Preprint Article Version 1 Preserved in Portico This version is not peer-reviewed

The Genome Assembly and Annotation of the White‐ Lipped Tree Pit Viper Trimeresurus albolabris

Version 1 : Received: 22 January 2024 / Approved: 23 January 2024 / Online: 23 January 2024 (18:54:43 CET)

A peer-reviewed article of this Preprint also exists.

Niu, X.; Lv, Y.; Chen, J.; Feng, Y.; Cui, Y.; Lu, H.; Liu, H. The Genome Assembly and Annotation of the White-Lipped Tree Pit Viper Trimeresurus Albolabris. Gigabyte 2024, 2024, 1–11, doi:10.46471/gigabyte.106. Niu, X.; Lv, Y.; Chen, J.; Feng, Y.; Cui, Y.; Lu, H.; Liu, H. The Genome Assembly and Annotation of the White-Lipped Tree Pit Viper Trimeresurus Albolabris. Gigabyte 2024, 2024, 1–11, doi:10.46471/gigabyte.106.

Abstract

Trimeresurus albolabris, also known as the white-lipped pit viper or white-lipped tree viper, is a highly venomous snake distributed across Southeast Asia and the cause of many snakebite cases. In this study, we report the first whole genome assembly of T. albolabris obtained with next-generation sequencing from a specimen collected in Mengzi, Yunnan, China. After genome sequencing and assembly, the genome of this male T. albolabris individual was 1.51 Gb in length and included 38.42% repeat-element content. Using this genome, 21,695 genes were identified, and 99.17% of genes could be annotated using gene functional databases. Our genome assembly and annotation process was validated using a phylogenetic tree, which included six species and focused on single-copy genes of nuclear genomes. This research will contribute to future studies on Trimeresurus biology and the genetic basis of snake venom.

Keywords

genetics and genomics; evolutionary biology; zoology

Subject

Biology and Life Sciences, Animal Science, Veterinary Science and Zoology

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