic ones. It was also similar in the case of quadruple infections due to
M. bovirhinis, OvGHV2, BCoV and
P. multocida. The specific genes of viruses considered to be associated with BRD such as BCoV and OvGHV2 were identified in a high percentage of cases, but at a lower frequency than
M. bovirhinis. However, their percentage share both in the diseased and clinically healthy animals was also similar to those in the case of
M. bovirhinis, especially for BCoV. Unexpectedly, the genetic material of other
Mollicutes, including
M. bovis and bovine viruses such as BVDV, BRSV, BPIV3 and BoAHV1, was not identified in any of the tested samples [
17].
In the study where the prevalence of both
M. bovis and
M. dispar was observed in the cases of BRD in the imported bulls, the presence of
M. bovirhinis was also identified in the tested nasal swabs [
7]. From the pool of all analyzed samples,
M. bovirhinis was the most frequently detected
Mollicutes bacteria (almost 40% of samples), including over 18% of pure cultures. Similarly to
M. bovis, the frequency of
M. bovirhinis was characterized by high variability within the studied farms. In contrast to
M. bovis, a general increase in the percentage of
M. bovirhinis frequency was observed at day 60 post-arrival. Additional analysis showed that the
M. bovirhinis prevalence was season-dependent with a higher frequency of this mycoplasma in the warm season [
7].