The effects of organic metabolites produced by a sulfate-reducing prokaryote (SRP) in seawater on the anode corrosion process of magnesium alloy were analyzed by open circuit potential, electrochemical impedance spectroscopy, polarization curve, and other electrochemical methods, combined with scanning electron microscopy and X-ray diffraction. It was found that the product film produced by magnesium alloy anode corrosion was not dense, and the surface of the magnesium anode substrate was exposed during the corrosion process. The corrosion of magnesium anode matrix was accelerated by the simulation of different organic metabolites including mannose, glucuronic acid, and glucose. Thus, the synergistic effect of various metabolites produced by SRP in the corrosion process of magnesium alloy may be considered in future studies.