Structural Catalytic Core in Subtilisin-Like Proteins and its Comparison to Trypsin-Like Serine Proteases and Alpha/Beta-Hydrolases

Alexander I. Denesyuk; Konstantin Denessiouk; Mark S. Johnson; Vladimir N. Uversky

doi:10.20944/preprints202410.0597.v1

Preprint Article Version 1 This version is not peer-reviewed

Version 1 : Received: 7 October 2024 / Approved: 8 October 2024 / Online: 8 October 2024 (13:40:34 CEST)

Subtilisin-like proteins are serine proteases that use two types of catalytic triads: Ser-His-Asp and Ser-Glu-Asp. Here, we investigate the two known families of subtilisin-like proteins, the subtilases (Ser-His-Asp triad) and the serine-carboxyl proteinases (Ser-Glu-Asp triad), and describe local structural arrangements (cores) that govern the catalytic residues in these proteins. We show separation of the cores into conserved structural zones, which can be repeatedly found in different structures, and compare the structural cores in subtilisin-like proteins with those in trypsin-like serine proteases and alpha/beta-hydrolases.

subtilisin-like; alpha/beta-hydrolases; serine proteases; 3D structure; structural catalytic core; catalytic pentad

Biology and Life Sciences, Biochemistry and Molecular Biology

Not displayed online.

Please leave your comment to this article below.

Mathematical equations can be typed in either LaTeX formats \\[ ... \\] or $$ ... $$, or MathML format <math> ... </math>. Try the LaTeX or MathML example.

Type equation:

Preview:

Copy equation into message below

Close menu

Please click a symbol to insert it into the message box below:

Please enter the link here:

Optionally, you can enter text that should appear as linked text:

Copy link into message below

Close menu

Please enter or paste the URL to the image here (please only use links to jpg/jpeg, png and gif images):

Copy image into message below

Close menu

Type author name or keywords to filter the list of references in this group (you can add a new citation under Bibliography):

No existing citations in Discussion Group

Wikify editor is a simple editor for wiki-style mark-up. It was written by MDPI for Sciforum in 2014. The rendering of the mark-up is based on Wiky.php with some tweaks. Rendering of mathematical equations is done with MathJax. Please send us a message for support or for reporting bugs.

Close menu

Please declare any conflicts of interest you may have with this paper, financial or otherwise.

I do not have a conflict of interest

I would like to declare a conflict of interest

Display my name on the website

Captcha

Renew

I accept the following conditions:

Comments must follow the standards of professional discourse and should focus on the scientific content of the article. Insulting or offensive language, personal attacks and off-topic remarks will not be permitted. Comments must be written in English. Preprints reserves the right to remove comments without notice. Readers who post comments are obliged to declare any competing interests, financial or otherwise.

* All users must log in before leaving a comment

Notify me about updates to this article or when a peer-reviewed version is published.

Structural Catalytic Core in Subtilisin-Like Proteins and its Comparison to Trypsin-Like Serine Proteases and Alpha/Beta-Hydrolases

Abstract

Keywords

Subject

Comments (0)