3.1. SESN3 Is Newly Identified Target of miR-25 as a ROS Scavenger
IRI induces severe oxidative stress in the heart, subsequently leading to myocardial cell damage and cardiac dysfunction. Recently, we observed a significant increase in the expression of miR-25 under hypoxia/reoxygenation (H/R) conditions, and pretreatment with miR-25 Tough Decoy (TuD) substantially reduced ROS generation. Therefore, we hypothesized that miR-25 may regulate potential antioxidant molecules. To identify novel targets of miR-25 involved in the regulation of oxidative damage, we conducted in silico analyses utilizing three databases: Target Miner (May 2012 version), TargetScan7 (TargetScanHuman 7.0), and miRDB (accessed on May 18, 2022). From a total of 148 candidate genes identified through these databases, we selected SESN3 for further investigation (
Figure 1A) due to its antioxidant properties. Notably, the 3'-UTR of SESN3 mRNA exhibited high conservation across species.
To verify the direct interaction between miR-25 and SESN3, we performed a luciferase reporter assay using a construct containing the SESN3 3'-UTR sequence. The results demonstrated a dose-dependent decrease in luciferase activity with increasing concentrations of pre-miR-25, suggesting that miR-25 directly targets the 3'-UTR region of SESN3 (
Figure 1B). To validate these findings, we employed an
in vitro hypoxia/reoxygenation (H/R) system using H9c2 myoblasts and evaluated the effect of inhibiting miR-25 on SESN3 expression and ROS generation. Under H/R conditions, we first confirmed that miR-25 was indeed highly expressed (
Figure 1C). Subsequently, we observed decreased SESN3 expression concomitant with increased ROS production. Additionally, the pretreatment with the miR-25 TuD inhibitor under H/R conditions not only normalized SESN3 expression but also reduced ROS generation (
Figures 1C, 1D). Collectively, these results provide compelling evidence that H/R-induced ROS generation is significantly reduced by the restoration of SESN3 expression through miR-25 inhibition.
3.2. SESN3 Overexpression Ameliorates ROS-Induced Apoptosis In Vitro
The SESN family consists of three isoforms: SESN1, SESN2, and SESN3. Most of the literature has focused on SESN1 and SESN2, likely due to their relatively higher expression levels [
43,
44,
45,
46]. In contrast, the antioxidant effects of SESN3, particularly in the heart, have not been fully elucidated. Therefore, we first characterized SESN3 activity to determine whether it can also scavenge ROS under hypoxia/reoxygenation (H/R) conditions. To this end, we evaluated the effect of SESN3 overexpression by measuring immunofluorescence against ROS and cell death under H/R condition.
First, we observed that the apoptotic markers, cleaved PARP and cleaved caspase-9, significantly increased in the H/R group; however, these markers were substantially reduced with SESN3 overexpression. These findings suggest that SESN3 effectively mitigates ROS-induced cell death (
Figure 2B,C).
Based on these results, we further investigated the impact of miR-25 on SESN3 expression by treating cells with pre-miR-25 and performing immunofluorescence staining for SESN3. As shown in Supplementary
Figure 1, SESN3 expression was dramatically decreased in the pre-miR-25 transfected group. In summary, we confirmed that SESN3 alone fully mitigates ROS-induced apoptosis, and its expression can be negatively regulated by miR-25.
3.3. miR-25 TuD Delivery Attenuates Hypoxia/Reoxygenation-Induced Damage in H9c2 Cardiomyoblasts
Based on previous results, we next measured the expression of three forms of miR-25 (pri-, pre-, and mature forms) and three SESN isoforms following miR-25 TuD delivery to assess its specificity for SESN3. First, all three forms of miR-25 were substantially increased under H/R conditions, but miR-25 TuD delivery dramatically normalized their expression (
Figure 3B). Under the same conditions, we examined the expression of all three SESN isoforms: SESN1, SESN2, and SESN3. SESN1 and SESN2 were significantly upregulated under H/R conditions, consistent with the previous reports [
46]. In contrast, SESN3 expression was significantly decreased. To our surprise, miR-25 TuD delivery significantly increased SESN3 expression while both SESN1 and SESN2 were downregulated (
Figure 3C). These results suggest that normalizing SESN3 expression is sufficient to reduce ROS-induced damage, indicating that SESN1 and SESN2 levels could also normalize as a consequence.
Oxidative stress generally induces cell apoptosis, which, in many cases, exacerbates cardiac fibrosis [
47]. Therefore, we further investigated the effect of miR-25 inhibition in both apoptosis and fibrosis. As shown in
Figure 4D, restoration of SESN3 expression through miR-25 TuD delivery remarkably decreased the levels of apoptotic markers, including cleaved PARP and cleaved caspase-9, while increasing the expression of the anti-apoptotic marker Bcl-XL. Furthermore, we observed a reduction in the expression of fibrosis markers, such as TGF-β and fibronectin. Taken together, these results suggest that miR-25 inhibition via TuD delivery not only modulates the expression of SESN family but also attenuates apoptosis and fibrosis through the regulation of oxidative stress.
3.4. miR-25 TuD Delivery Reduces ROS-Mediated Damages in a Cardiac IRI Model
Our results suggest that miR-25 inhibition successfully reduced ROS generation, apoptosis, and fibrosis through the restoration of SESN3 expression in vitro. To validate these findings and explore their clinical relevance, we extended our investigation to an in vivo mouse model of cardiac IRI, with or without miR-25 TuD delivery.
For this purpose, we utilized AAV9-EGFP (control) and AAV9-miR-25 TuD, administered via tail vein injection to 8-week-old mice, according to the experimental scheme (
Figure 4A). Initially, we confirmed that AAV9-miR-25 TuD delivery effectively reduced the levels of primary miR-25, precursor miR-25, and mature miR-25-3p in the mouse heart (
Figure 4B). This reduction in miR-25 expression is critical for the success of our subsequent experiments.
We then examined the expression of the SESN isoforms, focusing particularly on SESN3, a novel target of miR-25. As shown in
Figure 4C, SESN3 mRNA expression was restored following AAV9-miR-25 TuD delivery, while SESN1 and SESN2 were substantially reduced, consistent with our
in vitro data. Next, we investigated the expression of key proteins related to apoptosis and fibrosis in the cardiac samples from these mice. As
in vitro, SESN3 expression was significantly increased. Additionally, cleaved caspase-9, a key mediator of apoptosis, was highly elevated but effectively mitigated by miR-25 TuD delivery. In contrast, the anti-apoptotic marker Bcl-XL was substantially upregulated, indicating a shift towards cell survival and away from apoptotic pathways.
Furthermore, we observed a reduction in TGF-β and fibronectin levels, both of which are associated with fibrotic processes. Thus, miR-25 inhibition not only prevents cell apoptosis but also attenuates fibrotic remodeling in the injured myocardium.
In summary, our data demonstrate that miR-25 inhibition using miR-25 TuD is sufficient to alleviate oxidative stress in cardiac IRI. Restoration of SESN3 expression, along with the modulation of apoptotic and fibrotic markers, appears to be a key mechanism in preventing cell death and pathological remodeling.
3.5. miR-25 TuD Delivery Mitigates IRI-Induced Cardiac Dysfunction
To assess the impact of miR-25 TuD delivery on cardiac function, we performed weekly echocardiographic evaluations (
Figure 5A). In the IRI model, the heart weight-to-body weight ratio was increased compared to sham-operated mice, while mice treated with AAV9 miR-25 TuD exhibited a ratio similar to that of the sham group (
Figure 5B). Ventricular ejection fraction (EF) and fractional shortening (FS) were significantly higher in the AAV9 miR-25 TuD-treated group than in the IRI group (
Figure 5C). The decreased IVSd and IVSs values observed in the IRI model suggest a loss of contractility due to ischemic injury. Notably, both values were preserved in mice treated with AAV9 miR-25 TuD (
Figure 5C).
Taken together, these results suggest that miR-25 inhibition using miR-25 TuD can effectively prevent ROS-induced cardiac dysfunction in vivo.