The nucleon-pair shell model (NPSM) with broken symmetry basis is studied. The results demonstrate the validity of NPSM with symmetry broken basis, which leads to a significant reduction in the dimensionality of the multi-pair configuration space. We have observed that the axial-deformed basis provides a satisfactory description of the low-lying spectrum, even without the need for the projection procedure. In the case of the triaxial-deformed basis, we have investigated the variation after angular momentum projection, indicating the potential for NPSM to find exact solutions in the half-closed system.