Water deficit (drought) is still one of the most important stress factors affecting not only yields, but also production quality. Breeders are focusing on breeding cultivars and crop lines that are more resistant to water shortages. In addition to breeding, for example, for the size of the roots and changes in the color of the leaves, focus on changing the morphotype i.e. long chaff, multirowed ear. It is predicted that wheat genotypes with a morphotype change should be more drought tolerant. Therefore, our research focused on the study of changes in the physiological parameters of wheat (cv. ´Bohemia´) with a changed morphotype (genotypes ´284-17´ [long chaff] and genotype ´29-17´ [multirowed ear]) in relation to exposure to drought. Pigment content, photosynthesis and transpiration rate, water potential were measured in plants irrigated and affected by water deficit. Water deficit was shown to have a statistically significant effect on transpiration rate, photosynthetic rate, water potential and total chlorophyll content. Furthermore, the influence of the genotype on the observed parameters and on the effect of water deficit was demonstrated. Due to the fact that cv. ´Bohemia´, increases during such periods of transpiration, so for this reason it is not suitable for dry areas. Genotype ́29-17 ́ appears promising with respect to drought resistance.