This study examined the spatial-temporal distribution of sulfur and iron compounds (dissolved sulfide, iron sulfide, and ionized iron) in sediments from April 2015 to March 2016 at four stations in Mikawa Bay, Japan. Seasonal changes were observed in dissolved sulfide, iron sulfide, and ionized iron in the upper part of the sediment (0–4 cm depth) at all stations. The maximum concentration in the upper part of the central bay was 2.8 mmol L-1. The maximum values of dissolved sulfide (ranging from 1.4 to 8.1 mmol L-1) at stations located in a water way varied among stations. The iron sulfide concentration in the upper part of the sediment at a station where dissolved sulfide concentration in the waterway was relatively low exceeded that at other stations in the waterway during spring to summer. Ionized iron concentration was highest at the station where the dissolved sulfide concentration was low. The study results suggest that iron plays an important role in determining the magnitude of dissolved sulfide accumulation in sediments by binding with dissolved sulfide. The results imply the possibility of mitigating the accumulation of free sulfides, which causes extreme hypoxia, by artificially adding sufficient iron to the seabed.