Accurate and robust methods are needed to monitor crop growth and predict grain yield and quality in breeding programs under variable agrometeorological conditions. Field experiments were conducted during two successive cropping seasons (2021, 2022) at four trial locations (Estonia, Latvia, Lithuania, Norway). The focus was on assessment of grain yield (GY), grain protein content (GPC), and UAV-derived NDVI measured at different plant growth stages. Performance and stability of 16 selected spring wheat genotypes were assessed under two N application rates (75, 150 kg N ha−1) and over contrasted agrometeorological conditions were assessed, and the quantitative relationships between agronomic traits and UAV-derived variables were figured out. None of the traits were subject to a significant (p<0.05) genotype by nitrogen interaction. High-yielding and high-protein genotypes were detected with high WAASB stability, specifically under high and low N rates. This study highlights the significant effect of NDVI analysis on growth stages GS55 and GS75 as key linear predictors, especially in the context of spring wheat GY. However, the effect of these indices depends on the specific growing conditions in the respective locations, thus limiting their universal utility.